Clone BO04730 Report

Search the DGRC for BO04730

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:47
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptArp14D-RA
Protein status:BO04730.pep: validated full length
Sequenced Size:1216

Clone Sequence Records

BO04730.3prime Sequence

959 bp (776 high quality bases) assembled on 2005-12-01

> BO04730.3prime
ATGGTCTAGAAAGCTTGCGTGACTGATCTTTTGCAGCTTTTGCAATACTT
TGAGACCCTGTTCCTGATACTCCTGCTTGGACATCCAGAAGCCGTCGCGA
TCCTTTGTCACCTCCGCCAGAACAGCTCCGCCGATAAAGACCATATCCTT
GCGTCGCGGTGGATCCTCAATGCGTATTTTGAATTTCGCCAGCTTTTCCG
TATCGTTCTTGAGTACCCGCTCCAGGTACAGCTGTTTGATCTCACGCTCC
AGCCGACTGGGAAGACCCGGATACATGGTGGAGCCGCCGGACAGAACTAT
GTGCTTGTAGAGTTCGGGCCGTATGTCGATGTCTGCCGCCTGGATGGTGT
TGAAGGCCAGTTCCGCAATGCCCGGTCCCTCGACGTTGATCAAATGCGGC
TGGAACAGAGCCTCTGGCGCCTCAAATCTCTCGCCACCGACCTTGATAAC
ACGACCGTCGGGTAGCGTGTACGATTCCACCAGCACCGTCGTCTCCAGGG
CCAAACGCTGCTCCATCTCGATGTCGTAGCCAATGTAGCAGAGCTTCTCC
TTCATTATGCGAACCGTTTCGAAGTCGGCGGAATGATTGAAAGCGTAGCC
ACGTAGTAACAGTAACTTAATCAAATAGCGAGTGATATCCCGACCGGCAA
TGTCCAATCGTCGCGTCAGATGGGGCAGGGCAAACTCCTCGTAGACGGGA
CATATATGCGTTACACCATCGCCCGAATCGATCACCACGCCAGAGATCAG
ACCCTGGGCATATAGCGTCAGCACGGCCTGGATGGCAATGTACGCCGAAT
CGAAGCCATATTTCTCGAACATCACCTNCATCATCTTCTCGCGATTCTTT
GTGGGATTCATGGGCGGCTCGGTTAGCAGGATTTTTTGTGTTCGTCGGAT
CGATGTCCATCTTTTTGGGACCGAACGTGTAGTCCCCACCGTGGCACATG
TCGTCCCAG

BO04730.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9901-PA 1185 Arp14D-RA 315..1182 886..19 4296 99.7 Minus
CG9901-PA 1185 Arp14D-RA 266..319 936..883 270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
Arp2-RC 2217 CG9901-RC 818..1757 959..19 4609 99.5 Minus
Arp2-RB 2475 CG9901-RB 581..1520 959..19 4609 99.5 Minus
Arp2-RA 2219 CG9901-RA 820..1759 959..19 4609 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16549478..16549908 187..617 2155 100 Plus
X 23542271 X 16549977..16550188 616..827 1060 100 Plus
X 23542271 X 16549245..16549413 19..187 845 100 Plus
X 23542271 X 16550246..16550382 822..959 569 95.7 Plus
Blast to na_te.dros performed 2015-02-04 19:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 1215..1270 749..804 127 69.6 Plus

BO04730.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:04 Download gff for BO04730.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9901-PA 243..1185 18..959 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:57 Download gff for BO04730.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9901-PA 243..1185 18..959 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:32 Download gff for BO04730.3prime
Subject Subject Range Query Range Percent Splice Strand
Arp2-RA 820..1759 19..959 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:34:07 Download gff for BO04730.3prime
Subject Subject Range Query Range Percent Splice Strand
Arp2-RA 820..1759 19..959 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:34:07 Download gff for BO04730.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16549245..16549412 19..186 100 <- Plus
X 16549478..16549906 187..615 100 <- Plus
X 16549977..16550186 616..825 100 <- Plus
X 16550250..16550382 826..959 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:32 Download gff for BO04730.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16443278..16443445 19..186 100 <- Plus
arm_X 16443511..16443939 187..615 100 <- Plus
arm_X 16444010..16444219 616..825 100 <- Plus
arm_X 16444283..16444415 826..959 96   Plus

