Clone BO04728 Report

Search the DGRC for BO04728

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:47
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptRbm13-RA
Protein status:BO04728.pep: validated full length
Sequenced Size:1063

Clone Sequence Records

BO04728.3prime Sequence

914 bp (748 high quality bases) assembled on 2005-12-01

> BO04728.3prime
ATGGTCTAGAAAGCTTGCATGGCGCATCTGCCGCTGTGCCTCCTTCTCCA
CCTCATACTCGTACTCCAGCTGCAGTTTGGGCTTCGAGCGGCTGCGTCGA
CTGTTGCCCGCCGGCGATTTCTTGTCCTTCTTCGCTTTGCTGGCGGTTTT
CTTGGCTGGCACTTTGGTCTCCTCAATATCATCTGCATCCGCATCGTCAT
CCTCGTCGGACTCCTCGAAATCGCTGCCCACCTCGACCTCTTCCCGCTTG
CCGGAATCGCTGTCGTAGTCGTCCTCGTCATCATCATCATCATCATCATC
ATCCTCCTCCTCATCGTCCGTATCTGCCTCGACGAACTCCTCGTCGAGCA
GGGATCTCTGTACTTCCTCAGCTTCGCGTGAATCGTCGCCGTCCACCTCC
ATTTCGCGCTCCAGCTGCTCCTCATTCTCGTCTTCGTCGTCTAGCTCCTC
CTCATCATCCTCGTCCACGCGTTCCGCCTCCAGAGCCTTGTTGAAAGCGG
TCTGCGAAAAGTTGTAGATGTCGCGATAGGTGCCATTCTTCAGACGATCC
ATCAGCGCCTTCTCGATGTGATTGTCGATCTTGGCGGCCACCAAGGCCTT
CTCCTCGCGCCGCGCCTCCCGCCGTTCGATCTTCGTCGATAGCGGCACAA
TGAGCTTCTGGCGGCGCAACTTCAGACGACGCATTCGTATCAGATATTGG
GTGATCTTGAGGAAACGCTGCTTATTCTTGGCGATCATGTATTTGGGCCA
GAAAACCAAATTCTCGTTGATCTGTTCGATGGCCTTCTCGAAGTTTCTGG
ACAACTTGATCCTCTCCCACAATTTGCTCGGCATATGCGCTCTCTCCGCC
GTCTTGATGAACAAATAGATGATGCCCTTCTCCTCGCGAACGGTGGCATA
TTGTGAATTGGGCA

BO04728.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10648-PA 1032 CG10648-RA 137..1029 911..19 4465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
Rbm13-RB 1535 CG10648-RB 236..1128 911..19 4465 100 Minus
Rbm13-RA 1238 CG10648-RA 236..1128 911..19 4465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8902072..8902812 911..171 3705 100 Minus
X 23542271 X 8903200..8903354 173..19 775 100 Minus
Blast to na_te.dros performed 2015-02-11 15:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
frogger 2483 frogger FROGGER 2483bp 1932..1971 247..286 110 75 Plus

BO04728.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:01 Download gff for BO04728.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10648-PA 135..1032 18..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:52 Download gff for BO04728.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10648-PA 135..1032 18..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:12 Download gff for BO04728.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 242..1140 13..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:34 Download gff for BO04728.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 234..1132 13..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:34 Download gff for BO04728.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8902070..8902811 172..913 99 -> Minus
X 8903202..8903358 13..171 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:12 Download gff for BO04728.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8797235..8797391 13..171 98   Minus
arm_X 8796103..8796844 172..913 99 -> Minus

