Clone Sequence Records
BO04765.3prime Sequence
929 bp (838 high quality bases) assembled on 2005-12-01
> BO04765.3prime
ATGGTCTAGAAAGCTTGCAATTGTTTCAGTGCGAGGATCGATCTTGTGTA
TAGCCTGCATGAGGCTCTCGGTGTTCGCCGTGTTGATGCCCTGCTTGGAC
ATGTCAGTCAGTCGGTCGGTGATTGGCTTTTGGTCCTGGCCGCGCTGCCA
CCACAGATGGGCGCAGGTGTGAAGCAGGGGAATGTAGAGCGGCAGCAGAT
CAATATCGCACAACGTCTCGAAGCGACTCAGTGCCAGCAGGGCCCACCTC
TCGGCCGCGTGATGAGGCACTGGGGATGAGGTGCAGGCAGCCACTAGACG
GCAGAGTATCAAAAGCACCGGCCTCGATCGATTCATGTATATCTTGTTCA
GCAAGCGGAAACAGTTCTCCAGAATAGGTATGGCCATTTCGTTACGCCGC
TCATCCAGAAACTGGCACGCCCTGGTCAGTTCGTCGTGCTGCAGGAAGCG
CAGGAAGTACTCCGAGTCCCGGAGCATCGCCTGGCTTGCCACATACGTGA
GGAATGCCTCGAAGGCTGCACTCCGTTCGCCGATCAGCTCGGACTTGAAG
TTACCCATCAGGACCTTGGCTGGGAAGTACTTGTTGGCCATCTCCGCCGG
ATGCTGCCGCTTAAGGCCCAGATAAAGCTCCCGAAAGTCGGTGTATCGGC
GCTCAATCTTTGCCGGCTGAGTGTCCTCCGTGGCTCCATCCTGCTTAACA
GTGAGCTCATAGACCACGAACCGCTTGATCTTCACATCCTCGCCATCGGG
CGGCATTATGTGGGCCAGCAAGATGTCAAAGCGGAGCACGGTGCTCCCAT
CCGTGGTCGGCTTATACTCAGCACTTGTGGCTCGCTCCCAGACACCTTTT
TGGAGCGCCTTATCGGATTCGGGAGGGGGAATGTCGAGGGCCGCCGCCTC
GATGGCTGGACTGTCCAGCTCATCCGGGA
BO04765.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3077-PA | 981 | CG3077-RA | 70..978 | 927..19 | 4545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3077-RB | 2025 | CG3077-RB | 224..1132 | 927..19 | 4545 | 100 | Minus |
CG3077-RA | 1372 | CG3077-RA | 233..1141 | 927..19 | 4545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2764502..2765200 | 149..847 | 3495 | 100 | Plus |
2L | 23513712 | 2L | 2764309..2764442 | 19..152 | 670 | 100 | Plus |
2L | 23513712 | 2L | 2765282..2765365 | 844..927 | 420 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 01:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1158..1239 | 760..678 | 115 | 63.1 | Minus |
BO04765.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:44 Download gff for
BO04765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-PA | 69..981 | 16..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:25:59 Download gff for
BO04765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-PA | 69..981 | 16..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:33 Download gff for
BO04765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 232..1145 | 15..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:36 Download gff for
BO04765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 232..1145 | 15..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:36 Download gff for
BO04765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2764305..2764441 | 15..151 | 98 | <- | Plus |
2L | 2764505..2765198 | 152..845 | 100 | <- | Plus |
2L | 2765284..2765365 | 846..928 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:33 Download gff for
BO04765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2764305..2764441 | 15..151 | 98 | <- | Plus |
arm_2L | 2764505..2765198 | 152..845 | 100 | <- | Plus |
arm_2L | 2765284..2765365 | 846..928 | 98 | | Plus |
BO04765.5prime Sequence
911 bp (883 high quality bases) assembled on 2005-11-29
> BO04765.5prime
GAAGTTATCAGTCGACATGCCCATTCACGCCGTGATGGCCAAGCGCCTGC
ACCACCAGCCTACCTTCGATGGGGATCCACCCGGTCCGGATGAGCTGGAC
AGTCCAGCCATCGAGGCGGCGGCCCTCGACATTCCCCCTCCCGAATCCGA
