Clone Sequence Records
BO04729.3prime Sequence
905 bp (760 high quality bases) assembled on 2005-12-01
> BO04729.3prime
ATGGTCTAGAAAGCTTGCCTCCTCTCTCCGTTCCGTTGTCGCAACTCTTG
CTCCTGCTCTTGATCCTGCTCCTCCGGCAGATCCTTTATCCGATGGCGCA
CTGCTGATCGACTTGTTCTTGGAGCGCGCCGAGCCATTGGTCAGACGTGC
ATTCCCCGAACTGTCTGTGAGATCCTCACTATCACTGGAACGTATGTCAC
CGGACATCAGACCCTTCTGCAGAGAGTCGACAACAATCTTGAGGATCATG
TATGTCCAGATGACGTGCAGGACGAGCAGCATCAGAAGCAGTGAGTTGAA
GATGTAGTAGGCTGGGAACATGGGCAGAATGCGCGGTGCTTCCACGGATG
AGCTATAAATGATGCGTGGATAGAAGCCCAGACGCGTAACAATCCACACC
ACTGTGAAGATGGCAAAGATTGCATCGCAGAGCTTCTGATATTTGGCATA
TTTGGTGAGTTTGGCGGCCTCCAAGAAGATGTCAGCACAATCGTGAACGA
CTAGGACGAGCGAACCGACGCGATGCAGATTGCACACCCAGCTGAGCGAC
ATTAGGAGCAGGGTGACCATGTGATGGATGAACATCTGCCAGAAGTCCTT
GCGTTTCACATCGAAGAACTGGGTGCCAGTGAGTGACCAGTAGAAGGACA
TCGAAATCATGTAGTACCACCAGATATCATTGCTGATCGACTGATGCGGG
TAGCCGTACCAGCAGCTCTTCACATCCCAAAACCAGGGCTTGTCCCACAG
CACGATCACGCCAAAGATGAAGCTGTACAGATAGTAGATGCAACGCCACG
TGTTCTCGCAGAACTTCACCAGCGTTGACGGTTTATCCTGGGCCCTGCGT
AGACGCCACCAGCGCTCGATTTCGCGCTCGCTCATATCCGTCTGCTTGGA
CAGCG
BO04729.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3576-PA | 1203 | Lag1-RA | 314..1200 | 905..19 | 4435 | 100 | Minus |
| CG3576-PB | 1203 | Lag1-RB | 314..1200 | 905..19 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| schlank-RB | 2487 | CG3576-RB | 951..1837 | 905..19 | 4435 | 100 | Minus |
| schlank-RA | 2201 | CG3576-RA | 665..1551 | 905..19 | 4435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6258897..6259237 | 353..693 | 1705 | 100 | Plus |
| X | 23542271 | X | 6259312..6259526 | 691..905 | 1075 | 100 | Plus |
| X | 23542271 | X | 6258318..6258507 | 19..208 | 950 | 100 | Plus |
| X | 23542271 | X | 6258650..6258796 | 208..354 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:39:29 has no hits.
BO04729.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:02 Download gff for
BO04729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lag1-PB | 314..1203 | 18..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:55 Download gff for
BO04729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3576-PB | 314..1203 | 18..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:39 Download gff for
BO04729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| schlank-RA | 665..1556 | 12..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:29 Download gff for
BO04729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| schlank-RA | 665..1556 | 12..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:29 Download gff for
BO04729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6258313..6258506 | 12..207 | 98 | <- | Plus |
| X | 6258650..6258794 | 208..352 | 100 | <- | Plus |
| X | 6258897..6259234 | 353..690 | 100 | <- | Plus |
| X | 6259312..6259526 | 691..905 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:39 Download gff for
BO04729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6152346..6152539 | 12..207 | 98 | <- | Plus |
| arm_X | 6152683..6152827 | 208..352 | 100 | <- | Plus |
| arm_X | 6152930..6153267 | 353..690 | 100 | <- | Plus |
| arm_X | 6153345..6153559 | 691..905 | 100 | | Plus |
BO04729.5prime Sequence
911 bp (854 high quality bases) assembled on 2005-11-29
> BO04729.5prime
GAAGTTATCAGTCGACATGGACATATTGAATGAGTTCAGCAATGTATTCT
GGAGTACGCACATTTGGCTGCCGCCGAACACAACCTGGGCGGACATTGCG
CCCGGCTCGCGTCCAGATGTGGTGCACGCCAACTACAAGGACCTCATATG
GCCCATTCCATTCGCCGCTGTTGTCATGCTGGTCCGCTACACGCTGGAGC
GTTTCTGGATATCGCCCGTAGGCAAATCACTTGGCATACGTAGTTCTAGG
CCTAAGAAAGCGGCAAATGTTCCTATTCTGGAGAAGACCTATGCCAAATC
GACGCGATTGGACAAGAAAAAGCTGGTTCCGCTGTCCAAGCAGACGGATA
TGAGCGAGCGCGAAATCGAGCGCTGGTGGCGTCTACGCAGGGCCCAGGAT
AAACCGTCAACGCTGGTGAAGTTCTGCGAGAACACGTGGCGTTGCATCTA
