Clone BO04765 Report

Search the DGRC for BO04765

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:47
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG3077-RA
Protein status:BO04765.pep: validated full length
Sequenced Size:1012

Clone Sequence Records

BO04765.3prime Sequence

929 bp (838 high quality bases) assembled on 2005-12-01

> BO04765.3prime
ATGGTCTAGAAAGCTTGCAATTGTTTCAGTGCGAGGATCGATCTTGTGTA
TAGCCTGCATGAGGCTCTCGGTGTTCGCCGTGTTGATGCCCTGCTTGGAC
ATGTCAGTCAGTCGGTCGGTGATTGGCTTTTGGTCCTGGCCGCGCTGCCA
CCACAGATGGGCGCAGGTGTGAAGCAGGGGAATGTAGAGCGGCAGCAGAT
CAATATCGCACAACGTCTCGAAGCGACTCAGTGCCAGCAGGGCCCACCTC
TCGGCCGCGTGATGAGGCACTGGGGATGAGGTGCAGGCAGCCACTAGACG
GCAGAGTATCAAAAGCACCGGCCTCGATCGATTCATGTATATCTTGTTCA
GCAAGCGGAAACAGTTCTCCAGAATAGGTATGGCCATTTCGTTACGCCGC
TCATCCAGAAACTGGCACGCCCTGGTCAGTTCGTCGTGCTGCAGGAAGCG
CAGGAAGTACTCCGAGTCCCGGAGCATCGCCTGGCTTGCCACATACGTGA
GGAATGCCTCGAAGGCTGCACTCCGTTCGCCGATCAGCTCGGACTTGAAG
TTACCCATCAGGACCTTGGCTGGGAAGTACTTGTTGGCCATCTCCGCCGG
ATGCTGCCGCTTAAGGCCCAGATAAAGCTCCCGAAAGTCGGTGTATCGGC
GCTCAATCTTTGCCGGCTGAGTGTCCTCCGTGGCTCCATCCTGCTTAACA
GTGAGCTCATAGACCACGAACCGCTTGATCTTCACATCCTCGCCATCGGG
CGGCATTATGTGGGCCAGCAAGATGTCAAAGCGGAGCACGGTGCTCCCAT
CCGTGGTCGGCTTATACTCAGCACTTGTGGCTCGCTCCCAGACACCTTTT
TGGAGCGCCTTATCGGATTCGGGAGGGGGAATGTCGAGGGCCGCCGCCTC
GATGGCTGGACTGTCCAGCTCATCCGGGA

BO04765.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-PA 981 CG3077-RA 70..978 927..19 4545 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-RB 2025 CG3077-RB 224..1132 927..19 4545 100 Minus
CG3077-RA 1372 CG3077-RA 233..1141 927..19 4545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2764502..2765200 149..847 3495 100 Plus
2L 23513712 2L 2764309..2764442 19..152 670 100 Plus
2L 23513712 2L 2765282..2765365 844..927 420 100 Plus
Blast to na_te.dros performed 2015-02-13 01:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 1158..1239 760..678 115 63.1 Minus

BO04765.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:44 Download gff for BO04765.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-PA 69..981 16..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:25:59 Download gff for BO04765.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-PA 69..981 16..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:33 Download gff for BO04765.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 232..1145 15..928 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:36 Download gff for BO04765.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 232..1145 15..928 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:36 Download gff for BO04765.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2764305..2764441 15..151 98 <- Plus
2L 2764505..2765198 152..845 100 <- Plus
2L 2765284..2765365 846..928 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:33 Download gff for BO04765.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2764305..2764441 15..151 98 <- Plus
arm_2L 2764505..2765198 152..845 100 <- Plus
arm_2L 2765284..2765365 846..928 98   Plus

