Clone Sequence Records
BO04730.3prime Sequence
959 bp (776 high quality bases) assembled on 2005-12-01
> BO04730.3prime
ATGGTCTAGAAAGCTTGCGTGACTGATCTTTTGCAGCTTTTGCAATACTT
TGAGACCCTGTTCCTGATACTCCTGCTTGGACATCCAGAAGCCGTCGCGA
TCCTTTGTCACCTCCGCCAGAACAGCTCCGCCGATAAAGACCATATCCTT
GCGTCGCGGTGGATCCTCAATGCGTATTTTGAATTTCGCCAGCTTTTCCG
TATCGTTCTTGAGTACCCGCTCCAGGTACAGCTGTTTGATCTCACGCTCC
AGCCGACTGGGAAGACCCGGATACATGGTGGAGCCGCCGGACAGAACTAT
GTGCTTGTAGAGTTCGGGCCGTATGTCGATGTCTGCCGCCTGGATGGTGT
TGAAGGCCAGTTCCGCAATGCCCGGTCCCTCGACGTTGATCAAATGCGGC
TGGAACAGAGCCTCTGGCGCCTCAAATCTCTCGCCACCGACCTTGATAAC
ACGACCGTCGGGTAGCGTGTACGATTCCACCAGCACCGTCGTCTCCAGGG
CCAAACGCTGCTCCATCTCGATGTCGTAGCCAATGTAGCAGAGCTTCTCC
TTCATTATGCGAACCGTTTCGAAGTCGGCGGAATGATTGAAAGCGTAGCC
ACGTAGTAACAGTAACTTAATCAAATAGCGAGTGATATCCCGACCGGCAA
TGTCCAATCGTCGCGTCAGATGGGGCAGGGCAAACTCCTCGTAGACGGGA
CATATATGCGTTACACCATCGCCCGAATCGATCACCACGCCAGAGATCAG
ACCCTGGGCATATAGCGTCAGCACGGCCTGGATGGCAATGTACGCCGAAT
CGAAGCCATATTTCTCGAACATCACCTNCATCATCTTCTCGCGATTCTTT
GTGGGATTCATGGGCGGCTCGGTTAGCAGGATTTTTTGTGTTCGTCGGAT
CGATGTCCATCTTTTTGGGACCGAACGTGTAGTCCCCACCGTGGCACATG
TCGTCCCAG
BO04730.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9901-PA | 1185 | Arp14D-RA | 315..1182 | 886..19 | 4296 | 99.7 | Minus |
CG9901-PA | 1185 | Arp14D-RA | 266..319 | 936..883 | 270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:28:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp2-RC | 2217 | CG9901-RC | 818..1757 | 959..19 | 4609 | 99.5 | Minus |
Arp2-RB | 2475 | CG9901-RB | 581..1520 | 959..19 | 4609 | 99.5 | Minus |
Arp2-RA | 2219 | CG9901-RA | 820..1759 | 959..19 | 4609 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:28:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16549478..16549908 | 187..617 | 2155 | 100 | Plus |
X | 23542271 | X | 16549977..16550188 | 616..827 | 1060 | 100 | Plus |
X | 23542271 | X | 16549245..16549413 | 19..187 | 845 | 100 | Plus |
X | 23542271 | X | 16550246..16550382 | 822..959 | 569 | 95.7 | Plus |
Blast to na_te.dros performed 2015-02-04 19:28:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 1215..1270 | 749..804 | 127 | 69.6 | Plus |
BO04730.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:04 Download gff for
BO04730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9901-PA | 243..1185 | 18..959 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:57 Download gff for
BO04730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9901-PA | 243..1185 | 18..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:32 Download gff for
BO04730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp2-RA | 820..1759 | 19..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:34:07 Download gff for
BO04730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp2-RA | 820..1759 | 19..959 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:34:07 Download gff for
BO04730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16549245..16549412 | 19..186 | 100 | <- | Plus |
X | 16549478..16549906 | 187..615 | 100 | <- | Plus |
X | 16549977..16550186 | 616..825 | 100 | <- | Plus |
X | 16550250..16550382 | 826..959 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:32 Download gff for
BO04730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16443278..16443445 | 19..186 | 100 | <- | Plus |
arm_X | 16443511..16443939 | 187..615 | 100 | <- | Plus |
arm_X | 16444010..16444219 | 616..825 | 100 | <- | Plus |
arm_X | 16444283..16444415 | 826..959 | 96 | | Plus |
BO04730.5prime Sequence
859 bp (858 high quality bases) assembled on 2005-11-29
> BO04730.5prime
GAAGTTATCAGTCGACATGGACAGCAAGGGTCGAAATGTTATCGTCTGTG
ATAACGGCACTGGGTTCGTTAAGTGCGGATATGCCGGCAGCAATTTCCCC
ACCCACATTTTTCCCTCGATGGTGGGACGACCCATGATTCGGGCGGTCAA
CAAAATCGGCGATATCGAAGTCAAGGATCTGATGGTCGGCGATGAGGCCT
CACAGCTGCGATCCCTGCTGGAGGTCTCCTATCCGATGGAGAACGGTGTG
GTGCGCAACTGGGACGACATGTGCCACGTGTGGGACTACACGTTCGGTCC
CAAAAAGATGGACATCGATCCGACGAACACAAAAATCCTGCTAACCGAGC
CGCCCATGAATCCCACAAAGAATCGCGAGAAGATGATTGAGGTGATGTTC
