Clone BO04776 Report

Search the DGRC for BO04776

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:47
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG11109-RA
Protein status:BO04776.pep: validated not full length
Sequenced Size:1108

Clone Sequence Records

BO04776.3prime Sequence

958 bp (844 high quality bases) assembled on 2005-12-01

> BO04776.3prime
ATGGTCTAGAAAGCTTGCTATTTTCTGAAACTTCGCAATAAAAAAGCCCA
CAGTGTCCGCATTTGCTCCGCTTGGACCGAAGCGCTGCAACAGACGAGAT
TTACATGCCTCGAAACCGGGAAGCGGAAGTCCGGGACCGCCCCACCGGGG
AGTGGCATCTGTTAGCCGCAGCTCGACAAATTTTCTTAGTGCCCAGGCCA
CAAGACATTCGCACTCATCCTCGGTGACGGTGCACGTGCTATATACAAGG
ATGCCGCCAGGACGAACGAGCTGCACTGCCTGTTCAAATAGCCGGCGCTG
AATATGGGGATATGAGGACAAGACCTTAACCTGTTTAATGCTGCAGGACA
ACTGTGGCCGGTTGCCCAGCCCACTGCAGGGTGCATCGAGCAAGATTCGG
TCAAAGCTTTCACATGGAAACGGAGGCCCAGTGAATTCTCCCACGGGTGC
AGATGGAGCGTCCGCTGCCACTGCCTCGGTGGAGTTAAAAACATGCGCCG
TTATGCTTTTGTAGTGTCCCAATTTGGGCAGCATGCTGCGGACGCGACTG
GCCGAATTGTCTAGGGCCACCACAGATCCCCGATCGCCCATCAACTCGGC
TATGTGGCTTGTTTTGTTACCCGGAGCGGCACACATGTCCAGTATGCGCT
CGCCGGGCTGCGGATCCAGGACACGGACGCAAACAATAGAAGGCAGGTTT
TGCAACAGGCCGTCTTCGCTGCTTAGATCCCCCAGCGTGGGCACTCCGCT
GACGTTGGACTGCATTTCCACGGCCACTCCAGAGGCGGGCTTCTCCGCGT
TGTTGAACAGCTGATACCGCTGCATTAACACCTTGCCTGTACCCAGGAAA
ACCTTATTTGGGCTTTCGTACCGCTTGACCGTCCCGCGCTTGCATTTTCC
ATCCAGATCTGCGTAGACATTGACGAGTTCCTCCCGCTCAGTGTTTGACT
CCATAGCT

BO04776.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-PB 1320 CG11109-RB 378..1317 958..19 4700 100 Minus
CG11109-PA 1077 CG11109-RA 135..1074 958..19 4700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-RA 1445 CG11109-RA 489..1428 958..19 4700 100 Minus
CG11109-RB 1415 CG11109-RB 459..1398 958..19 4700 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22872746..22873685 958..19 4700 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:39:50 has no hits.

BO04776.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:57 Download gff for BO04776.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-PB 378..1320 15..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:19 Download gff for BO04776.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-PA 135..1077 15..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:29 Download gff for BO04776.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 459..1401 15..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:13 Download gff for BO04776.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 459..1401 15..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:13 Download gff for BO04776.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22872746..22873688 15..958 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:29 Download gff for BO04776.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22865846..22866788 15..958 99   Minus

BO04776.5prime Sequence

907 bp (847 high quality bases) assembled on 2005-11-29

> BO04776.5prime
GAAGTTATCAGTCGACATGTTGTGCATTGATCCGCTGGACTCACAGCTCA
CCAAAGCTGTGGCCGACTCCGAGCTCAAGGAGGTAGTGGTTGACACTAAC
TGCGGAGCTGCACTACTGCGAGGCGCCCACATATACGCCCCCGGTGTTTT
AGCTATGGAGTCAAACACTGAGCGGGAGGAACTCGTCAATGTCTACGCAG
ATCTGGATGGAAAATGCAAGCGCGGGACGGTCAAGCGGTACGAAAGCCCA
AATAAGGTTTTCCTGGGTACAGGCAAGGTGTTAATGCAGCGGTATCAGCT
GTTCAACAACGCGGAGAAGCCCGCCTCTGGAGTGGCCGTGGAAATGCAGT
CCAACGTCAGCGGAGTGCCCACGCTGGGGGATCTAAGCAGCGAAGACGGC
CTGTTGCAAAACCTGCCTTCTATTGTTTGCGTCCGTGTCCTGGATCCGCA
GCCCGGCGAGCGCATACTGGACATGTGTGCCGCTCCGGGTAACAAAACAA
GCCACATAGCCGAGTTGATGGGCGATCGGGGATCTGTGGTGGCCCTAGAC
AATTCGGCCAGTCGCGTCCGCAGCATGCTGCCCAAATTGGGACACTACAA
AAGCATAACGGCGCATGTTTTTAACTCCACCGAGGCAGTGGCAGCGGACG
CTCCATCTGCACCCGTGGGAGAATTCACTGGGCCTCCGTTTCCATGTGAA
AGCTTTGACCGAATCTTGCTCGATGCACCCTGCAGTGGGCTGGGCAACCG
GCCACAGTTGTCCTGCAGCATTAAACAGGTTAAGGTCTTGTCCTCATATC
CCCATATTCAGCGCCGGCTATTTGAACAGGCAGTGCAGCTCGTTCGTCCT
GGCGGCATCCTTGTATATAGCACGTGCACCGTCACCGAGGATGAGTGCGA
ATGTCTT

BO04776.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-PB 1320 CG11109-RB 244..1134 17..907 4455 100 Plus
CG11109-PA 1077 CG11109-RA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-RA 1445 CG11109-RA 351..1245 13..907 4460 99.9 Plus
CG11109-RB 1415 CG11109-RB 321..1215 13..907 4460 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22872608..22873502 13..907 4460 99.9 Plus
Blast to na_te.dros performed on 2015-02-04 19:28:34 has no hits.