CTATCTGTACAGCTTCATCTTTGGCGTGATCGTGCTGTGGGACAAGCCCT
GGTTTTGGGATGTGAAGAGCTGCTGGTACGGCTACCCGCATCAGTCGATC
AGCAATGATATCTGGTGGTACTACATGATTTCGATGTCCTTCTACTGGTC
ACTCACTGGCACCCAGTTCTTCGATGTGAAACGCAAGGACTTCTGGCAGA
TGTTCATCCATCACATGGTCACCCTGCTCCTAATGTCGCTCAGCTGGGTG
TGCAATCTGCATCGCGTCGGTTCGCTCGTCCTAGTCGTTCACGATTGTGC
TGACATCTTCTTGGAGGCCGCCAAACTCACCAAATATGCCAAATATCAGA
AGCTCTGCGATGCAATCTTTGCCATCTTCACAGTGGTGTGGATTGTTACG
CGTCTGGGCTTCTATCCACGCATCATTTATAGCTCATCCGTGGAAGCACC
GCGCATTCTGC
BO04729.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3576-PA | 1203 | Lag1-RA | 1..895 | 17..911 | 4475 | 100 | Plus |
| CG3576-PB | 1203 | Lag1-RB | 1..895 | 17..911 | 4475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| schlank-RB | 2487 | CG3576-RB | 636..1532 | 15..911 | 4485 | 100 | Plus |
| schlank-RA | 2201 | CG3576-RA | 350..1246 | 15..911 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6258897..6259237 | 882..542 | 1705 | 100 | Minus |
| X | 23542271 | X | 6259312..6259535 | 544..321 | 1120 | 100 | Minus |
| X | 23542271 | X | 6266407..6266593 | 201..15 | 935 | 100 | Minus |
| X | 23542271 | X | 6259604..6259725 | 322..201 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:13:36 has no hits.
BO04729.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:03 Download gff for
BO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lag1-PB | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:56 Download gff for
BO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3576-PB | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:17 Download gff for
BO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| schlank-RA | 345..1246 | 9..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:16 Download gff for
BO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| schlank-RA | 345..1246 | 9..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:16 Download gff for
BO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6259312..6259533 | 323..544 | 100 | <- | Minus |
| X | 6259604..6259724 | 202..322 | 100 | <- | Minus |
| X | 6266407..6266598 | 9..201 | 98 | | Minus |
| X | 6258897..6259234 | 545..882 | 100 | <- | Minus |
| X | 6258766..6258794 | 883..911 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:17 Download gff for
BO04729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6152799..6152827 | 883..911 | 100 | <- | Minus |
| arm_X | 6152930..6153267 | 545..882 | 100 | <- | Minus |
| arm_X | 6153345..6153566 | 323..544 | 100 | <- | Minus |
| arm_X | 6153637..6153757 | 202..322 | 100 | <- | Minus |
| arm_X | 6160440..6160631 | 9..201 | 98 | | Minus |
BO04729.complete Sequence
1234 bp (1234 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629854
> BO04729.complete
GAAGTTATCAGTCGACATGGACATATTGAATGAGTTCAGCAATGTATTCT
GGAGTACGCACATTTGGCTGCCGCCGAACACAACCTGGGCGGACATTGCG
CCCGGCTCGCGTCCAGATGTGGTGCACGCCAACTACAAGGACCTCATATG
GCCCATTCCATTCGCCGCTGTTGTCATGCTGGTCCGCTACACGCTGGAGC
GTTTCTGGATATCGCCCGTAGGCAAATCACTTGGCATACGTAGTTCTAGG
CCTAAGAAAGCGGCAAATGTTCCTATTCTGGAGAAGACCTATGCCAAATC
GACGCGATTGGACAAGAAAAAGCTGGTTCCGCTGTCCAAGCAGACGGATA
TGAGCGAGCGCGAAATCGAGCGCTGGTGGCGTCTACGCAGGGCCCAGGAT
AAACCGTCAACGCTGGTGAAGTTCTGCGAGAACACGTGGCGTTGCATCTA
CTATCTGTACAGCTTCATCTTTGGCGTGATCGTGCTGTGGGACAAGCCCT
GGTTTTGGGATGTGAAGAGCTGCTGGTACGGCTACCCGCATCAGTCGATC
AGCAATGATATCTGGTGGTACTACATGATTTCGATGTCCTTCTACTGGTC
ACTCACTGGCACCCAGTTCTTCGATGTGAAACGCAAGGACTTCTGGCAGA
TGTTCATCCATCACATGGTCACCCTGCTCCTAATGTCGCTCAGCTGGGTG
TGCAATCTGCATCGCGTCGGTTCGCTCGTCCTAGTCGTTCACGATTGTGC
TGACATCTTCTTGGAGGCCGCCAAACTCACCAAATATGCCAAATATCAGA
AGCTCTGCGATGCAATCTTTGCCATCTTCACAGTGGTGTGGATTGTTACG
CGTCTGGGCTTCTATCCACGCATCATTTATAGCTCATCCGTGGAAGCACC
