Clone BO04784 Report

Search the DGRC for BO04784

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:47
Well:84
Vector:pDNR-Dual
Associated Gene/Transcriptlwr-RA
Protein status:BO04784.pep: validated full length
Sequenced Size:511

Clone Sequence Records

BO04784.5prime Sequence

509 bp (508 high quality bases) assembled on 2005-11-29

> BO04784.5prime
GAAGTTATCAGTCGACATGTCCGGCATTGCTATTACACGATTGGGGGAGG
AGCGCAAGGCCTGGCGCAAGGATCACCCATTCGGGTTCGTCGCACGACCC
GCCAAGAACCCTGACGGCACCCTCAACCTGATGATCTGGGAGTGCGCCAT
TCCCGGCAAGAAGTCCACCCCCTGGGAGGGCGGGCTCTACAAGCTGCGCA
TGATCTTCAAGGACGACTACCCCACCTCGCCGCCCAAGTGCAAGTTCGAA
CCGCCGCTGTTCCACCCGAACGTCTATCCCTCGGGCACCGTTTGCCTGTC
GCTGCTGGACGAGGAGAAGGACTGGCGCCCCGCCATCACCATCAAGCAAA
TCCTGCTGGGCATCCAGGACCTGCTCAACGAGCCGAACATCAAGGACCCG
GCCCAGGCGGAGGCCTACACCATCTACTGCCAGAACCGACTGGAGTACGA
GAAGCGCGTGCGTGCCCAGGCCCGCGCCATGGCGGCCACCGAGGCAAGCT
TTCTAGACC

BO04784.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3018-PA 480 lwr-RA 1..473 17..489 2315 99.5 Plus
CG3018-PB 480 lwr-RB 1..473 17..489 2315 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
lwr-RD 1105 CG3018-RD 250..727 16..493 2345 99.4 Plus
lwr-RC 1363 CG3018-RC 254..731 16..493 2345 99.4 Plus
lwr-RB 1294 CG3018-RB 283..760 16..493 2345 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 541771..542248 493..16 2345 99.4 Minus
Blast to na_te.dros performed on 2015-02-11 04:47:52 has no hits.

BO04784.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:10 Download gff for BO04784.5prime
Subject Subject Range Query Range Percent Splice Strand
lwr-PA 1..480 17..494 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:38 Download gff for BO04784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3018-PB 1..480 17..494 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:39 Download gff for BO04784.5prime
Subject Subject Range Query Range Percent Splice Strand
lwr-RB 279..760 13..493 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:54 Download gff for BO04784.5prime
Subject Subject Range Query Range Percent Splice Strand
lwr-RB 279..760 13..493 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:54 Download gff for BO04784.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 541771..542252 13..493 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:39 Download gff for BO04784.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 541771..542252 13..493 99   Minus

BO04784.3prime Sequence

509 bp (508 high quality bases) assembled on 2005-12-01

> BO04784.3prime
ATGGTCTAGAAAGCTTGCCTCGGTGGCCGCCATGGCGCGGGCCTGGGCAC
GCACGCGCTTCTCGTACTCCAGTCGGTTCTGGCAGTAGATGGTGTAGGCC
TCCGCCTGGGCCGGGTCCTTGATGTTCGGCTCGTTGAGCAGGTCCTGGAT
GCCCAGCAGGATTTGCTTGATGGTGATGGCGGGGCGCCAGTCCTTCTCCT
CGTCCAGCAGCGACAGGCAAACGGTGCCCGAGGGATAGACGTTCGGGTGG
AACAGCGGCGGTTCGAACTTGCACTTGGGCGGCGAGGTGGGGTAGTCGTC
CTTGAAGATCATGCGCAGCTTGTAGAGCCCGCCCTCCCAGGGGGTGGACT
TCTTGCCGGGAATGGCGCACTCCCAGATCATCAGGTTGAGGGTGCCGTCA
GGGTTCTTGGCGGGTCGTGCGACGAACCCGAATGGGTGATCCTTGCGCCA
GGCCTTGCGCTCCTCCCCCAATCGTGTAATAGCAATGCCGGACATGTCGA
CTGATAACT

BO04784.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3018-PA 480 lwr-RA 1..473 495..23 2315 99.5 Minus
CG3018-PB 480 lwr-RB 1..473 495..23 2315 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
lwr-RD 1105 CG3018-RD 250..727 496..19 2345 99.4 Minus
lwr-RC 1363 CG3018-RC 254..731 496..19 2345 99.4 Minus
lwr-RB 1294 CG3018-RB 283..760 496..19 2345 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 541771..542248 19..496 2345 99.4 Plus
Blast to na_te.dros performed on 2015-02-13 05:39:35 has no hits.

