Clone Sequence Records
BO04784.5prime Sequence
509 bp (508 high quality bases) assembled on 2005-11-29
> BO04784.5prime
GAAGTTATCAGTCGACATGTCCGGCATTGCTATTACACGATTGGGGGAGG
AGCGCAAGGCCTGGCGCAAGGATCACCCATTCGGGTTCGTCGCACGACCC
GCCAAGAACCCTGACGGCACCCTCAACCTGATGATCTGGGAGTGCGCCAT
TCCCGGCAAGAAGTCCACCCCCTGGGAGGGCGGGCTCTACAAGCTGCGCA
TGATCTTCAAGGACGACTACCCCACCTCGCCGCCCAAGTGCAAGTTCGAA
CCGCCGCTGTTCCACCCGAACGTCTATCCCTCGGGCACCGTTTGCCTGTC
GCTGCTGGACGAGGAGAAGGACTGGCGCCCCGCCATCACCATCAAGCAAA
TCCTGCTGGGCATCCAGGACCTGCTCAACGAGCCGAACATCAAGGACCCG
GCCCAGGCGGAGGCCTACACCATCTACTGCCAGAACCGACTGGAGTACGA
GAAGCGCGTGCGTGCCCAGGCCCGCGCCATGGCGGCCACCGAGGCAAGCT
TTCTAGACC
BO04784.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3018-PA | 480 | lwr-RA | 1..473 | 17..489 | 2315 | 99.5 | Plus |
CG3018-PB | 480 | lwr-RB | 1..473 | 17..489 | 2315 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lwr-RD | 1105 | CG3018-RD | 250..727 | 16..493 | 2345 | 99.4 | Plus |
lwr-RC | 1363 | CG3018-RC | 254..731 | 16..493 | 2345 | 99.4 | Plus |
lwr-RB | 1294 | CG3018-RB | 283..760 | 16..493 | 2345 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 541771..542248 | 493..16 | 2345 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:47:52 has no hits.
BO04784.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:10 Download gff for
BO04784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lwr-PA | 1..480 | 17..494 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:38 Download gff for
BO04784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3018-PB | 1..480 | 17..494 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:39 Download gff for
BO04784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lwr-RB | 279..760 | 13..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:54 Download gff for
BO04784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lwr-RB | 279..760 | 13..493 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:54 Download gff for
BO04784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 541771..542252 | 13..493 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:39 Download gff for
BO04784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 541771..542252 | 13..493 | 99 | | Minus |
BO04784.3prime Sequence
509 bp (508 high quality bases) assembled on 2005-12-01
> BO04784.3prime
ATGGTCTAGAAAGCTTGCCTCGGTGGCCGCCATGGCGCGGGCCTGGGCAC
GCACGCGCTTCTCGTACTCCAGTCGGTTCTGGCAGTAGATGGTGTAGGCC
TCCGCCTGGGCCGGGTCCTTGATGTTCGGCTCGTTGAGCAGGTCCTGGAT
GCCCAGCAGGATTTGCTTGATGGTGATGGCGGGGCGCCAGTCCTTCTCCT
CGTCCAGCAGCGACAGGCAAACGGTGCCCGAGGGATAGACGTTCGGGTGG
AACAGCGGCGGTTCGAACTTGCACTTGGGCGGCGAGGTGGGGTAGTCGTC
CTTGAAGATCATGCGCAGCTTGTAGAGCCCGCCCTCCCAGGGGGTGGACT
TCTTGCCGGGAATGGCGCACTCCCAGATCATCAGGTTGAGGGTGCCGTCA
GGGTTCTTGGCGGGTCGTGCGACGAACCCGAATGGGTGATCCTTGCGCCA
GGCCTTGCGCTCCTCCCCCAATCGTGTAATAGCAATGCCGGACATGTCGA
CTGATAACT
BO04784.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3018-PA | 480 | lwr-RA | 1..473 | 495..23 | 2315 | 99.5 | Minus |
CG3018-PB | 480 | lwr-RB | 1..473 | 495..23 | 2315 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lwr-RD | 1105 | CG3018-RD | 250..727 | 496..19 | 2345 | 99.4 | Minus |
lwr-RC | 1363 | CG3018-RC | 254..731 | 496..19 | 2345 | 99.4 | Minus |
lwr-RB | 1294 | CG3018-RB | 283..760 | 496..19 | 2345 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 541771..542248 | 19..496 | 2345 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:39:35 has no hits.
