Clone Sequence Records
BO04728.3prime Sequence
914 bp (748 high quality bases) assembled on 2005-12-01
> BO04728.3prime
ATGGTCTAGAAAGCTTGCATGGCGCATCTGCCGCTGTGCCTCCTTCTCCA
CCTCATACTCGTACTCCAGCTGCAGTTTGGGCTTCGAGCGGCTGCGTCGA
CTGTTGCCCGCCGGCGATTTCTTGTCCTTCTTCGCTTTGCTGGCGGTTTT
CTTGGCTGGCACTTTGGTCTCCTCAATATCATCTGCATCCGCATCGTCAT
CCTCGTCGGACTCCTCGAAATCGCTGCCCACCTCGACCTCTTCCCGCTTG
CCGGAATCGCTGTCGTAGTCGTCCTCGTCATCATCATCATCATCATCATC
ATCCTCCTCCTCATCGTCCGTATCTGCCTCGACGAACTCCTCGTCGAGCA
GGGATCTCTGTACTTCCTCAGCTTCGCGTGAATCGTCGCCGTCCACCTCC
ATTTCGCGCTCCAGCTGCTCCTCATTCTCGTCTTCGTCGTCTAGCTCCTC
CTCATCATCCTCGTCCACGCGTTCCGCCTCCAGAGCCTTGTTGAAAGCGG
TCTGCGAAAAGTTGTAGATGTCGCGATAGGTGCCATTCTTCAGACGATCC
ATCAGCGCCTTCTCGATGTGATTGTCGATCTTGGCGGCCACCAAGGCCTT
CTCCTCGCGCCGCGCCTCCCGCCGTTCGATCTTCGTCGATAGCGGCACAA
TGAGCTTCTGGCGGCGCAACTTCAGACGACGCATTCGTATCAGATATTGG
GTGATCTTGAGGAAACGCTGCTTATTCTTGGCGATCATGTATTTGGGCCA
GAAAACCAAATTCTCGTTGATCTGTTCGATGGCCTTCTCGAAGTTTCTGG
ACAACTTGATCCTCTCCCACAATTTGCTCGGCATATGCGCTCTCTCCGCC
GTCTTGATGAACAAATAGATGATGCCCTTCTCCTCGCGAACGGTGGCATA
TTGTGAATTGGGCA
BO04728.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10648-PA | 1032 | CG10648-RA | 137..1029 | 911..19 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbm13-RB | 1535 | CG10648-RB | 236..1128 | 911..19 | 4465 | 100 | Minus |
Rbm13-RA | 1238 | CG10648-RA | 236..1128 | 911..19 | 4465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8902072..8902812 | 911..171 | 3705 | 100 | Minus |
X | 23542271 | X | 8903200..8903354 | 173..19 | 775 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 15:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frogger | 2483 | frogger FROGGER 2483bp | 1932..1971 | 247..286 | 110 | 75 | Plus |
BO04728.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:01 Download gff for
BO04728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10648-PA | 135..1032 | 18..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:52 Download gff for
BO04728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10648-PA | 135..1032 | 18..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:12 Download gff for
BO04728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 242..1140 | 13..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:34 Download gff for
BO04728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 234..1132 | 13..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:34 Download gff for
BO04728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8902070..8902811 | 172..913 | 99 | -> | Minus |
X | 8903202..8903358 | 13..171 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:12 Download gff for
BO04728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8797235..8797391 | 13..171 | 98 | | Minus |
arm_X | 8796103..8796844 | 172..913 | 99 | -> | Minus |
BO04728.5prime Sequence
765 bp (757 high quality bases) assembled on 2005-11-29
> BO04728.5prime
GAAGTTATCAGTCGACATGCAGCACGACGATGTGGTCTGGAGCATCATCA
ACAAGTCCTTCTGTTCGCACAAAGTGAAAACCGACACACGCACCTTCTGC
CGCCATGAGTACAATCTCACGGGTCTGTGCACACGCAGAACGTGTCCGCT
GGCCAATTCACAATATGCCACCGTTCGCGAGGAGAAGGGCATCATCTATT
TGTTCATCAAGACGGCGGAGAGAGCGCATATGCCGAGCAAATTGTGGGAG
AGGATCAAGTTGTCCAGAAACTTCGAGAAGGCCATCGAACAGATCAACGA
GAATTTGGTTTTCTGGCCCAAATACATGATCGCCAAGAATAAGCAGCGTT
TCCTCAAGATCACCCAATATCTGATACGAATGCGTCGTCTGAAGTTGCGC
CGCCAGAAGCTCATTGTGCCGCTATCGACGAAGATCGAACGGCGGGAGGC
GCGGCGCGAGGAGAAGGCCTTGGTGGCCGCCAAGATCGACAATCACATCG
AGAAGGCGCTGATGGATCGTCTGAAGAATGGCACCTATCGCGACATCTAC
AACTTTTCGCAGACCGCTTTCAACAAGGCTCTGGAGGCGGAACGCGTGGA
CGAGGATGATGAGGAGGAGCTAGACGACGAAGACGAGAATGAGGAGCAGC