BO04765.5prime Sequence

911 bp (883 high quality bases) assembled on 2005-11-29

> BO04765.5prime
GAAGTTATCAGTCGACATGCCCATTCACGCCGTGATGGCCAAGCGCCTGC
ACCACCAGCCTACCTTCGATGGGGATCCACCCGGTCCGGATGAGCTGGAC
AGTCCAGCCATCGAGGCGGCGGCCCTCGACATTCCCCCTCCCGAATCCGA
TAAGGCGCTCCAAAAAGGTGTCTGGGAGCGAGCCACAAGTGCTGAGTATA
AGCCGACCACGGATGGGAGCACCGTGCTCCGCTTTGACATCTTGCTGGCC
CACATAATGCCGCCCGATGGCGAGGATGTGAAGATCAAGCGGTTCGTGGT
CTATGAGCTCACTGTTAAGCAGGATGGAGCCACGGAGGACACTCAGCCGG
CAAAGATTGAGCGCCGATACACCGACTTTCGGGAGCTTTATCTGGGCCTT
AAGCGGCAGCATCCGGCGGAGATGGCCAACAAGTACTTCCCAGCCAAGGT
CCTGATGGGTAACTTCAAGTCCGAGCTGATCGGCGAACGGAGTGCAGCCT
TCGAGGCATTCCTCACGTATGTGGCAAGCCAGGCGATGCTCCGGGACTCG
GAGTACTTCCTGCGCTTCCTGCAGCACGACGAACTGACCAGGGCGTGCCA
GTTTCTGGATGAGCGGCGTAACGAAATGGCCATACCTATTCTGGAGAACT
GTTTCCGCTTGCTGAACAAGATATACATGAATCGATCGAGGCCGGTGCTT
TTGATACTCTGCCGTCTAGTGGCTGCCTGCACCTCATCCCCAGTGCCTCA
TCACGCGGCCGAGAGGTGGGCCCTGCTGGCACTGAGTCGCTTCGAGACGT
TGTGCGATATTGATCTGCTGCCGCTCTACATTCCCCTGCTTCACACCTGC
GCCCATCTGTGGTGGCAGCGCGGCCAGGACCAAAAAGCAATCACCGACCG
ACTGACTGACA

BO04765.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-PA 981 CG3077-RA 1..895 17..911 4425 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-RA 1372 CG3077-RA 164..1058 17..911 4445 99.8 Plus
CG3077-RB 2025 CG3077-RB 162..1049 24..911 4410 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2764502..2765200 864..166 3495 100 Minus
2L 23513712 2L 2765282..2765427 169..24 730 100 Minus
2L 23513712 2L 2764392..2764442 911..861 225 96.1 Minus
Blast to na_te.dros performed 2015-02-11 15:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 1158..1239 253..335 115 63.1 Plus

BO04765.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:45 Download gff for BO04765.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:00 Download gff for BO04765.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:21 Download gff for BO04765.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 161..1057 13..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:57 Download gff for BO04765.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 161..1057 13..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:57 Download gff for BO04765.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2764393..2764441 862..910 96 <- Minus
2L 2764505..2765198 168..861 100 <- Minus
2L 2765284..2765432 20..167 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:21 Download gff for BO04765.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2764393..2764441 862..910 96 <- Minus
arm_2L 2764505..2765198 168..861 100 <- Minus
arm_2L 2765284..2765432 20..167 99   Minus

