Clone Sequence Records
BO04747.3prime Sequence
516 bp (397 high quality bases) assembled on 2005-12-01
> BO04747.3prime
ATGGTCTAGAAAGCTTGCGCCAGCTTGGTTGATGGGCCGGCTAATACTGT
TCGGCTGTGTCAGCATCTGCAGGTCCGAGCGGAAGCTCCTTGGCAGCCCC
GAGATGTCCAGCTGGTGCTTGAGCACCACCATGGTGGCCAGGGTTTTTAG
AGTGGGCTCAAAGTCGAGCACATGCAGATCGCTGTAGTCGATAAGCGCCA
CACCGGGCGGAACAACTCCGCCAGCCGCTGCGGCTCCGCCCGTCTCTTGA
GTGGGTGAAACAGCTGCCGGCGAGCTGGAGGAGCCGCTCCTTGGACTGGT
GCCGCCAAACAGGAACATCCTAGTGCCCATCACAATGGCGCACTGTCTCC
GACGCGCCGTCGGTGCCTTGCCGTTGGCCCGTATCAGGTTCCACAGCTTG
GTGCGCGGATCGAAGGTGTACAGATCGTTGAAATGCTGATCCAACAGGCC
ATTATAGCCACCGAAGACATATATCAGCTTGTTGTAAACGAACATGCTGT
GGCTGCGTCAACCAAC
BO04747.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12081-PA | 1212 | CG12081-RA | 712..1209 | 516..19 | 2465 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12081-RB | 1964 | CG12081-RB | 1052..1549 | 516..19 | 2475 | 99.8 | Minus |
| CG12081-RA | 1900 | CG12081-RA | 1052..1549 | 516..19 | 2475 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8589862..8590359 | 516..19 | 2475 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:31:43 has no hits.
BO04747.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:22 Download gff for
BO04747.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12081-PA | 712..1212 | 18..516 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:25:25 Download gff for
BO04747.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12081-PA | 712..1212 | 18..516 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:43:03 Download gff for
BO04747.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12081-RA | 1052..1553 | 13..516 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:46:21 Download gff for
BO04747.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12081-RA | 1052..1553 | 13..516 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:46:21 Download gff for
BO04747.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8589862..8590363 | 13..516 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:43:03 Download gff for
BO04747.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8483895..8484396 | 13..516 | 99 | | Minus |
BO04747.5prime Sequence
537 bp (499 high quality bases) assembled on 2005-12-01
> BO04747.5prime
GAAGTTATCAGTCGACATGCTGTGGACGGTGCATCTGGACGGTGGGCCAC
AGCGGGTCAATCACGCAGCGGTGGGCGTGGGCGACTTCATCTACAGCTTT
GGTGGCTACTGCACCGGATACGATTATCGCTACAATGAGCCCATCGATGT
GCACGCCCTGAATGCACACACAATGCGCTGGACTCTGGTGCCCCAGCAGC
TGGACGACGCGGGTGTGCCACTCAAGTATCCGCTGGTGCCCTTCCAGCGC
TACGGACACACGGTGGTGGCCTACAAGGATCGCATCTACATTTGGGGCGG
TCGCAACGACGAGAATCTCTGCAATACCCTCTACTGCTTCGATCCCAAGA
CAGCGCAGTGGTCGAGGCCCCAGGTCACTGGCTGTCTACCCGGAGCGCGG
GATGGTCACTCGGCCTGTGTCATTGGCAATAGTATGTACATCTTCNGTGG
ATTCGTCGATGAGATCAACGAGTTCAGCAGCGATGTGCATTTCCCTTATC
TGAACACATGGAGTGGCGCTATGTTCAGACATTTGGC
BO04747.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12081-PA | 1212 | CG12081-RA | 1..475 | 17..491 | 2356 | 99.7 | Plus |
| CG12081-PA | 1212 | CG12081-RA | 492..522 | 507..537 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12081-RB | 1964 | CG12081-RB | 338..862 | 14..537 | 2529 | 99 | Plus |
| CG12081-RA | 1900 | CG12081-RA | 338..862 | 14..537 | 2529 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8589148..8589672 | 14..537 | 2504 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:38:33 has no hits.
