Clone Sequence Records
BO04776.3prime Sequence
958 bp (844 high quality bases) assembled on 2005-12-01
> BO04776.3prime
ATGGTCTAGAAAGCTTGCTATTTTCTGAAACTTCGCAATAAAAAAGCCCA
CAGTGTCCGCATTTGCTCCGCTTGGACCGAAGCGCTGCAACAGACGAGAT
TTACATGCCTCGAAACCGGGAAGCGGAAGTCCGGGACCGCCCCACCGGGG
AGTGGCATCTGTTAGCCGCAGCTCGACAAATTTTCTTAGTGCCCAGGCCA
CAAGACATTCGCACTCATCCTCGGTGACGGTGCACGTGCTATATACAAGG
ATGCCGCCAGGACGAACGAGCTGCACTGCCTGTTCAAATAGCCGGCGCTG
AATATGGGGATATGAGGACAAGACCTTAACCTGTTTAATGCTGCAGGACA
ACTGTGGCCGGTTGCCCAGCCCACTGCAGGGTGCATCGAGCAAGATTCGG
TCAAAGCTTTCACATGGAAACGGAGGCCCAGTGAATTCTCCCACGGGTGC
AGATGGAGCGTCCGCTGCCACTGCCTCGGTGGAGTTAAAAACATGCGCCG
TTATGCTTTTGTAGTGTCCCAATTTGGGCAGCATGCTGCGGACGCGACTG
GCCGAATTGTCTAGGGCCACCACAGATCCCCGATCGCCCATCAACTCGGC
TATGTGGCTTGTTTTGTTACCCGGAGCGGCACACATGTCCAGTATGCGCT
CGCCGGGCTGCGGATCCAGGACACGGACGCAAACAATAGAAGGCAGGTTT
TGCAACAGGCCGTCTTCGCTGCTTAGATCCCCCAGCGTGGGCACTCCGCT
GACGTTGGACTGCATTTCCACGGCCACTCCAGAGGCGGGCTTCTCCGCGT
TGTTGAACAGCTGATACCGCTGCATTAACACCTTGCCTGTACCCAGGAAA
ACCTTATTTGGGCTTTCGTACCGCTTGACCGTCCCGCGCTTGCATTTTCC
ATCCAGATCTGCGTAGACATTGACGAGTTCCTCCCGCTCAGTGTTTGACT
CCATAGCT
BO04776.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11109-PB | 1320 | CG11109-RB | 378..1317 | 958..19 | 4700 | 100 | Minus |
CG11109-PA | 1077 | CG11109-RA | 135..1074 | 958..19 | 4700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11109-RA | 1445 | CG11109-RA | 489..1428 | 958..19 | 4700 | 100 | Minus |
CG11109-RB | 1415 | CG11109-RB | 459..1398 | 958..19 | 4700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22872746..22873685 | 958..19 | 4700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:39:50 has no hits.
BO04776.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:57 Download gff for
BO04776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-PB | 378..1320 | 15..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:19 Download gff for
BO04776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-PA | 135..1077 | 15..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:29 Download gff for
BO04776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RB | 459..1401 | 15..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:13 Download gff for
BO04776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RB | 459..1401 | 15..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:13 Download gff for
BO04776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22872746..22873688 | 15..958 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:29 Download gff for
BO04776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22865846..22866788 | 15..958 | 99 | | Minus |
BO04776.5prime Sequence
907 bp (847 high quality bases) assembled on 2005-11-29
> BO04776.5prime
GAAGTTATCAGTCGACATGTTGTGCATTGATCCGCTGGACTCACAGCTCA
CCAAAGCTGTGGCCGACTCCGAGCTCAAGGAGGTAGTGGTTGACACTAAC
TGCGGAGCTGCACTACTGCGAGGCGCCCACATATACGCCCCCGGTGTTTT
AGCTATGGAGTCAAACACTGAGCGGGAGGAACTCGTCAATGTCTACGCAG
ATCTGGATGGAAAATGCAAGCGCGGGACGGTCAAGCGGTACGAAAGCCCA
AATAAGGTTTTCCTGGGTACAGGCAAGGTGTTAATGCAGCGGTATCAGCT
GTTCAACAACGCGGAGAAGCCCGCCTCTGGAGTGGCCGTGGAAATGCAGT
CCAACGTCAGCGGAGTGCCCACGCTGGGGGATCTAAGCAGCGAAGACGGC
CTGTTGCAAAACCTGCCTTCTATTGTTTGCGTCCGTGTCCTGGATCCGCA
GCCCGGCGAGCGCATACTGGACATGTGTGCCGCTCCGGGTAACAAAACAA
GCCACATAGCCGAGTTGATGGGCGATCGGGGATCTGTGGTGGCCCTAGAC
AATTCGGCCAGTCGCGTCCGCAGCATGCTGCCCAAATTGGGACACTACAA
AAGCATAACGGCGCATGTTTTTAACTCCACCGAGGCAGTGGCAGCGGACG
CTCCATCTGCACCCGTGGGAGAATTCACTGGGCCTCCGTTTCCATGTGAA
AGCTTTGACCGAATCTTGCTCGATGCACCCTGCAGTGGGCTGGGCAACCG
GCCACAGTTGTCCTGCAGCATTAAACAGGTTAAGGTCTTGTCCTCATATC
CCCATATTCAGCGCCGGCTATTTGAACAGGCAGTGCAGCTCGTTCGTCCT
GGCGGCATCCTTGTATATAGCACGTGCACCGTCACCGAGGATGAGTGCGA
ATGTCTT
BO04776.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11109-PB | 1320 | CG11109-RB | 244..1134 | 17..907 | 4455 | 100 | Plus |
CG11109-PA | 1077 | CG11109-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11109-RA | 1445 | CG11109-RA | 351..1245 | 13..907 | 4460 | 99.9 | Plus |
CG11109-RB | 1415 | CG11109-RB | 321..1215 | 13..907 | 4460 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22872608..22873502 | 13..907 | 4460 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:28:34 has no hits.