BO04765.complete Sequence

1012 bp (1012 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629861

> BO04765.complete
GAAGTTATCAGTCGACATGCCCATTCACGCCGTGATGGCCAAGCGCCTGC
ACCACCAGCCTACCTTCGATGGGGATCCACCCGGTCCGGATGAGCTGGAC
AGTCCAGCCATCGAGGCGGCGGCCCTCGACATTCCCCCTCCCGAATCCGA
TAAGGCGCTCCAAAAAGGTGTCTGGGAGCGAGCCACAAGTGCTGAGTATA
AGCCGACCACGGATGGGAGCACCGTGCTCCGCTTTGACATCTTGCTGGCC
CACATAATGCCGCCCGATGGCGAGGATGTGAAGATCAAGCGGTTCGTGGT
CTATGAGCTCACTGTTAAGCAGGATGGAGCCACGGAGGACACTCAGCCGG
CAAAGATTGAGCGCCGATACACCGACTTTCGGGAGCTTTATCTGGGCCTT
AAGCGGCAGCATCCGGCGGAGATGGCCAACAAGTACTTCCCAGCCAAGGT
CCTGATGGGTAACTTCAAGTCCGAGCTGATCGGCGAACGGAGTGCAGCCT
TCGAGGCATTCCTCACGTATGTGGCAAGCCAGGCGATGCTCCGGGACTCG
GAGTACTTCCTGCGCTTCCTGCAGCACGACGAACTGACCAGGGCGTGCCA
GTTTCTGGATGAGCGGCGTAACGAAATGGCCATACCTATTCTGGAGAACT
GTTTCCGCTTGCTGAACAAGATATACATGAATCGATCGAGGCCGGTGCTT
TTGATACTCTGCCGTCTAGTGGCTGCCTGCACCTCATCCCCAGTGCCTCA
TCACGCGGCCGAGAGGTGGGCCCTGCTGGCACTGAGTCGCTTCGAGACGT
TGTGCGATATTGATCTGCTGCCGCTCTACATTCCCCTGCTTCACACCTGC
GCCCATCTGTGGTGGCAGCGCGGCCAGGACCAAAAGCCAATCACCGACCG
ACTGACTGACATGTCCAAGCAGGGCATCAACACGGCGAACACCGAGAGCC
TCATGCAGGCTATACACAAGATCGATCCTCGCACTGAAACAATTGCAAGC
TTTCTAGACCAT

BO04765.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-RA 981 CG3077-PA 1..978 17..994 4890 100 Plus
CG3077-RB 963 CG3077-PB 1..960 35..994 4800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-RA 1372 CG3077-RA 164..1141 17..994 4890 100 Plus
CG3077-RB 2025 CG3077-RB 162..1132 24..994 4855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2764502..2765200 864..166 3495 100 Minus
2L 23513712 2L 2765282..2765427 169..24 730 100 Minus
2L 23513712 2L 2764309..2764442 994..861 670 100 Minus
Blast to na_te.dros performed 2014-11-27 07:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 1158..1239 253..335 115 63.1 Plus

BO04765.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:25 Download gff for BO04765.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 1..981 17..997 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:11 Download gff for BO04765.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 182..1166 13..998 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:10 Download gff for BO04765.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 164..1141 17..996 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:25 Download gff for BO04765.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 182..1166 13..998 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:04 Download gff for BO04765.complete
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 164..1141 17..996 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:04 Download gff for BO04765.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2764306..2764441 862..996 98 <- Minus
2L 2764505..2765198 168..861 100 <- Minus
2L 2765284..2765434 17..167 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:10 Download gff for BO04765.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2764306..2764441 862..996 98 <- Minus
arm_2L 2764505..2765198 168..861 100 <- Minus
arm_2L 2765284..2765434 17..167 98   Minus

BO04765.pep Sequence

Translation from 16 to 1012

> BO04765.pep
MPIHAVMAKRLHHQPTFDGDPPGPDELDSPAIEAAALDIPPPESDKALQK
GVWERATSAEYKPTTDGSTVLRFDILLAHIMPPDGEDVKIKRFVVYELTV
KQDGATEDTQPAKIERRYTDFRELYLGLKRQHPAEMANKYFPAKVLMGNF
KSELIGERSAAFEAFLTYVASQAMLRDSEYFLRFLQHDELTRACQFLDER
RNEMAIPILENCFRLLNKIYMNRSRPVLLILCRLVAACTSSPVPHHAAER
WALLALSRFETLCDIDLLPLYIPLLHTCAHLWWQRGQDQKPITDRLTDMS
KQGINTANTESLMQAIHKIDPRTETIASFLDH

BO04765.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-PA 326 CG3077-PA 1..326 1..326 1715 100 Plus
CG3077-PB 320 CG3077-PB 1..320 7..326 1683 100 Plus