TGGAGCGCGAAATGGAGGTGGACGGCGACGATTCACGCGAAGCTGAGGAA
GTACAGAGATCCCTGCTCGACGAGGAGTTCGTCGAGGCAGATACGGACGA
TGAGGAGGAGGATGA
BO04728.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10648-PA | 1032 | CG10648-RA | 1..749 | 17..765 | 3745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbm13-RB | 1535 | CG10648-RB | 99..848 | 16..765 | 3750 | 100 | Plus |
Rbm13-RA | 1238 | CG10648-RA | 99..848 | 16..765 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:31:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8901998..8902684 | 79..765 | 3435 | 100 | Plus |
X | 23542271 | X | 8901880..8901926 | 32..78 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:31:36 has no hits.
BO04728.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:02 Download gff for
BO04728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10648-PA | 1..748 | 17..764 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:53 Download gff for
BO04728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10648-PA | 1..748 | 17..764 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:26 Download gff for
BO04728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 104..855 | 13..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:16:24 Download gff for
BO04728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 96..847 | 13..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:16:24 Download gff for
BO04728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8901794..8901812 | 13..31 | 94 | -> | Plus |
X | 8901880..8901926 | 32..78 | 100 | -> | Plus |
X | 8901998..8902683 | 79..764 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:26 Download gff for
BO04728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8795827..8795845 | 13..31 | 94 | -> | Plus |
arm_X | 8795913..8795959 | 32..78 | 100 | -> | Plus |
arm_X | 8796031..8796716 | 79..764 | 100 | | Plus |
BO04728.complete Sequence
1063 bp (1063 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629853
> BO04728.complete
GAAGTTATCAGTCGACATGCAGCACGACGATGTGGTCTGGAGCATCATCA
ACAAGTCCTTCTGTTCGCACAAAGTGAAAACCGACACACGCACCTTCTGC
CGCCATGAGTACAATCTCACGGGTCTGTGCACACGCAGAACGTGTCCGCT
GGCCAATTCACAATATGCCACCGTTCGCGAGGAGAAGGGCATCATCTATT
TGTTCATCAAGACGGCGGAGAGAGCGCATATGCCGAGCAAATTGTGGGAG
AGGATCAAGTTGTCCAGAAACTTCGAGAAGGCCATCGAACAGATCAACGA
GAATTTGGTTTTCTGGCCCAAATACATGATCGCCAAGAATAAGCAGCGTT
TCCTCAAGATCACCCAATATCTGATACGAATGCGTCGTCTGAAGTTGCGC
CGCCAGAAGCTCATTGTGCCGCTATCGACGAAGATCGAACGGCGGGAGGC
GCGGCGCGAGGAGAAGGCCTTGGTGGCCGCCAAGATCGACAATCACATCG
AGAAGGCGCTGATGGATCGTCTGAAGAATGGCACCTATCGCGACATCTAC
AACTTTTCGCAGACCGCTTTCAACAAGGCTCTGGAGGCGGAACGCGTGGA
CGAGGATGATGAGGAGGAGCTAGACGACGAAGACGAGAATGAGGAGCAGC
TGGAGCGCGAAATGGAGGTGGACGGCGACGATTCACGCGAAGCTGAGGAA
GTACAGAGATCCCTGCTCGACGAGGAGTTCGTCGAGGCAGATACGGACGA
TGAGGAGGAGGATGATGATGATGATGATGATGATGACGAGGACGACTACG
ACAGCGATTCCGGCAAGCGGGAAGAGGTCGAGGTGGGCAGCGATTTCGAG
GAGTCCGACGAGGATGACGATGCGGATGCAGATGATATTGAGGAGACCAA
AGTGCCAGCCAAGAAAACCGCCAGCAAAGCGAAGAAGGACAAGAAATCGC
CGGCGGGCAACAGTCGACGCAGCCGCTCGAAGCCCAAACTGCAGCTGGAG
TACGAGTATGAGGTGGAGAAGGAGGCACAGCGGCAGATGCGCCATGCAAG
CTTTCTAGACCAT
BO04728.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbm13-RB | 1032 | CG10648-PB | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Rbm13-RA | 1032 | CG10648-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbm13-RB | 1535 | CG10648-RB | 99..1128 | 16..1045 | 5150 | 100 | Plus |
Rbm13-RA | 1238 | CG10648-RA | 99..1128 | 16..1045 | 5150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8901998..8902812 | 79..893 | 4075 | 100 | Plus |