BO04784.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:09 Download gff for
BO04784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lwr-PA | 1..480 | 18..495 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:36 Download gff for
BO04784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3018-PB | 1..480 | 18..495 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:04 Download gff for
BO04784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lwr-RB | 279..760 | 19..499 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:33 Download gff for
BO04784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lwr-RB | 279..760 | 19..499 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:33 Download gff for
BO04784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 541771..542252 | 19..499 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:04 Download gff for
BO04784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 541771..542252 | 19..499 | 99 | | Plus |
BO04784.complete Sequence
511 bp (511 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629863
> BO04784.complete
GAAGTTATCAGTCGACATGTCCGGCATTGCTATTACACGATTGGGGGAGG
AGCGCAAGGCCTGGCGCAAGGATCACCCATTCGGGTTCGTCGCACGACCC
GCCAAGAACCCTGACGGCACCCTCAACCTGATGATCTGGGAGTGCGCCAT
TCCCGGCAAGAAGTCCACCCCCTGGGAGGGCGGGCTCTACAAGCTGCGCA
TGATCTTCAAGGACGACTACCCCACCTCGCCGCCCAAGTGCAAGTTCGAA
CCGCCGCTGTTCCACCCGAACGTCTATCCCTCGGGCACCGTTTGCCTGTC
GCTGCTGGACGAGGAGAAGGACTGGCGCCCCGCCATCACCATCAAGCAAA
TCCTGCTGGGCATCCAGGACCTGCTCAACGAGCCGAACATCAAGGACCCG
GCCCAGGCGGAGGCCTACACCATCTACTGCCAGAACCGACTGGAGTACGA
GAAGCGCGTGCGTGCCCAGGCCCGCGCCATGGCGGCCACCGAGGCAAGCT
TTCTAGACCAT
BO04784.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lwr-RD | 480 | CG3018-PD | 1..477 | 17..493 | 2340 | 99.4 | Plus |
lwr-RC | 480 | CG3018-PC | 1..477 | 17..493 | 2340 | 99.4 | Plus |
lwr-RB | 480 | CG3018-PB | 1..477 | 17..493 | 2340 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lwr-RD | 1105 | CG3018-RD | 250..727 | 16..493 | 2345 | 99.4 | Plus |
lwr-RC | 1363 | CG3018-RC | 254..731 | 16..493 | 2345 | 99.4 | Plus |
lwr-RB | 1294 | CG3018-RB | 283..760 | 16..493 | 2345 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 541771..542248 | 493..16 | 2345 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:47:16 has no hits.
BO04784.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:59 Download gff for
BO04784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lwr-RB | 1..480 | 17..494 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:23 Download gff for
BO04784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lwr-RB | 271..752 | 13..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:46 Download gff for
BO04784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lwr-RB | 284..760 | 17..495 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:00 Download gff for
BO04784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lwr-RB | 271..752 | 13..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:37 Download gff for
BO04784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lwr-RB | 284..760 | 17..495 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:37 Download gff for
BO04784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 541769..542247 | 17..495 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:46 Download gff for
BO04784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 541769..542247 | 17..495 | 98 | | Minus |
BO04784.pep Sequence
Translation from 16 to 511
> BO04784.pep
MSGIAITRLGEERKAWRKDHPFGFVARPAKNPDGTLNLMIWECAIPGKKS
TPWEGGLYKLRMIFKDDYPTSPPKCKFEPPLFHPNVYPSGTVCLSLLDEE
KDWRPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIYCQNRLEYEKRVRA
QARAMAATEASFLDH
BO04784.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lwr-PD | 159 | CG3018-PD | 1..159 | 1..159 | 863 | 100 | Plus |
lwr-PC | 159 | CG3018-PC | 1..159 | 1..159 | 863 | 100 | Plus |
lwr-PB | 159 | CG3018-PB | 1..159 | 1..159 | 863 | 100 | Plus |
lwr-PA | 159 | CG3018-PA | 1..159 | 1..159 | 863 | 100 | Plus |
Ubc6-PC | 151 | CG2013-PC | 1..151 | 1..164 | 298 | 40.2 | Plus |