BO04730.5prime Sequence

859 bp (858 high quality bases) assembled on 2005-11-29

> BO04730.5prime
GAAGTTATCAGTCGACATGGACAGCAAGGGTCGAAATGTTATCGTCTGTG
ATAACGGCACTGGGTTCGTTAAGTGCGGATATGCCGGCAGCAATTTCCCC
ACCCACATTTTTCCCTCGATGGTGGGACGACCCATGATTCGGGCGGTCAA
CAAAATCGGCGATATCGAAGTCAAGGATCTGATGGTCGGCGATGAGGCCT
CACAGCTGCGATCCCTGCTGGAGGTCTCCTATCCGATGGAGAACGGTGTG
GTGCGCAACTGGGACGACATGTGCCACGTGTGGGACTACACGTTCGGTCC
CAAAAAGATGGACATCGATCCGACGAACACAAAAATCCTGCTAACCGAGC
CGCCCATGAATCCCACAAAGAATCGCGAGAAGATGATTGAGGTGATGTTC
GAGAAATATGGCTTCGATTCGGCGTACATTGCCATCCAGGCCGTGCTGAC
GCTATATGCCCAGGGTCTGATCTCTGGCGTGGTGATCGATTCGGGCGATG
GTGTAACGCATATATGTCCCGTCTACGAGGAGTTTGCCCTGCCCCATCTG
ACGCGACGATTGGACATTGCCGGTCGGGATATCACTCGCTATTTGATTAA
GTTACTGTTACTACGTGGCTACGCTTTCAATCATTCCGCCGACTTCGAAA
CGGTTCGCATAATGAAGGAGAAGCTCTGCTACATTGGCTACGACATCGAG
ATGGAGCAGCGTTTGGCCCTGGAGACGACGGTGCTGGTGGAATCGTACAC
GCTACCCGACGGTCGTGTTATCAAGGTCGGTGGCGAGAGATTTGAGGCGC
CAGAGGCTCTGTTCCAGCCGCATTTGATCAACGTCGAGGGACCGGGCATT
GCGGAACTG

BO04730.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9901-PA 1185 Arp14D-RA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
Arp2-RB 2475 CG9901-RB 338..1181 16..859 4220 100 Plus
Arp2-RA 2219 CG9901-RA 577..1420 16..859 4220 100 Plus
Arp2-RC 2217 CG9901-RC 560..1418 16..859 4060 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16549649..16549908 859..600 1300 100 Minus
X 23542271 X 16550246..16550467 395..174 1110 100 Minus
X 23542271 X 16549977..16550188 601..390 1060 100 Minus
X 23542271 X 16552339..16552451 176..64 565 100 Minus
X 23542271 X 16553344..16553392 64..16 245 100 Minus
Blast to na_te.dros performed 2015-02-11 04:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 1215..1270 468..413 127 69.6 Minus

BO04730.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:05 Download gff for BO04730.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9901-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:58 Download gff for BO04730.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9901-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:33 Download gff for BO04730.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp2-RA 568..1420 8..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:25 Download gff for BO04730.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp2-RA 568..1420 8..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:25 Download gff for BO04730.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16552340..16552450 65..175 100 <- Minus
X 16553344..16553397 8..64 92   Minus
X 16549649..16549906 602..859 100 <- Minus
X 16549977..16550186 392..601 100 <- Minus
X 16550250..16550465 176..391 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:33 Download gff for BO04730.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16443682..16443939 602..859 100 <- Minus
arm_X 16444010..16444219 392..601 100 <- Minus
arm_X 16444283..16444498 176..391 100 <- Minus
arm_X 16446373..16446483 65..175 100 <- Minus
arm_X 16447377..16447430 8..64 92   Minus

BO04730.complete Sequence

1216 bp (1216 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629855

> BO04730.complete
GAAGTTATCAGTCGACATGGACAGCAAGGGTCGAAATGTTATCGTCTGTG
ATAACGGCACTGGGTTCGTTAAGTGCGGATATGCCGGCAGCAATTTCCCC
ACCCACATTTTTCCCTCGATGGTGGGACGACCCATGATTCGGGCGGTCAA
CAAAATCGGCGATATCGAAGTCAAGGATCTGATGGTCGGCGATGAGGCCT
CACAGCTGCGATCCCTGCTGGAGGTCTCCTATCCGATGGAGAACGGTGTG
GTGCGCAACTGGGACGACATGTGCCACGTGTGGGACTACACGTTCGGTCC
CAAAAAGATGGACATCGATCCGACGAACACAAAAATCCTGCTAACCGAGC
CGCCCATGAATCCCACAAAGAATCGCGAGAAGATGATTGAGGTGATGTTC
GAGAAATATGGCTTCGATTCGGCGTACATTGCCATCCAGGCCGTGCTGAC
GCTATATGCCCAGGGTCTGATCTCTGGCGTGGTGATCGATTCGGGCGATG
GTGTAACGCATATATGTCCCGTCTACGAGGAGTTTGCCCTGCCCCATCTG
ACGCGACGATTGGACATTGCCGGTCGGGATATCACTCGCTATTTGATTAA
GTTACTGTTACTACGTGGCTACGCTTTCAATCATTCCGCCGACTTCGAAA
CGGTTCGCATAATGAAGGAGAAGCTCTGCTACATTGGCTACGACATCGAG
ATGGAGCAGCGTTTGGCCCTGGAGACGACGGTGCTGGTGGAATCGTACAC
GCTACCCGACGGTCGTGTTATCAAGGTCGGTGGCGAGAGATTTGAGGCGC
CAGAGGCTCTGTTCCAGCCGCATTTGATCAACGTCGAGGGACCGGGCATT
GCGGAACTGGCCTTCAACACCATCCAGGCGGCAGACATCGACATACGGCC
CGAACTCTACAAGCACATAGTTCTGTCCGGCGGCTCCACCATGTATCCGG
GTCTTCCCAGTCGGCTGGAGCGTGAGATCAAACAGCTGTACCTGGAGCGG
GTACTCAAGAACGATACGGAAAAGCTGGCGAAATTCAAAATACGCATTGA
GGATCCACCGCGACGCAAGGATATGGTCTTTATCGGCGGAGCTGTTCTGG
CGGAGGTGACAAAGGATCGCGACGGCTTCTGGATGTCCAAGCAGGAGTAT
CAGGAACAGGGTCTCAAAGTATTGCAAAAGCTGCAAAAGATCAGTCACGC
AAGCTTTCTAGACCAT