GAGAAATATGGCTTCGATTCGGCGTACATTGCCATCCAGGCCGTGCTGAC
GCTATATGCCCAGGGTCTGATCTCTGGCGTGGTGATCGATTCGGGCGATG
GTGTAACGCATATATGTCCCGTCTACGAGGAGTTTGCCCTGCCCCATCTG
ACGCGACGATTGGACATTGCCGGTCGGGATATCACTCGCTATTTGATTAA
GTTACTGTTACTACGTGGCTACGCTTTCAATCATTCCGCCGACTTCGAAA
CGGTTCGCATAATGAAGGAGAAGCTCTGCTACATTGGCTACGACATCGAG
ATGGAGCAGCGTTTGGCCCTGGAGACGACGGTGCTGGTGGAATCGTACAC
GCTACCCGACGGTCGTGTTATCAAGGTCGGTGGCGAGAGATTTGAGGCGC
CAGAGGCTCTGTTCCAGCCGCATTTGATCAACGTCGAGGGACCGGGCATT
GCGGAACTG
BO04730.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9901-PA | 1185 | Arp14D-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:47:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp2-RB | 2475 | CG9901-RB | 338..1181 | 16..859 | 4220 | 100 | Plus |
Arp2-RA | 2219 | CG9901-RA | 577..1420 | 16..859 | 4220 | 100 | Plus |
Arp2-RC | 2217 | CG9901-RC | 560..1418 | 16..859 | 4060 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16549649..16549908 | 859..600 | 1300 | 100 | Minus |
X | 23542271 | X | 16550246..16550467 | 395..174 | 1110 | 100 | Minus |
X | 23542271 | X | 16549977..16550188 | 601..390 | 1060 | 100 | Minus |
X | 23542271 | X | 16552339..16552451 | 176..64 | 565 | 100 | Minus |
X | 23542271 | X | 16553344..16553392 | 64..16 | 245 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 04:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 1215..1270 | 468..413 | 127 | 69.6 | Minus |
BO04730.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:05 Download gff for
BO04730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9901-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:58 Download gff for
BO04730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9901-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:33 Download gff for
BO04730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp2-RA | 568..1420 | 8..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:25 Download gff for
BO04730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp2-RA | 568..1420 | 8..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:25 Download gff for
BO04730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16552340..16552450 | 65..175 | 100 | <- | Minus |
X | 16553344..16553397 | 8..64 | 92 | | Minus |
X | 16549649..16549906 | 602..859 | 100 | <- | Minus |
X | 16549977..16550186 | 392..601 | 100 | <- | Minus |
X | 16550250..16550465 | 176..391 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:33 Download gff for
BO04730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16443682..16443939 | 602..859 | 100 | <- | Minus |
arm_X | 16444010..16444219 | 392..601 | 100 | <- | Minus |
arm_X | 16444283..16444498 | 176..391 | 100 | <- | Minus |
arm_X | 16446373..16446483 | 65..175 | 100 | <- | Minus |
arm_X | 16447377..16447430 | 8..64 | 92 | | Minus |
BO04730.complete Sequence
1216 bp (1216 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629855
> BO04730.complete
GAAGTTATCAGTCGACATGGACAGCAAGGGTCGAAATGTTATCGTCTGTG
ATAACGGCACTGGGTTCGTTAAGTGCGGATATGCCGGCAGCAATTTCCCC
ACCCACATTTTTCCCTCGATGGTGGGACGACCCATGATTCGGGCGGTCAA
CAAAATCGGCGATATCGAAGTCAAGGATCTGATGGTCGGCGATGAGGCCT
CACAGCTGCGATCCCTGCTGGAGGTCTCCTATCCGATGGAGAACGGTGTG
GTGCGCAACTGGGACGACATGTGCCACGTGTGGGACTACACGTTCGGTCC
CAAAAAGATGGACATCGATCCGACGAACACAAAAATCCTGCTAACCGAGC
CGCCCATGAATCCCACAAAGAATCGCGAGAAGATGATTGAGGTGATGTTC
GAGAAATATGGCTTCGATTCGGCGTACATTGCCATCCAGGCCGTGCTGAC
GCTATATGCCCAGGGTCTGATCTCTGGCGTGGTGATCGATTCGGGCGATG
GTGTAACGCATATATGTCCCGTCTACGAGGAGTTTGCCCTGCCCCATCTG
ACGCGACGATTGGACATTGCCGGTCGGGATATCACTCGCTATTTGATTAA
GTTACTGTTACTACGTGGCTACGCTTTCAATCATTCCGCCGACTTCGAAA
CGGTTCGCATAATGAAGGAGAAGCTCTGCTACATTGGCTACGACATCGAG
ATGGAGCAGCGTTTGGCCCTGGAGACGACGGTGCTGGTGGAATCGTACAC
GCTACCCGACGGTCGTGTTATCAAGGTCGGTGGCGAGAGATTTGAGGCGC
CAGAGGCTCTGTTCCAGCCGCATTTGATCAACGTCGAGGGACCGGGCATT
GCGGAACTGGCCTTCAACACCATCCAGGCGGCAGACATCGACATACGGCC
CGAACTCTACAAGCACATAGTTCTGTCCGGCGGCTCCACCATGTATCCGG
GTCTTCCCAGTCGGCTGGAGCGTGAGATCAAACAGCTGTACCTGGAGCGG