GCGCATTCTGCCCATGTTCCCAGCCTACTACATCTTCAACTCACTGCTTC
TGATGCTGCTCGTCCTGCACGTCATCTGGACATACATGATCCTCAAGATT
GTTGTCGACTCTCTGCAGAAGGGTCTGATGTCCGGTGACATACGTTCCAG
TGATAGTGAGGATCTCACAGACAGTTCGGGGAATGCACGTCTGACCAATG
GCTCGGCGCGCTCCAAGAACAAGTCGATCAGCAGTGCGCCATCGGATAAA
GGATCTGCCGGAGGAGCAGGATCAAGAGCAGGAGCAAGAGTTGCGACAAC
GGAACGGAGAGAGGAGGCAAGCTTTCTAGACCAT
BO04729.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| schlank-RB | 1203 | CG3576-PB | 1..1200 | 17..1216 | 6000 | 100 | Plus |
| schlank-RA | 1203 | CG3576-PA | 1..1200 | 17..1216 | 6000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| schlank-RB | 2487 | CG3576-RB | 636..1837 | 15..1216 | 6010 | 100 | Plus |
| schlank-RA | 2201 | CG3576-RA | 350..1551 | 15..1216 | 6010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6258897..6259237 | 882..542 | 1705 | 100 | Minus |
| X | 23542271 | X | 6259312..6259535 | 544..321 | 1120 | 100 | Minus |
| X | 23542271 | X | 6258318..6258507 | 1216..1027 | 950 | 100 | Minus |
| X | 23542271 | X | 6266407..6266593 | 201..15 | 935 | 100 | Minus |
| X | 23542271 | X | 6258650..6258796 | 1027..881 | 735 | 100 | Minus |
| X | 23542271 | X | 6259604..6259725 | 322..201 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:06:11 has no hits.
BO04729.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:27 Download gff for
BO04729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lag1-RB | 1..1203 | 17..1217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:14 Download gff for
BO04729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lag1-RB | 630..1841 | 9..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:22 Download gff for
BO04729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| schlank-RA | 352..1551 | 17..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:27 Download gff for
BO04729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lag1-RB | 630..1841 | 9..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:25 Download gff for
BO04729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| schlank-RA | 352..1551 | 17..1218 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:25 Download gff for
BO04729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6258314..6258506 | 1028..1218 | 98 | <- | Minus |
| X | 6258650..6258794 | 883..1027 | 100 | <- | Minus |
| X | 6258897..6259234 | 545..882 | 100 | <- | Minus |
| X | 6259312..6259533 | 323..544 | 100 | <- | Minus |
| X | 6259604..6259724 | 202..322 | 100 | <- | Minus |
| X | 6266407..6266591 | 17..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:22 Download gff for
BO04729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6152347..6152539 | 1028..1218 | 98 | <- | Minus |
| arm_X | 6152683..6152827 | 883..1027 | 100 | <- | Minus |
| arm_X | 6152930..6153267 | 545..882 | 100 | <- | Minus |
| arm_X | 6153345..6153566 | 323..544 | 100 | <- | Minus |
| arm_X | 6153637..6153757 | 202..322 | 100 | <- | Minus |
| arm_X | 6160440..6160624 | 17..201 | 100 | | Minus |
BO04729.pep Sequence
Translation from 16 to 1234
> BO04729.pep
MDILNEFSNVFWSTHIWLPPNTTWADIAPGSRPDVVHANYKDLIWPIPFA
AVVMLVRYTLERFWISPVGKSLGIRSSRPKKAANVPILEKTYAKSTRLDK
KKLVPLSKQTDMSEREIERWWRLRRAQDKPSTLVKFCENTWRCIYYLYSF
IFGVIVLWDKPWFWDVKSCWYGYPHQSISNDIWWYYMISMSFYWSLTGTQ
FFDVKRKDFWQMFIHHMVTLLLMSLSWVCNLHRVGSLVLVVHDCADIFLE
AAKLTKYAKYQKLCDAIFAIFTVVWIVTRLGFYPRIIYSSSVEAPRILPM
FPAYYIFNSLLLMLLVLHVIWTYMILKIVVDSLQKGLMSGDIRSSDSEDL
TDSSGNARLTNGSARSKNKSISSAPSDKGSAGGAGSRAGARVATTERREE
ASFLDH
BO04729.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| schlank-PB | 400 | CG3576-PB | 1..400 | 1..400 | 2142 | 100 | Plus |
| schlank-PA | 400 | CG3576-PA | 1..400 | 1..400 | 2142 | 100 | Plus |
