Clone Sequence Records
BO04736.3prime Sequence
950 bp (819 high quality bases) assembled on 2005-12-01
> BO04736.3prime
ATGGTCTAGAAAGCTTGCCTCGGCGTAGAGCAGTCGTGAACGTGATTTCC
GGAGGCCGCGAGAGCCTCCACCGCCGATTCCACTGTCTCCGCCCTCGCCA
CATTGCCAGGACTTGGTCTTGGCCCGAAAATATCGAAACTCATCATTGTG
CGCCGGTGCCAGCATTGGTACATATTGGCTGGGCTGGCATAGCTGCGAGT
ATAGACCGAAGAACTCCTTGTACCCATTGTGCAGGATATAAAGTTCAGGA
TAGTCCAGTGCCGGATAGTTGTGGGTATGCTGACTTCTGTCGTTGCTCCG
CAGGTAGCGCAATAGCTTGGGACCCCGTTCCGAGGAGAACTCACAGTGGA
AGACGTAGATGCGTCGATTTTCCTGATTGGAGGTCAGCGTGGGAAACGCC
TCCTGTATCTGCCCACGTGTGTACAAATTCTTCGCTCCCCGTATGTGTCC
GCCAAGGAACTCGTATGGGTAACGGCAGTCTATGATCTCGTATCCGCCCT
GGCTTCCCAATTGTTCATCAAACTCGCCCTGAATCAGTCTGGCCAATGTG
TCACTGGAGATGGTCTTTAGATCACGATGTCTAATGCCTGTCGCCAAACA
GGGCAGGGTACATGGCTTGCTGAGATCTCCGATTAACTCTGGTTCATCTC
CCAGTGCTCTCATGATCTCGGCGTCGTTCATTGATAGAGTTTTCCGTTGC
ATCTTCTTCATGGGCATGTTGGTCTCCTGATCTGGTTCTTGAACCGCTTC
CTCTGGCTGTTCACTGGGATACATGCTAAGGCAGCGACGCAGGGAGCCTT
TTTTGTTGGACATCTCCTCTAAATTGCTTTCCGATTTCAGCTGTCCGCTG
AGGAGCACTTCCAAGTCATCGGGCAACTCAAGATTGTGATTCTCGGCTGA
TTTCATTTCGAACATGTCCATGTACTCATCATCCAGCGAGTTGCCCGACT
BO04736.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4965-PA | 1281 | twe-RA | 347..1278 | 950..19 | 4635 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twe-RD | 1916 | CG4965-RD | 634..1565 | 950..19 | 4645 | 99.9 | Minus |
| twe-RC | 2240 | CG4965-RC | 495..1426 | 950..19 | 4645 | 99.9 | Minus |
| twe-RB | 1803 | CG4965-RB | 521..1452 | 950..19 | 4645 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16260228..16261159 | 19..950 | 4645 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:49:24 has no hits.
BO04736.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:12 Download gff for
BO04736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-PA | 347..1281 | 16..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:25:10 Download gff for
BO04736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4965-PA | 347..1281 | 16..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:43:00 Download gff for
BO04736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RB | 521..1452 | 19..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:48 Download gff for
BO04736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RB | 521..1452 | 19..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:48 Download gff for
BO04736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16260228..16261159 | 19..950 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:43:00 Download gff for
BO04736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16260228..16261159 | 19..950 | 99 | | Plus |
BO04736.5prime Sequence
928 bp (822 high quality bases) assembled on 2005-11-29
> BO04736.5prime
GAAGTTATCAGTCGACATGGCGAGCAAGCGGCTAATGCTCGATGTGGAGG
AAGAAGATGATGAAAGTGGAGCGTGTGGTCAGGAGAATTTCGATCCCCAT
GATGCCGATATGGAATACCAGGCCAAAAGGCGAAAATCAGCCGTGCAGGA
GACTCCGCTGCAATGGATGCTGAAGCGGCATATTCCTGCCAGCACCACCG
TTCTGTCGCCCATCACCGAATTGTCGCAGAATATGAATGGAGCCCGCCTG
GATGGCACTCCCAAGTCCACCCAGAGAATCCCAGCCAACAGGACCCTGAA
TAACTTTAATAGCCTGTCCTCGCGAACACTCGGCAGTTTCAGTAGCTCCT
GCTCGAGTTACGAGTCGGGCAACTCGCTGGATGATGAGTACATGGACATG