GTACTCAAGAACGATACGGAAAAGCTGGCGAAATTCAAAATACGCATTGA
GGATCCACCGCGACGCAAGGATATGGTCTTTATCGGCGGAGCTGTTCTGG
CGGAGGTGACAAAGGATCGCGACGGCTTCTGGATGTCCAAGCAGGAGTAT
CAGGAACAGGGTCTCAAAGTATTGCAAAAGCTGCAAAAGATCAGTCACGC
AAGCTTTCTAGACCAT
BO04730.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp2-RB | 1185 | CG9901-PB | 1..1182 | 17..1198 | 5910 | 100 | Plus |
Arp2-RA | 1185 | CG9901-PA | 1..1182 | 17..1198 | 5910 | 100 | Plus |
Arp2-RC | 1200 | CG9901-PC | 1..1197 | 17..1198 | 5725 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp2-RB | 2475 | CG9901-RB | 338..1520 | 16..1198 | 5915 | 100 | Plus |
Arp2-RA | 2219 | CG9901-RA | 577..1759 | 16..1198 | 5915 | 100 | Plus |
Arp2-RC | 2217 | CG9901-RC | 560..1757 | 16..1198 | 5730 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16549478..16549908 | 1030..600 | 2155 | 100 | Minus |
X | 23542271 | X | 16550246..16550467 | 395..174 | 1110 | 100 | Minus |
X | 23542271 | X | 16549977..16550188 | 601..390 | 1060 | 100 | Minus |
X | 23542271 | X | 16549245..16549413 | 1198..1030 | 845 | 100 | Minus |
X | 23542271 | X | 16552339..16552451 | 176..64 | 565 | 100 | Minus |
X | 23542271 | X | 16553344..16553392 | 64..16 | 245 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 1215..1270 | 468..413 | 127 | 69.6 | Minus |
BO04730.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:28 Download gff for
BO04730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp14D-RB | 1..1185 | 17..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:16 Download gff for
BO04730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp14D-RB | 324..1515 | 8..1198 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:06 Download gff for
BO04730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp2-RA | 578..1759 | 17..1200 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:28 Download gff for
BO04730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp14D-RB | 324..1515 | 8..1198 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:25 Download gff for
BO04730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp2-RA | 578..1759 | 17..1200 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:25 Download gff for
BO04730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16549243..16549412 | 1031..1200 | 98 | <- | Minus |
X | 16549478..16549906 | 602..1030 | 100 | <- | Minus |
X | 16549977..16550186 | 392..601 | 100 | <- | Minus |
X | 16550250..16550465 | 176..391 | 100 | <- | Minus |
X | 16552340..16552450 | 65..175 | 100 | <- | Minus |
X | 16553344..16553391 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:06 Download gff for
BO04730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16443276..16443445 | 1031..1200 | 98 | <- | Minus |
arm_X | 16443511..16443939 | 602..1030 | 100 | <- | Minus |
arm_X | 16444010..16444219 | 392..601 | 100 | <- | Minus |
arm_X | 16444283..16444498 | 176..391 | 100 | <- | Minus |
arm_X | 16446373..16446483 | 65..175 | 100 | <- | Minus |
arm_X | 16447377..16447424 | 17..64 | 100 | | Minus |
BO04730.pep Sequence
Translation from 16 to 1216
> BO04730.pep
MDSKGRNVIVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDI
EVKDLMVGDEASQLRSLLEVSYPMENGVVRNWDDMCHVWDYTFGPKKMDI
DPTNTKILLTEPPMNPTKNREKMIEVMFEKYGFDSAYIAIQAVLTLYAQG
LISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLIKLLLLR
GYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVESYTLPDGR
VIKVGGERFEAPEALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYKH
IVLSGGSTMYPGLPSRLEREIKQLYLERVLKNDTEKLAKFKIRIEDPPRR
KDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQKLQKISHASFLDH
BO04730.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp2-PB | 394 | CG9901-PB | 1..394 | 1..394 | 2053 | 100 | Plus |
Arp2-PA | 394 | CG9901-PA | 1..394 | 1..394 | 2053 | 100 | Plus |
Arp2-PC | 399 | CG9901-PC | 1..399 | 1..394 | 2037 | 98.7 | Plus |
Act88F-PA | 376 | CG5178-PA | 9..373 | 9..388 | 919 | 47.6 | Plus |
Act87E-PC | 376 | CG18290-PC | 9..373 | 9..388 | 917 | 47.1 | Plus |