BO04776.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:09:58 Download gff for BO04776.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-PB 240..1134 13..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:20 Download gff for BO04776.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:36 Download gff for BO04776.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 321..1215 13..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:34:18 Download gff for BO04776.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 321..1215 13..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:34:18 Download gff for BO04776.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22872608..22873502 13..907 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:36 Download gff for BO04776.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22865708..22866602 13..907 99   Plus

BO04776.complete Sequence

1108 bp (1108 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629862

> BO04776.complete
GAAGTTATCAGTCGACATGTTGTGCATTGATCCGCTGGACTCACAGCTCA
CCAAAGCTGTGGCCGACTCCGAGCTCAAGGAGGTAGTGGTTGACACTAAC
TGCGGAGCTGCACTACTGCGAGGCGCCCACATATACGCCCCCGGTGTTTT
AGCTATGGAGTCAAACACTGAGCGGGAGGAACTCGTCAATGTCTACGCAG
ATCTGGATGGAAAATGCAAGCGCGGGACGGTCAAGCGGTACGAAAGCCCA
AATAAGGTTTTCCTGGGTACAGGCAAGGTGTTAATGCAGCGGTATCAGCT
GTTCAACAACGCGGAGAAGCCCGCCTCTGGAGTGGCCGTGGAAATGCAGT
CCAACGTCAGCGGAGTGCCCACGCTGGGGGATCTAAGCAGCGAAGACGGC
CTGTTGCAAAACCTGCCTTCTATTGTTTGCGTCCGTGTCCTGGATCCGCA
GCCCGGCGAGCGCATACTGGACATGTGTGCCGCTCCGGGTAACAAAACAA
GCCACATAGCCGAGTTGATGGGCGATCGGGGATCTGTGGTGGCCCTAGAC
AATTCGGCCAGTCGCGTCCGCAGCATGCTGCCCAAATTGGGACACTACAA
AAGCATAACGGCGCATGTTTTTAACTCCACCGAGGCAGTGGCAGCGGACG
CTCCATCTGCACCCGTGGGAGAATTCACTGGGCCTCCGTTTCCATGTGAA
AGCTTTGACCGAATCTTGCTCGATGCACCCTGCAGTGGGCTGGGCAACCG
GCCACAGTTGTCCTGCAGCATTAAACAGGTTAAGGTCTTGTCCTCATATC
CCCATATTCAGCGCCGGCTATTTGAACAGGCAGTGCAGCTCGTTCGTCCT
GGCGGCATCCTTGTATATAGCACGTGCACCGTCACCGAGGATGAGTGCGA
ATGTCTTGTGGCCTGGGCACTAAGAAAATTTGTCGAGCTGCGGCTAACAG
ATGCCACTCCCCGGTGGGGCGGTCCCGGACTTCCGCTTCCCGGTTTCGAG
GCATGTAAATCTCGTCTGTTGCAGCGCTTCGGTCCAAGCGGAGCAAATGC
GGACACTGTGGGCTTTTTTATTGCGAAGTTTCAGAAAATAGCAAGCTTTC
TAGACCAT

BO04776.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-RB 1320 CG11109-PB 240..1317 13..1090 5375 99.9 Plus
CG11109-RA 1077 CG11109-PA 1..1074 17..1090 5370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-RA 1445 CG11109-RA 351..1428 13..1090 5375 99.9 Plus
CG11109-RB 1415 CG11109-RB 321..1398 13..1090 5375 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22872608..22873685 13..1090 5375 99.9 Plus
Blast to na_te.dros performed on 2014-11-27 23:47:12 has no hits.

BO04776.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:26 Download gff for BO04776.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 240..1320 13..1094 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:12 Download gff for BO04776.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RA 351..1431 13..1094 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:51 Download gff for BO04776.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 330..1398 22..1092 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:26 Download gff for BO04776.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RA 351..1431 13..1094 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:08 Download gff for BO04776.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 330..1398 22..1092 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:08 Download gff for BO04776.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22872617..22873685 22..1092 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:51 Download gff for BO04776.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22865717..22866785 22..1092 99   Plus

BO04776.pep Sequence

Translation from 16 to 1108

> BO04776.pep
MLCIDPLDSQLTKAVADSELKEVVVDTNCGAALLRGAHIYAPGVLAMESN
TEREELVNVYADLDGKCKRGTVKRYESPNKVFLGTGKVLMQRYQLFNNAE
KPASGVAVEMQSNVSGVPTLGDLSSEDGLLQNLPSIVCVRVLDPQPGERI
LDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPKLGHYKSITAH
VFNSTEAVAADAPSAPVGEFTGPPFPCESFDRILLDAPCSGLGNRPQLSC
SIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLVAW
ALRKFVELRLTDATPRWGGPGLPLPGFEACKSRLLQRFGPSGANADTVGF
FIAKFQKIASFLDH

BO04776.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-PA 358 CG11109-PA 1..358 1..358 1859 100 Plus
CG11109-PB 439 CG11109-PB 82..439 1..358 1859 100 Plus
CG8545-PA 891 CG8545-PA 418..640 129..360 247 31.3 Plus