TAAGGCGCTCCAAAAAGGTGTCTGGGAGCGAGCCACAAGTGCTGAGTATA
AGCCGACCACGGATGGGAGCACCGTGCTCCGCTTTGACATCTTGCTGGCC
CACATAATGCCGCCCGATGGCGAGGATGTGAAGATCAAGCGGTTCGTGGT
CTATGAGCTCACTGTTAAGCAGGATGGAGCCACGGAGGACACTCAGCCGG
CAAAGATTGAGCGCCGATACACCGACTTTCGGGAGCTTTATCTGGGCCTT
AAGCGGCAGCATCCGGCGGAGATGGCCAACAAGTACTTCCCAGCCAAGGT
CCTGATGGGTAACTTCAAGTCCGAGCTGATCGGCGAACGGAGTGCAGCCT
TCGAGGCATTCCTCACGTATGTGGCAAGCCAGGCGATGCTCCGGGACTCG
GAGTACTTCCTGCGCTTCCTGCAGCACGACGAACTGACCAGGGCGTGCCA
GTTTCTGGATGAGCGGCGTAACGAAATGGCCATACCTATTCTGGAGAACT
GTTTCCGCTTGCTGAACAAGATATACATGAATCGATCGAGGCCGGTGCTT
TTGATACTCTGCCGTCTAGTGGCTGCCTGCACCTCATCCCCAGTGCCTCA
TCACGCGGCCGAGAGGTGGGCCCTGCTGGCACTGAGTCGCTTCGAGACGT
TGTGCGATATTGATCTGCTGCCGCTCTACATTCCCCTGCTTCACACCTGC
GCCCATCTGTGGTGGCAGCGCGGCCAGGACCAAAAAGCAATCACCGACCG
ACTGACTGACA
BO04765.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3077-PA | 981 | CG3077-RA | 1..895 | 17..911 | 4425 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3077-RA | 1372 | CG3077-RA | 164..1058 | 17..911 | 4445 | 99.8 | Plus |
CG3077-RB | 2025 | CG3077-RB | 162..1049 | 24..911 | 4410 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2764502..2765200 | 864..166 | 3495 | 100 | Minus |
2L | 23513712 | 2L | 2765282..2765427 | 169..24 | 730 | 100 | Minus |
2L | 23513712 | 2L | 2764392..2764442 | 911..861 | 225 | 96.1 | Minus |
Blast to na_te.dros performed 2015-02-11 15:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1158..1239 | 253..335 | 115 | 63.1 | Plus |
BO04765.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:45 Download gff for
BO04765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:00 Download gff for
BO04765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:21 Download gff for
BO04765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 161..1057 | 13..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:57 Download gff for
BO04765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 161..1057 | 13..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:57 Download gff for
BO04765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2764393..2764441 | 862..910 | 96 | <- | Minus |
2L | 2764505..2765198 | 168..861 | 100 | <- | Minus |
2L | 2765284..2765432 | 20..167 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:21 Download gff for
BO04765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2764393..2764441 | 862..910 | 96 | <- | Minus |
arm_2L | 2764505..2765198 | 168..861 | 100 | <- | Minus |
arm_2L | 2765284..2765432 | 20..167 | 99 | | Minus |
BO04765.complete Sequence
1012 bp (1012 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629861
> BO04765.complete
GAAGTTATCAGTCGACATGCCCATTCACGCCGTGATGGCCAAGCGCCTGC
ACCACCAGCCTACCTTCGATGGGGATCCACCCGGTCCGGATGAGCTGGAC
AGTCCAGCCATCGAGGCGGCGGCCCTCGACATTCCCCCTCCCGAATCCGA
TAAGGCGCTCCAAAAAGGTGTCTGGGAGCGAGCCACAAGTGCTGAGTATA
AGCCGACCACGGATGGGAGCACCGTGCTCCGCTTTGACATCTTGCTGGCC
CACATAATGCCGCCCGATGGCGAGGATGTGAAGATCAAGCGGTTCGTGGT
CTATGAGCTCACTGTTAAGCAGGATGGAGCCACGGAGGACACTCAGCCGG
CAAAGATTGAGCGCCGATACACCGACTTTCGGGAGCTTTATCTGGGCCTT
AAGCGGCAGCATCCGGCGGAGATGGCCAACAAGTACTTCCCAGCCAAGGT
CCTGATGGGTAACTTCAAGTCCGAGCTGATCGGCGAACGGAGTGCAGCCT
TCGAGGCATTCCTCACGTATGTGGCAAGCCAGGCGATGCTCCGGGACTCG