BO04728.5prime Sequence

765 bp (757 high quality bases) assembled on 2005-11-29

> BO04728.5prime
GAAGTTATCAGTCGACATGCAGCACGACGATGTGGTCTGGAGCATCATCA
ACAAGTCCTTCTGTTCGCACAAAGTGAAAACCGACACACGCACCTTCTGC
CGCCATGAGTACAATCTCACGGGTCTGTGCACACGCAGAACGTGTCCGCT
GGCCAATTCACAATATGCCACCGTTCGCGAGGAGAAGGGCATCATCTATT
TGTTCATCAAGACGGCGGAGAGAGCGCATATGCCGAGCAAATTGTGGGAG
AGGATCAAGTTGTCCAGAAACTTCGAGAAGGCCATCGAACAGATCAACGA
GAATTTGGTTTTCTGGCCCAAATACATGATCGCCAAGAATAAGCAGCGTT
TCCTCAAGATCACCCAATATCTGATACGAATGCGTCGTCTGAAGTTGCGC
CGCCAGAAGCTCATTGTGCCGCTATCGACGAAGATCGAACGGCGGGAGGC
GCGGCGCGAGGAGAAGGCCTTGGTGGCCGCCAAGATCGACAATCACATCG
AGAAGGCGCTGATGGATCGTCTGAAGAATGGCACCTATCGCGACATCTAC
AACTTTTCGCAGACCGCTTTCAACAAGGCTCTGGAGGCGGAACGCGTGGA
CGAGGATGATGAGGAGGAGCTAGACGACGAAGACGAGAATGAGGAGCAGC
TGGAGCGCGAAATGGAGGTGGACGGCGACGATTCACGCGAAGCTGAGGAA
GTACAGAGATCCCTGCTCGACGAGGAGTTCGTCGAGGCAGATACGGACGA
TGAGGAGGAGGATGA

BO04728.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10648-PA 1032 CG10648-RA 1..749 17..765 3745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rbm13-RB 1535 CG10648-RB 99..848 16..765 3750 100 Plus
Rbm13-RA 1238 CG10648-RA 99..848 16..765 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8901998..8902684 79..765 3435 100 Plus
X 23542271 X 8901880..8901926 32..78 235 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:31:36 has no hits.

BO04728.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:02 Download gff for BO04728.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10648-PA 1..748 17..764 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:53 Download gff for BO04728.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10648-PA 1..748 17..764 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:26 Download gff for BO04728.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 104..855 13..764 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:16:24 Download gff for BO04728.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 96..847 13..764 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:16:24 Download gff for BO04728.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8901794..8901812 13..31 94 -> Plus
X 8901880..8901926 32..78 100 -> Plus
X 8901998..8902683 79..764 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:26 Download gff for BO04728.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8795827..8795845 13..31 94 -> Plus
arm_X 8795913..8795959 32..78 100 -> Plus
arm_X 8796031..8796716 79..764 100   Plus

BO04728.complete Sequence

1063 bp (1063 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629853

> BO04728.complete
GAAGTTATCAGTCGACATGCAGCACGACGATGTGGTCTGGAGCATCATCA
ACAAGTCCTTCTGTTCGCACAAAGTGAAAACCGACACACGCACCTTCTGC
CGCCATGAGTACAATCTCACGGGTCTGTGCACACGCAGAACGTGTCCGCT
GGCCAATTCACAATATGCCACCGTTCGCGAGGAGAAGGGCATCATCTATT
TGTTCATCAAGACGGCGGAGAGAGCGCATATGCCGAGCAAATTGTGGGAG
AGGATCAAGTTGTCCAGAAACTTCGAGAAGGCCATCGAACAGATCAACGA
GAATTTGGTTTTCTGGCCCAAATACATGATCGCCAAGAATAAGCAGCGTT
TCCTCAAGATCACCCAATATCTGATACGAATGCGTCGTCTGAAGTTGCGC
CGCCAGAAGCTCATTGTGCCGCTATCGACGAAGATCGAACGGCGGGAGGC
GCGGCGCGAGGAGAAGGCCTTGGTGGCCGCCAAGATCGACAATCACATCG
AGAAGGCGCTGATGGATCGTCTGAAGAATGGCACCTATCGCGACATCTAC
AACTTTTCGCAGACCGCTTTCAACAAGGCTCTGGAGGCGGAACGCGTGGA
CGAGGATGATGAGGAGGAGCTAGACGACGAAGACGAGAATGAGGAGCAGC
TGGAGCGCGAAATGGAGGTGGACGGCGACGATTCACGCGAAGCTGAGGAA
GTACAGAGATCCCTGCTCGACGAGGAGTTCGTCGAGGCAGATACGGACGA
TGAGGAGGAGGATGATGATGATGATGATGATGATGACGAGGACGACTACG
ACAGCGATTCCGGCAAGCGGGAAGAGGTCGAGGTGGGCAGCGATTTCGAG
GAGTCCGACGAGGATGACGATGCGGATGCAGATGATATTGAGGAGACCAA
AGTGCCAGCCAAGAAAACCGCCAGCAAAGCGAAGAAGGACAAGAAATCGC
CGGCGGGCAACAGTCGACGCAGCCGCTCGAAGCCCAAACTGCAGCTGGAG
TACGAGTATGAGGTGGAGAAGGAGGCACAGCGGCAGATGCGCCATGCAAG
CTTTCTAGACCAT

