Clone Sequence Records
BO04801.3prime Sequence
863 bp (800 high quality bases) assembled on 2005-12-02
> BO04801.3prime
ATGGTCTAGAAAGCTTGCCTTGTGGTAACCATGGTGGTCGGAGTAGACGG
TGGCATCGTGGCCAATGGCGCTAACAGGGTAGCTGCTGACGGCAACGGTG
GGTGCGTGCTTGACCACGGAGTGGGACACCACGGGCACCTTCACGTAGAC
GGGGTAGGGACGATCCACATGCACGGGCACCTGGACATTGACGGCCTTCT
CCACGTAGACAGGGTAGGGCTTGGCCACTGGCACGGGGTAGGGCCTGGGC
ACCTCAACGGGCACTGGGCGATCGACGGGCACATGGACGGGCACCTTCTC
GTGACGGATCACTTCGTAGGGCTGGGGCACTGGCACGGGCACCTTGACGT
ACTCCTTAACGGTCACGGGCACCTTGCGGATGACTTCGTAGGGCTGGGGC
ACGGGCACCTTAACTTCGACGGGCACGCGCTTCTCATGGACGACGGGATA
GGGGCGGTCCACATGCACGGGCACTGGGATTCCCTTGGTGATGGTGATGG
TCTTGTGCACATCGGCCTGCTTGCTGATCACATAGGGGGCGGGAGCGTGG
TGGACAGCGACGGCGGGAGCAGTGTGTCCAACGGCGATCGCGGGACCACT
GTGGCCCACGGCGACGGCAGCGGGTGCGGAGTATCCGGTCAGTCCGTAGC
CATGTCCGTAGCTTCCGTGGCCGGAGATGGAACCATGTCCCAGGTAGCCG
GTGTCCAGACCAGCATGACCGTAGCCGTAGCCCAGATCGAGCAGGCCGCG
CTTGTCCAGCTTCTTCTCCAGCGGCACCTTCTCACCCTCGGTTTTGCTGG
CGCAGGCGGAGGCCACCAGCAGAGCGGCTAAGCAGATGAATACTTTCATG
TCGACTGATAACT
BO04801.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16884-PA | 834 | CG16884-RA | 1..831 | 849..19 | 4155 | 100 | Minus |
CG30101-PA | 987 | CG30101-RA | 409..440 | 414..383 | 160 | 100 | Minus |
CG30101-PA | 987 | CG30101-RA | 472..498 | 333..307 | 135 | 100 | Minus |
CG16885-PB | 471 | CG16885-RB | 334..360 | 414..388 | 135 | 100 | Minus |
CG16885-PA | 813 | CG16885-RA | 334..360 | 414..388 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16884-RA | 1413 | CG16884-RA | 107..937 | 849..19 | 4155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13945232..13946050 | 19..837 | 4095 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:10:17 has no hits.
BO04801.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:17 Download gff for
BO04801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-PA | 1..834 | 15..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:49 Download gff for
BO04801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-PA | 1..834 | 15..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:50 Download gff for
BO04801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 95..942 | 13..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:26 Download gff for
BO04801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 95..942 | 13..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:26 Download gff for
BO04801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13945227..13946050 | 13..837 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:50 Download gff for
BO04801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13945227..13946050 | 13..837 | 99 | <- | Plus |
BO04801.5prime Sequence
863 bp (862 high quality bases) assembled on 2005-11-29
> BO04801.5prime
GAAGTTATCAGTCGACATGAAAGTATTCATCTGCTTAGCCGCTCTGCTGG
TGGCCTCCGCCTGCGCCAGCAAAACCGAGGGTGAGAAGGTGCCGCTGGAG
AAGAAGCTGGACAAGCGCGGCCTGCTCGATCTGGGCTACGGCTACGGTCA
TGCTGGTCTGGACACCGGCTACCTGGGACATGGTTCCATCTCCGGCCACG
GAAGCTACGGACATGGCTACGGACTGACCGGATACTCCGCACCCGCTGCC
GTCGCCGTGGGCCACAGTGGTCCCGCGATCGCCGTTGGACACACTGCTCC
CGCCGTCGCTGTCCACCACGCTCCCGCCCCCTATGTGATCAGCAAGCAGG
CCGATGTGCACAAGACCATCACCATCACCAAGGGAATCCCAGTGCCCGTG
CATGTGGACCGCCCCTATCCCGTCGTCCATGAGAAGCGCGTGCCCGTCGA
AGTTAAGGTGCCCGTGCCCCAGCCCTACGAAGTCATCCGCAAGGTGCCCG
TGACCGTTAAGGAGTACGTCAAGGTGCCCGTGCCAGTGCCCCAGCCCTAC
GAAGTGATCCGTCACGAGAAGGTGCCCGTCCATGTGCCCGTCGATCGCCC
AGTGCCCGTTGAGGTGCCCAGGCCCTACCCCGTGCCAGTGGCCAAGCCCT
ACCCTGTCTACGTGGAGAAGGCCGTCAATGTCCAGGTGCCCGTGCATGTG
GATCGTCCCTACCCCGTCTACGTGAAGGTGCCCGTGGTGTCCCACTCCGT
GGTCAAGCACGCACCCACCGTTGCCGTCAGCAGCTACCCTGTTAGCGCCA
TTGGCCACGATGCCACCGTCTACTCCGACCACCATGGTTACCACAAGGCA
AGCTTTCTAGACC
BO04801.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16884-PA | 834 | CG16884-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
CG30101-PA | 987 | CG30101-RA | 409..440 | 452..483 | 160 | 100 | Plus |
CG30101-PA | 987 | CG30101-RA | 472..498 | 533..559 | 135 | 100 | Plus |
CG16885-PB | 471 | CG16885-RB | 334..360 | 452..478 | 135 | 100 | Plus |
CG16885-PA | 813 | CG16885-RA | 334..360 | 452..478 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16884-RA | 1413 | CG16884-RA | 107..937 | 17..847 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:09:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13945232..13946050 | 847..29 | 4095 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 14:09:56 has no hits.