BO04747.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:23 Download gff for
BO04747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12081-PA | 1..522 | 17..537 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:25:26 Download gff for
BO04747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12081-PA | 1..522 | 17..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:16 Download gff for
BO04747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12081-RA | 335..862 | 9..537 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:44 Download gff for
BO04747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12081-RA | 335..862 | 9..537 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:44 Download gff for
BO04747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8589145..8589672 | 9..537 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:16 Download gff for
BO04747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8483178..8483705 | 9..537 | 98 | | Plus |
BO04747.complete Sequence
1243 bp assembled on 2008-08-14
GenBank Submission: FJ629858
> BO04747.complete
GAAGTTATCAGTCGACATGCTGTGGACGGTGCATCTGGACGGTGGGCCAC
AGCGGGTCAATCACGCAGCGGTGGGCGTGGGCGACTTCATCTACAGCTTT
GGTGGCTACTGCACCGGATACGATTATCGCTACAATGAGCCCATCGATGT
GCACGCCCTGAATGCACACACAATGCGCTGGACTCTGGTGCCCCAGCAGC
TGGACGACGCGGGTGTGCCACTCAAGTATCCGCTGGTGCCCTTCCAGCGC
TACGGACACACGGTGGTGGCCTACAAGGATCGCATCTACATTTGGGGCGG
TCGCAACGACGAGAATCTCTGCAATACCCTCTACTGCTTCGATCCCAAGA
CAGCGCAGTGGTCGAGGCCCCAGGTCACTGGCTGTCTACCCGGAGCGCGG
GATGGTCACTCGGCCTGTGTCATTGGCAATAGTATGTACATCTTCGGTGG
ATTCGTCGATGAGATCAACGAGTTCAGCAGCGATGTGCATTCCCTTAATC
TGGACACCATGGAGTGGCGCTATGTTCAGACATTTGGCGTGCCGCCCAGC
TACAGAGATTTTCATGCGTCGGTGGCCTACGAACAGGAGCGAATGTACAT
CTTCGGCGGGCGGGGCGATAAGCACAGTCCGTACCACAGCCAGGAGGAGA
CCTACTGTCACGAGATCGTCTACCTGGACATGAAGACCAAGGTGTGGCAT
CGACCGTTCACGGCCGGTAAGGTGCCCGTTGGTCGACGCAGCCACAGCAT
GTTCGTTTACAACAAGCTGATATATGTCTTCGGTGGCTATAATGGCCTGT
TGGATCAGCATTTCAACGATCTGTACACCTTCGATCCGCGCACCAAGCTG
TGGAACCTGATACGGGCCAACGGCAAGGCACCGACGGCGCGTCGGAGACA
GTGCGCCATTGTGATGGGCACTAGGATGTTCCTGTTTGGCGGCACCAGTC
CAAGGAGCGGCTCCTCCAGCTCGCCGGCAGCTGTTTCACCCACTCAAGAG
ACGGGCGGAGCCGCAGCGGCTGGCGGAGTTGTTCCGCCCGGTGTGGCGCT
TATCGACTACAGCGATCTGCATGTGCTCGACTTTGAGCCCACTCTAAAAA
CCCTGGCCACCATGGTGGTGCTCAAGCACCAGCTGGACATCTCGGGGCTG
CCAAGGAGCTTCCGCTCGGACCTGCAGATGCTGACACAGCCGAACAGTAT
TAGCCGGCCCATCAACCAAGCTGGCGCAAGCTTTCTAGACCAT
BO04747.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12081-RB | 1212 | CG12081-PB | 1..1209 | 17..1225 | 6045 | 100 | Plus |
| CG12081-RA | 1212 | CG12081-PA | 1..1209 | 17..1225 | 6045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12081-RB | 1964 | CG12081-RB | 338..1549 | 14..1225 | 6060 | 100 | Plus |
| CG12081-RA | 1900 | CG12081-RA | 338..1549 | 14..1225 | 6060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8589148..8590359 | 14..1225 | 6060 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:12:58 has no hits.
BO04747.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:05 Download gff for
BO04747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12081-RA | 322..1540 | 9..1231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:44 Download gff for
BO04747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12081-RA | 341..1549 | 17..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:16 Download gff for
BO04747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12081-RA | 328..1536 | 17..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:25 Download gff for
BO04747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12081-RA | 341..1549 | 17..1227 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:25 Download gff for
BO04747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8589151..8590359 | 17..1227 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:44 Download gff for
BO04747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8483184..8484392 | 17..1227 | 99 | | Plus |
BO04747.pep Sequence
Translation from 16 to 1243
> BO04747.pep
MLWTVHLDGGPQRVNHAAVGVGDFIYSFGGYCTGYDYRYNEPIDVHALNA
HTMRWTLVPQQLDDAGVPLKYPLVPFQRYGHTVVAYKDRIYIWGGRNDEN
LCNTLYCFDPKTAQWSRPQVTGCLPGARDGHSACVIGNSMYIFGGFVDEI
NEFSSDVHSLNLDTMEWRYVQTFGVPPSYRDFHASVAYEQERMYIFGGRG
DKHSPYHSQEETYCHEIVYLDMKTKVWHRPFTAGKVPVGRRSHSMFVYNK
LIYVFGGYNGLLDQHFNDLYTFDPRTKLWNLIRANGKAPTARRRQCAIVM
GTRMFLFGGTSPRSGSSSSPAAVSPTQETGGAAAAGGVVPPGVALIDYSD
LHVLDFEPTLKTLATMVVLKHQLDISGLPRSFRSDLQMLTQPNSISRPIN
QAGASFLDH
BO04747.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12081-PB | 403 | CG12081-PB | 1..403 | 1..403 | 2198 | 100 | Plus |
| CG12081-PA | 403 | CG12081-PA | 1..403 | 1..403 | 2198 | 100 | Plus |
| CG3711-PE | 975 | CG3711-PE | 251..541 | 77..314 | 254 | 27.5 | Plus |
| CG3711-PD | 998 | CG3711-PD | 251..541 | 77..314 | 254 | 27.5 | Plus |
| Hcf-PF | 1448 | CG1710-PF | 71..317 | 75..312 | 243 | 25.7 | Plus |
| CG3711-PE | 975 | CG3711-PE | 302..536 | 13..257 | 164 | 25.3 | Plus |
| CG3711-PD | 998 | CG3711-PD | 302..536 | 13..257 | 164 | 25.3 | Plus |
| CG3711-PE | 975 | CG3711-PE | 464..539 | 75..148 | 161 | 42.1 | Plus |
| CG3711-PD | 998 | CG3711-PD | 464..539 | 75..148 | 161 | 42.1 | Plus |