BO04776.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:58 Download gff for
BO04776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-PB | 240..1134 | 13..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:20 Download gff for
BO04776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:36 Download gff for
BO04776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RB | 321..1215 | 13..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:34:18 Download gff for
BO04776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RB | 321..1215 | 13..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:34:18 Download gff for
BO04776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22872608..22873502 | 13..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:36 Download gff for
BO04776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22865708..22866602 | 13..907 | 99 | | Plus |
BO04776.complete Sequence
1108 bp (1108 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629862
> BO04776.complete
GAAGTTATCAGTCGACATGTTGTGCATTGATCCGCTGGACTCACAGCTCA
CCAAAGCTGTGGCCGACTCCGAGCTCAAGGAGGTAGTGGTTGACACTAAC
TGCGGAGCTGCACTACTGCGAGGCGCCCACATATACGCCCCCGGTGTTTT
AGCTATGGAGTCAAACACTGAGCGGGAGGAACTCGTCAATGTCTACGCAG
ATCTGGATGGAAAATGCAAGCGCGGGACGGTCAAGCGGTACGAAAGCCCA
AATAAGGTTTTCCTGGGTACAGGCAAGGTGTTAATGCAGCGGTATCAGCT
GTTCAACAACGCGGAGAAGCCCGCCTCTGGAGTGGCCGTGGAAATGCAGT
CCAACGTCAGCGGAGTGCCCACGCTGGGGGATCTAAGCAGCGAAGACGGC
CTGTTGCAAAACCTGCCTTCTATTGTTTGCGTCCGTGTCCTGGATCCGCA
GCCCGGCGAGCGCATACTGGACATGTGTGCCGCTCCGGGTAACAAAACAA
GCCACATAGCCGAGTTGATGGGCGATCGGGGATCTGTGGTGGCCCTAGAC
AATTCGGCCAGTCGCGTCCGCAGCATGCTGCCCAAATTGGGACACTACAA
AAGCATAACGGCGCATGTTTTTAACTCCACCGAGGCAGTGGCAGCGGACG
CTCCATCTGCACCCGTGGGAGAATTCACTGGGCCTCCGTTTCCATGTGAA
AGCTTTGACCGAATCTTGCTCGATGCACCCTGCAGTGGGCTGGGCAACCG
GCCACAGTTGTCCTGCAGCATTAAACAGGTTAAGGTCTTGTCCTCATATC
CCCATATTCAGCGCCGGCTATTTGAACAGGCAGTGCAGCTCGTTCGTCCT
GGCGGCATCCTTGTATATAGCACGTGCACCGTCACCGAGGATGAGTGCGA
ATGTCTTGTGGCCTGGGCACTAAGAAAATTTGTCGAGCTGCGGCTAACAG
ATGCCACTCCCCGGTGGGGCGGTCCCGGACTTCCGCTTCCCGGTTTCGAG
GCATGTAAATCTCGTCTGTTGCAGCGCTTCGGTCCAAGCGGAGCAAATGC
GGACACTGTGGGCTTTTTTATTGCGAAGTTTCAGAAAATAGCAAGCTTTC
TAGACCAT
BO04776.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11109-RB | 1320 | CG11109-PB | 240..1317 | 13..1090 | 5375 | 99.9 | Plus |
CG11109-RA | 1077 | CG11109-PA | 1..1074 | 17..1090 | 5370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11109-RA | 1445 | CG11109-RA | 351..1428 | 13..1090 | 5375 | 99.9 | Plus |
CG11109-RB | 1415 | CG11109-RB | 321..1398 | 13..1090 | 5375 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22872608..22873685 | 13..1090 | 5375 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:47:12 has no hits.
BO04776.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:26 Download gff for
BO04776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RB | 240..1320 | 13..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:12 Download gff for
BO04776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RA | 351..1431 | 13..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:51 Download gff for
BO04776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RB | 330..1398 | 22..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:26 Download gff for
BO04776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RA | 351..1431 | 13..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:08 Download gff for
BO04776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11109-RB | 330..1398 | 22..1092 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:08 Download gff for
BO04776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22872617..22873685 | 22..1092 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:51 Download gff for
BO04776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22865717..22866785 | 22..1092 | 99 | | Plus |
BO04776.pep Sequence
Translation from 16 to 1108
> BO04776.pep
MLCIDPLDSQLTKAVADSELKEVVVDTNCGAALLRGAHIYAPGVLAMESN
TEREELVNVYADLDGKCKRGTVKRYESPNKVFLGTGKVLMQRYQLFNNAE
KPASGVAVEMQSNVSGVPTLGDLSSEDGLLQNLPSIVCVRVLDPQPGERI
LDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPKLGHYKSITAH
VFNSTEAVAADAPSAPVGEFTGPPFPCESFDRILLDAPCSGLGNRPQLSC
SIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLVAW
ALRKFVELRLTDATPRWGGPGLPLPGFEACKSRLLQRFGPSGANADTVGF
FIAKFQKIASFLDH
BO04776.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11109-PA | 358 | CG11109-PA | 1..358 | 1..358 | 1859 | 100 | Plus |
CG11109-PB | 439 | CG11109-PB | 82..439 | 1..358 | 1859 | 100 | Plus |
CG8545-PA | 891 | CG8545-PA | 418..640 | 129..360 | 247 | 31.3 | Plus |