BO04784.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:09 Download gff for BO04784.3prime
Subject Subject Range Query Range Percent Splice Strand
lwr-PA 1..480 18..495 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:36 Download gff for BO04784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3018-PB 1..480 18..495 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:04 Download gff for BO04784.3prime
Subject Subject Range Query Range Percent Splice Strand
lwr-RB 279..760 19..499 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:33 Download gff for BO04784.3prime
Subject Subject Range Query Range Percent Splice Strand
lwr-RB 279..760 19..499 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:33 Download gff for BO04784.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 541771..542252 19..499 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:04 Download gff for BO04784.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 541771..542252 19..499 99   Plus

BO04784.complete Sequence

511 bp (511 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629863

> BO04784.complete
GAAGTTATCAGTCGACATGTCCGGCATTGCTATTACACGATTGGGGGAGG
AGCGCAAGGCCTGGCGCAAGGATCACCCATTCGGGTTCGTCGCACGACCC
GCCAAGAACCCTGACGGCACCCTCAACCTGATGATCTGGGAGTGCGCCAT
TCCCGGCAAGAAGTCCACCCCCTGGGAGGGCGGGCTCTACAAGCTGCGCA
TGATCTTCAAGGACGACTACCCCACCTCGCCGCCCAAGTGCAAGTTCGAA
CCGCCGCTGTTCCACCCGAACGTCTATCCCTCGGGCACCGTTTGCCTGTC
GCTGCTGGACGAGGAGAAGGACTGGCGCCCCGCCATCACCATCAAGCAAA
TCCTGCTGGGCATCCAGGACCTGCTCAACGAGCCGAACATCAAGGACCCG
GCCCAGGCGGAGGCCTACACCATCTACTGCCAGAACCGACTGGAGTACGA
GAAGCGCGTGCGTGCCCAGGCCCGCGCCATGGCGGCCACCGAGGCAAGCT
TTCTAGACCAT

BO04784.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
lwr-RD 480 CG3018-PD 1..477 17..493 2340 99.4 Plus
lwr-RC 480 CG3018-PC 1..477 17..493 2340 99.4 Plus
lwr-RB 480 CG3018-PB 1..477 17..493 2340 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
lwr-RD 1105 CG3018-RD 250..727 16..493 2345 99.4 Plus
lwr-RC 1363 CG3018-RC 254..731 16..493 2345 99.4 Plus
lwr-RB 1294 CG3018-RB 283..760 16..493 2345 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 541771..542248 493..16 2345 99.4 Minus
Blast to na_te.dros performed on 2014-11-27 14:47:16 has no hits.

BO04784.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:59 Download gff for BO04784.complete
Subject Subject Range Query Range Percent Splice Strand
lwr-RB 1..480 17..494 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:23 Download gff for BO04784.complete
Subject Subject Range Query Range Percent Splice Strand
lwr-RB 271..752 13..493 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:46 Download gff for BO04784.complete
Subject Subject Range Query Range Percent Splice Strand
lwr-RB 284..760 17..495 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:00 Download gff for BO04784.complete
Subject Subject Range Query Range Percent Splice Strand
lwr-RB 271..752 13..493 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:37 Download gff for BO04784.complete
Subject Subject Range Query Range Percent Splice Strand
lwr-RB 284..760 17..495 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:37 Download gff for BO04784.complete
Subject Subject Range Query Range Percent Splice Strand
2L 541769..542247 17..495 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:46 Download gff for BO04784.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 541769..542247 17..495 98   Minus

BO04784.pep Sequence

Translation from 16 to 511

> BO04784.pep
MSGIAITRLGEERKAWRKDHPFGFVARPAKNPDGTLNLMIWECAIPGKKS
TPWEGGLYKLRMIFKDDYPTSPPKCKFEPPLFHPNVYPSGTVCLSLLDEE
KDWRPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIYCQNRLEYEKRVRA
QARAMAATEASFLDH

BO04784.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
lwr-PD 159 CG3018-PD 1..159 1..159 863 100 Plus
lwr-PC 159 CG3018-PC 1..159 1..159 863 100 Plus
lwr-PB 159 CG3018-PB 1..159 1..159 863 100 Plus
lwr-PA 159 CG3018-PA 1..159 1..159 863 100 Plus
Ubc6-PC 151 CG2013-PC 1..151 1..164 298 40.2 Plus