TTCGAAATGGAATCAGCCGAGAATCACAATCTTGAGTTGCCCGATGACTT
GGAAGTGCTCCTCAGCGGACAGCTGAAATCGGAAAGCAATTTAGAGGAGA
TGTCCAACAAAAAAGGCTCCCTGCGTCGCTGCCTTAGCATGTATCCCAGT
GAACAGCCAGAGGAAGCGGTTCAAGAACCAGATCAGGAGACCAACATGCC
CATGAAGAAGATGCAACGGAAAACTCTATCAATGAACGACGCCGAGATCA
TGAGAGCACTGGGAGATGAACCAGAGTTAATCGGAGATCTCAGCAAGCCA
TGTACCCTGCCCTGTTTGGCGACAGGCATTAGACATCGTGATCTAAAGAC
CATCTCCAGTGACACATTGGCCAGACTGATTCAGGGCGAGTTTGATGAAC
AATTGGGAAGCCAGGGCGGATACGAGATCATAGACTGCCGTTACCCATAC
GAGTTCCTTGGCGGACACATACGGGGAGCGAAGAATTTGTACACACGTGG
GCAGATACAGGAGGCGTTTCCCACGCTG
BO04736.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4965-PA | 1281 | twe-RA | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twe-RD | 1916 | CG4965-RD | 288..1199 | 17..928 | 4560 | 100 | Plus |
| twe-RC | 2240 | CG4965-RC | 149..1060 | 17..928 | 4560 | 100 | Plus |
| twe-RB | 1803 | CG4965-RB | 175..1086 | 17..928 | 4560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16260594..16261505 | 928..17 | 4560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:39:04 has no hits.
BO04736.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:12 Download gff for
BO04736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-PA | 1..912 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:25:11 Download gff for
BO04736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4965-PA | 1..912 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:00 Download gff for
BO04736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RB | 169..1086 | 7..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:52 Download gff for
BO04736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RB | 169..1086 | 7..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:52 Download gff for
BO04736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16260594..16261505 | 17..928 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:00 Download gff for
BO04736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16260594..16261505 | 17..928 | 100 | | Minus |
BO04736.complete Sequence
1312 bp (1312 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629857
> BO04736.complete
GAAGTTATCAGTCGACATGGCGAGCAAGCGGCTAATGCTCGATGTGGAGG
AAGAAGATGATGAAAGTGGAGCGTGTGGTCAGGAGAATTTCGATCCCCAT
GATGCCGATATGGAATACCAGGCCAAAAGGCGAAAATCAGCCGTGCAGGA
GACTCCGCTGCAATGGATGCTGAAGCGGCATATTCCTGCCAGCACCACCG
TTCTGTCGCCCATCACCGAATTGTCGCAGAATATGAATGGAGCCCGCCTG
GATGGCACTCCCAAGTCCACCCAGAGAATCCCAGCCAACAGGACCCTGAA
TAACTTTAATAGCCTGTCCTCGCGAACACTCGGCAGTTTCAGTAGCTCCT
GCTCGAGTTACGAGTCGGGCAACTCGCTGGATGATGAGTACATGGACATG
TTCGAAATGGAATCAGCCGAGAATCACAATCTTGAGTTGCCCGATGACTT
GGAAGTGCTCCTCAGCGGACAGCTGAAATCGGAAAGCAATTTAGAGGAGA
TGTCCAACAAAAAAGGCTCCCTGCGTCGCTGCCTTAGCATGTATCCCAGT
GAACAGCCAGAGGAAGCGGTTCAAGAACCAGATCAGGAGACCAACATGCC
CATGAAGAAGATGCAACGGAAAACTCTATCAATGAACGACGCCGAGATCA
TGAGAGCACTGGGAGATGAACCAGAGTTAATCGGAGATCTCAGCAAGCCA
TGTACCCTGCCCTGTTTGGCGACAGGCATTAGACATCGTGATCTAAAGAC
CATCTCCAGTGACACATTGGCCAGACTGATTCAGGGCGAGTTTGATGAAC
AATTGGGAAGCCAGGGCGGATACGAGATCATAGACTGCCGTTACCCATAC
GAGTTCCTTGGCGGACACATACGGGGAGCGAAGAATTTGTACACACGTGG
GCAGATACAGGAGGCGTTTCCCACGCTGACCTCCAATCAGGAAAATCGAC