GAGTACTTCCTGCGCTTCCTGCAGCACGACGAACTGACCAGGGCGTGCCA
GTTTCTGGATGAGCGGCGTAACGAAATGGCCATACCTATTCTGGAGAACT
GTTTCCGCTTGCTGAACAAGATATACATGAATCGATCGAGGCCGGTGCTT
TTGATACTCTGCCGTCTAGTGGCTGCCTGCACCTCATCCCCAGTGCCTCA
TCACGCGGCCGAGAGGTGGGCCCTGCTGGCACTGAGTCGCTTCGAGACGT
TGTGCGATATTGATCTGCTGCCGCTCTACATTCCCCTGCTTCACACCTGC
GCCCATCTGTGGTGGCAGCGCGGCCAGGACCAAAAGCCAATCACCGACCG
ACTGACTGACATGTCCAAGCAGGGCATCAACACGGCGAACACCGAGAGCC
TCATGCAGGCTATACACAAGATCGATCCTCGCACTGAAACAATTGCAAGC
TTTCTAGACCAT
BO04765.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3077-RA | 981 | CG3077-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
CG3077-RB | 963 | CG3077-PB | 1..960 | 35..994 | 4800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3077-RA | 1372 | CG3077-RA | 164..1141 | 17..994 | 4890 | 100 | Plus |
CG3077-RB | 2025 | CG3077-RB | 162..1132 | 24..994 | 4855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2764502..2765200 | 864..166 | 3495 | 100 | Minus |
2L | 23513712 | 2L | 2765282..2765427 | 169..24 | 730 | 100 | Minus |
2L | 23513712 | 2L | 2764309..2764442 | 994..861 | 670 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:37:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1158..1239 | 253..335 | 115 | 63.1 | Plus |
BO04765.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:25 Download gff for
BO04765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 1..981 | 17..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:11 Download gff for
BO04765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 182..1166 | 13..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:10 Download gff for
BO04765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 164..1141 | 17..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:25 Download gff for
BO04765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 182..1166 | 13..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:04 Download gff for
BO04765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3077-RA | 164..1141 | 17..996 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:04 Download gff for
BO04765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2764306..2764441 | 862..996 | 98 | <- | Minus |
2L | 2764505..2765198 | 168..861 | 100 | <- | Minus |
2L | 2765284..2765434 | 17..167 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:10 Download gff for
BO04765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2764306..2764441 | 862..996 | 98 | <- | Minus |
arm_2L | 2764505..2765198 | 168..861 | 100 | <- | Minus |
arm_2L | 2765284..2765434 | 17..167 | 98 | | Minus |
BO04765.pep Sequence
Translation from 16 to 1012
> BO04765.pep
MPIHAVMAKRLHHQPTFDGDPPGPDELDSPAIEAAALDIPPPESDKALQK
GVWERATSAEYKPTTDGSTVLRFDILLAHIMPPDGEDVKIKRFVVYELTV
KQDGATEDTQPAKIERRYTDFRELYLGLKRQHPAEMANKYFPAKVLMGNF
KSELIGERSAAFEAFLTYVASQAMLRDSEYFLRFLQHDELTRACQFLDER
RNEMAIPILENCFRLLNKIYMNRSRPVLLILCRLVAACTSSPVPHHAAER
WALLALSRFETLCDIDLLPLYIPLLHTCAHLWWQRGQDQKPITDRLTDMS
KQGINTANTESLMQAIHKIDPRTETIASFLDH
BO04765.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3077-PA | 326 | CG3077-PA | 1..326 | 1..326 | 1715 | 100 | Plus |
CG3077-PB | 320 | CG3077-PB | 1..320 | 7..326 | 1683 | 100 | Plus |