X | 23542271 | X | 8903200..8903354 | 891..1045 | 775 | 100 | Plus |
X | 23542271 | X | 8901880..8901926 | 32..78 | 235 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frogger | 2483 | frogger FROGGER 2483bp | 1932..1971 | 817..778 | 110 | 75 | Minus |
BO04728.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:42 Download gff for
BO04728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 1..1032 | 17..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:36 Download gff for
BO04728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 106..1142 | 13..1051 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:11 Download gff for
BO04728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 108..1136 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:42 Download gff for
BO04728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 106..1142 | 13..1051 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:49 Download gff for
BO04728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbm13-RA | 100..1128 | 17..1047 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:49 Download gff for
BO04728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8901880..8901926 | 32..78 | 100 | -> | Plus |
X | 8901998..8902811 | 79..892 | 100 | -> | Plus |
X | 8903202..8903354 | 893..1047 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:11 Download gff for
BO04728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8795913..8795959 | 32..78 | 100 | -> | Plus |
arm_X | 8796031..8796844 | 79..892 | 100 | -> | Plus |
arm_X | 8797235..8797387 | 893..1047 | 98 | | Plus |
BO04728.pep Sequence
Translation from 16 to 1063
> BO04728.pep
MQHDDVVWSIINKSFCSHKVKTDTRTFCRHEYNLTGLCTRRTCPLANSQY
ATVREEKGIIYLFIKTAERAHMPSKLWERIKLSRNFEKAIEQINENLVFW
PKYMIAKNKQRFLKITQYLIRMRRLKLRRQKLIVPLSTKIERREARREEK
ALVAAKIDNHIEKALMDRLKNGTYRDIYNFSQTAFNKALEAERVDEDDEE
ELDDEDENEEQLEREMEVDGDDSREAEEVQRSLLDEEFVEADTDDEEEDD
DDDDDDDEDDYDSDSGKREEVEVGSDFEESDEDDDADADDIEETKVPAKK
TASKAKKDKKSPAGNSRRSRSKPKLQLEYEYEVEKEAQRQMRHASFLDH
BO04728.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbm13-PB | 343 | CG10648-PB | 1..343 | 1..343 | 1775 | 100 | Plus |
Rbm13-PA | 343 | CG10648-PA | 1..343 | 1..343 | 1775 | 100 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 861..978 | 195..311 | 188 | 33.9 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 861..978 | 195..311 | 188 | 33.9 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 695..887 | 133..310 | 187 | 29.5 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 695..887 | 133..310 | 187 | 29.5 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 843..937 | 195..290 | 177 | 36.1 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 843..937 | 195..290 | 177 | 36.1 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 802..914 | 195..295 | 171 | 37.2 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 802..914 | 195..295 | 171 | 37.2 | Plus |
Asph-PB | 382 | CG8421-PB | 181..372 | 158..345 | 164 | 27 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 822..977 | 192..342 | 159 | 23.7 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 822..977 | 192..342 | 159 | 23.7 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 791..899 | 190..293 | 158 | 31.2 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 791..899 | 190..293 | 158 | 31.2 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 879..975 | 186..287 | 154 | 34.3 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 879..975 | 186..287 | 154 | 34.3 | Plus |