GCATCTACGTCTTCCACTGTGAGTTCTCCTCGGAACGGGGTCCCAAGCTA
TTGCGCTACCTGCGGAGCAACGACAGAAGTCAGCATACCCACAACTATCC
GGCACTGGACTATCCTGAACTTTATATCCTGCACAATGGGTACAAGGAGT
TCTTCGGTCTATACTCGCAGCTATGCCAGCCCAGCCAATATGTACCAATG
CTGGCACCGGCGCACAATGATGAGTTTCGATATTTTCGGGCCAAGACCAA
GTCCTGGCAATGTGGCGAGGGCGGAGACAGTGGAATCGGCGGTGGAGGCT
CTCGCGGCCTCCGGAAATCACGTTCACGACTGCTCTACGCCGAGGCAAGC
TTTCTAGACCAT
BO04736.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twe-RD | 1281 | CG4965-PD | 1..1278 | 17..1294 | 6390 | 100 | Plus |
| twe-RC | 1281 | CG4965-PC | 1..1278 | 17..1294 | 6390 | 100 | Plus |
| twe-RB | 1281 | CG4965-PB | 1..1278 | 17..1294 | 6390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twe-RD | 1916 | CG4965-RD | 288..1565 | 17..1294 | 6390 | 100 | Plus |
| twe-RC | 2240 | CG4965-RC | 149..1426 | 17..1294 | 6390 | 100 | Plus |
| twe-RB | 1803 | CG4965-RB | 175..1452 | 17..1294 | 6390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16260228..16261505 | 1294..17 | 6390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:01:53 has no hits.
BO04736.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:31 Download gff for
BO04736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RA | 1..1281 | 17..1297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:20 Download gff for
BO04736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RA | 280..1563 | 7..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:08 Download gff for
BO04736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RB | 175..1452 | 17..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:31 Download gff for
BO04736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RA | 280..1563 | 7..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:16 Download gff for
BO04736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twe-RB | 175..1452 | 17..1296 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:16 Download gff for
BO04736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16260224..16261505 | 17..1296 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:08 Download gff for
BO04736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16260224..16261505 | 17..1296 | 99 | | Minus |
BO04736.pep Sequence
Translation from 16 to 1312
> BO04736.pep
MASKRLMLDVEEEDDESGACGQENFDPHDADMEYQAKRRKSAVQETPLQW
MLKRHIPASTTVLSPITELSQNMNGARLDGTPKSTQRIPANRTLNNFNSL
SSRTLGSFSSSCSSYESGNSLDDEYMDMFEMESAENHNLELPDDLEVLLS
GQLKSESNLEEMSNKKGSLRRCLSMYPSEQPEEAVQEPDQETNMPMKKMQ
RKTLSMNDAEIMRALGDEPELIGDLSKPCTLPCLATGIRHRDLKTISSDT
LARLIQGEFDEQLGSQGGYEIIDCRYPYEFLGGHIRGAKNLYTRGQIQEA
FPTLTSNQENRRIYVFHCEFSSERGPKLLRYLRSNDRSQHTHNYPALDYP
ELYILHNGYKEFFGLYSQLCQPSQYVPMLAPAHNDEFRYFRAKTKSWQCG
EGGDSGIGGGGSRGLRKSRSRLLYAEASFLDH
BO04736.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twe-PD | 426 | CG4965-PD | 1..426 | 1..426 | 2246 | 100 | Plus |
| twe-PC | 426 | CG4965-PC | 1..426 | 1..426 | 2246 | 100 | Plus |
| twe-PB | 426 | CG4965-PB | 1..426 | 1..426 | 2246 | 100 | Plus |
| twe-PA | 426 | CG4965-PA | 1..426 | 1..426 | 2246 | 100 | Plus |
| stg-PB | 479 | CG1395-PB | 107..478 | 101..423 | 711 | 45.1 | Plus |