BO04730.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
Arp2-RB 1185 CG9901-PB 1..1182 17..1198 5910 100 Plus
Arp2-RA 1185 CG9901-PA 1..1182 17..1198 5910 100 Plus
Arp2-RC 1200 CG9901-PC 1..1197 17..1198 5725 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
Arp2-RB 2475 CG9901-RB 338..1520 16..1198 5915 100 Plus
Arp2-RA 2219 CG9901-RA 577..1759 16..1198 5915 100 Plus
Arp2-RC 2217 CG9901-RC 560..1757 16..1198 5730 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16549478..16549908 1030..600 2155 100 Minus
X 23542271 X 16550246..16550467 395..174 1110 100 Minus
X 23542271 X 16549977..16550188 601..390 1060 100 Minus
X 23542271 X 16549245..16549413 1198..1030 845 100 Minus
X 23542271 X 16552339..16552451 176..64 565 100 Minus
X 23542271 X 16553344..16553392 64..16 245 100 Minus
Blast to na_te.dros performed 2014-11-28 00:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 1215..1270 468..413 127 69.6 Minus

BO04730.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:28 Download gff for BO04730.complete
Subject Subject Range Query Range Percent Splice Strand
Arp14D-RB 1..1185 17..1199 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:16 Download gff for BO04730.complete
Subject Subject Range Query Range Percent Splice Strand
Arp14D-RB 324..1515 8..1198 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:06 Download gff for BO04730.complete
Subject Subject Range Query Range Percent Splice Strand
Arp2-RA 578..1759 17..1200 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:28 Download gff for BO04730.complete
Subject Subject Range Query Range Percent Splice Strand
Arp14D-RB 324..1515 8..1198 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:25 Download gff for BO04730.complete
Subject Subject Range Query Range Percent Splice Strand
Arp2-RA 578..1759 17..1200 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:25 Download gff for BO04730.complete
Subject Subject Range Query Range Percent Splice Strand
X 16549243..16549412 1031..1200 98 <- Minus
X 16549478..16549906 602..1030 100 <- Minus
X 16549977..16550186 392..601 100 <- Minus
X 16550250..16550465 176..391 100 <- Minus
X 16552340..16552450 65..175 100 <- Minus
X 16553344..16553391 17..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:06 Download gff for BO04730.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16443276..16443445 1031..1200 98 <- Minus
arm_X 16443511..16443939 602..1030 100 <- Minus
arm_X 16444010..16444219 392..601 100 <- Minus
arm_X 16444283..16444498 176..391 100 <- Minus
arm_X 16446373..16446483 65..175 100 <- Minus
arm_X 16447377..16447424 17..64 100   Minus

BO04730.pep Sequence

Translation from 16 to 1216

> BO04730.pep
MDSKGRNVIVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDI
EVKDLMVGDEASQLRSLLEVSYPMENGVVRNWDDMCHVWDYTFGPKKMDI
DPTNTKILLTEPPMNPTKNREKMIEVMFEKYGFDSAYIAIQAVLTLYAQG
LISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLIKLLLLR
GYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVESYTLPDGR
VIKVGGERFEAPEALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYKH
IVLSGGSTMYPGLPSRLEREIKQLYLERVLKNDTEKLAKFKIRIEDPPRR
KDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQKLQKISHASFLDH

BO04730.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Arp2-PB 394 CG9901-PB 1..394 1..394 2053 100 Plus
Arp2-PA 394 CG9901-PA 1..394 1..394 2053 100 Plus
Arp2-PC 399 CG9901-PC 1..399 1..394 2037 98.7 Plus
Act88F-PA 376 CG5178-PA 9..373 9..388 919 47.6 Plus
Act87E-PC 376 CG18290-PC 9..373 9..388 917 47.1 Plus