BO04728.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rbm13-RB 1032 CG10648-PB 1..1029 17..1045 5145 100 Plus
Rbm13-RA 1032 CG10648-PA 1..1029 17..1045 5145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rbm13-RB 1535 CG10648-RB 99..1128 16..1045 5150 100 Plus
Rbm13-RA 1238 CG10648-RA 99..1128 16..1045 5150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8901998..8902812 79..893 4075 100 Plus
X 23542271 X 8903200..8903354 891..1045 775 100 Plus
X 23542271 X 8901880..8901926 32..78 235 100 Plus
Blast to na_te.dros performed 2014-11-27 10:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
frogger 2483 frogger FROGGER 2483bp 1932..1971 817..778 110 75 Minus

BO04728.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:42 Download gff for BO04728.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 1..1032 17..1046 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:36 Download gff for BO04728.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 106..1142 13..1051 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:11 Download gff for BO04728.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 108..1136 17..1047 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:42 Download gff for BO04728.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 106..1142 13..1051 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:49 Download gff for BO04728.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 100..1128 17..1047 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:49 Download gff for BO04728.complete
Subject Subject Range Query Range Percent Splice Strand
X 8901880..8901926 32..78 100 -> Plus
X 8901998..8902811 79..892 100 -> Plus
X 8903202..8903354 893..1047 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:11 Download gff for BO04728.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8795913..8795959 32..78 100 -> Plus
arm_X 8796031..8796844 79..892 100 -> Plus
arm_X 8797235..8797387 893..1047 98   Plus

BO04728.pep Sequence

Translation from 16 to 1063

> BO04728.pep
MQHDDVVWSIINKSFCSHKVKTDTRTFCRHEYNLTGLCTRRTCPLANSQY
ATVREEKGIIYLFIKTAERAHMPSKLWERIKLSRNFEKAIEQINENLVFW
PKYMIAKNKQRFLKITQYLIRMRRLKLRRQKLIVPLSTKIERREARREEK
ALVAAKIDNHIEKALMDRLKNGTYRDIYNFSQTAFNKALEAERVDEDDEE
ELDDEDENEEQLEREMEVDGDDSREAEEVQRSLLDEEFVEADTDDEEEDD
DDDDDDDEDDYDSDSGKREEVEVGSDFEESDEDDDADADDIEETKVPAKK
TASKAKKDKKSPAGNSRRSRSKPKLQLEYEYEVEKEAQRQMRHASFLDH

BO04728.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
Rbm13-PB 343 CG10648-PB 1..343 1..343 1775 100 Plus
Rbm13-PA 343 CG10648-PA 1..343 1..343 1775 100 Plus
l(2)01289-PG 1191 CG9432-PG 861..978 195..311 188 33.9 Plus
l(2)01289-PM 1193 CG9432-PM 861..978 195..311 188 33.9 Plus
l(2)01289-PG 1191 CG9432-PG 695..887 133..310 187 29.5 Plus
l(2)01289-PM 1193 CG9432-PM 695..887 133..310 187 29.5 Plus
l(2)01289-PG 1191 CG9432-PG 843..937 195..290 177 36.1 Plus
l(2)01289-PM 1193 CG9432-PM 843..937 195..290 177 36.1 Plus
l(2)01289-PG 1191 CG9432-PG 802..914 195..295 171 37.2 Plus
l(2)01289-PM 1193 CG9432-PM 802..914 195..295 171 37.2 Plus
Asph-PB 382 CG8421-PB 181..372 158..345 164 27 Plus
l(2)01289-PG 1191 CG9432-PG 822..977 192..342 159 23.7 Plus
l(2)01289-PM 1193 CG9432-PM 822..977 192..342 159 23.7 Plus
l(2)01289-PG 1191 CG9432-PG 791..899 190..293 158 31.2 Plus
l(2)01289-PM 1193 CG9432-PM 791..899 190..293 158 31.2 Plus
l(2)01289-PG 1191 CG9432-PG 879..975 186..287 154 34.3 Plus
l(2)01289-PM 1193 CG9432-PM 879..975 186..287 154 34.3 Plus