BO04801.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:18 Download gff for
BO04801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-PA | 1..834 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:50 Download gff for
BO04801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-PA | 1..834 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:42 Download gff for
BO04801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 95..942 | 5..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:42 Download gff for
BO04801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 95..942 | 5..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:42 Download gff for
BO04801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13945227..13946050 | 29..853 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:42 Download gff for
BO04801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13945227..13946050 | 29..853 | 99 | <- | Minus |
BO04801.complete Sequence
865 bp (865 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629864
> BO04801.complete
GAAGTTATCAGTCGACATGAAAGTATTCATCTGCTTAGCCGCTCTGCTGG
TGGCCTCCGCCTGCGCCAGCAAAACCGAGGGTGAGAAGGTGCCGCTGGAG
AAGAAGCTGGACAAGCGCGGCCTGCTCGATCTGGGCTACGGCTACGGTCA
TGCTGGTCTGGACACCGGCTACCTGGGACATGGTTCCATCTCCGGCCACG
GAAGCTACGGACATGGCTACGGACTGACCGGATACTCCGCACCCGCTGCC
GTCGCCGTGGGCCACAGTGGTCCCGCGATCGCCGTTGGACACACTGCTCC
CGCCGTCGCTGTCCACCACGCTCCCGCCCCCTATGTGATCAGCAAGCAGG
CCGATGTGCACAAGACCATCACCATCACCAAGGGAATCCCAGTGCCCGTG
CATGTGGACCGCCCCTATCCCGTCGTCCATGAGAAGCGCGTGCCCGTCGA
AGTTAAGGTGCCCGTGCCCCAGCCCTACGAAGTCATCCGCAAGGTGCCCG
TGACCGTTAAGGAGTACGTCAAGGTGCCCGTGCCAGTGCCCCAGCCCTAC
GAAGTGATCCGTCACGAGAAGGTGCCCGTCCATGTGCCCGTCGATCGCCC
AGTGCCCGTTGAGGTGCCCAGGCCCTACCCCGTGCCAGTGGCCAAGCCCT
ACCCTGTCTACGTGGAGAAGGCCGTCAATGTCCAGGTGCCCGTGCATGTG
GATCGTCCCTACCCCGTCTACGTGAAGGTGCCCGTGGTGTCCCACTCCGT
GGTCAAGCACGCACCCACCGTTGCCGTCAGCAGCTACCCTGTTAGCGCCA
TTGGCCACGATGCCACCGTCTACTCCGACCACCATGGTTACCACAAGGCA
AGCTTTCTAGACCAT
BO04801.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16884-RA | 834 | CG16884-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16884-RA | 1413 | CG16884-RA | 107..937 | 17..847 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13945232..13946050 | 847..29 | 4095 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:18:05 has no hits.
BO04801.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:00 Download gff for
BO04801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 1..834 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:09 Download gff for
BO04801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 93..940 | 5..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:33 Download gff for
BO04801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 107..937 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:00 Download gff for
BO04801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 93..940 | 5..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:18 Download gff for
BO04801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16884-RA | 107..937 | 17..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:18 Download gff for
BO04801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13945230..13946050 | 29..849 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:33 Download gff for
BO04801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13945230..13946050 | 29..849 | 99 | <- | Minus |
BO04801.pep Sequence
Translation from 16 to 865
> BO04801.pep
MKVFICLAALLVASACASKTEGEKVPLEKKLDKRGLLDLGYGYGHAGLDT
GYLGHGSISGHGSYGHGYGLTGYSAPAAVAVGHSGPAIAVGHTAPAVAVH
HAPAPYVISKQADVHKTITITKGIPVPVHVDRPYPVVHEKRVPVEVKVPV
PQPYEVIRKVPVTVKEYVKVPVPVPQPYEVIRHEKVPVHVPVDRPVPVEV
PRPYPVPVAKPYPVYVEKAVNVQVPVHVDRPYPVYVKVPVVSHSVVKHAP
TVAVSSYPVSAIGHDATVYSDHHGYHKASFLDH
BO04801.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16884-PA | 277 | CG16884-PA | 1..277 | 1..277 | 1478 | 100 | Plus |
CG16885-PA | 270 | CG16885-PA | 9..238 | 7..272 | 382 | 41.8 | Plus |
CG30101-PA | 328 | CG30101-PA | 1..272 | 1..258 | 343 | 36.9 | Plus |
CG16886-PB | 358 | CG16886-PB | 66..246 | 100..262 | 316 | 44.6 | Plus |
CG16886-PA | 373 | CG16886-PA | 66..246 | 100..262 | 316 | 44.6 | Plus |
CG16886-PB | 358 | CG16886-PB | 135..299 | 100..259 | 285 | 43.8 | Plus |
CG16886-PB | 358 | CG16886-PB | 151..354 | 88..283 | 262 | 36.2 | Plus |
CG30101-PA | 328 | CG30101-PA | 180..317 | 103..248 | 241 | 42.9 | Plus |
CG16886-PB | 358 | CG16886-PB | 73..194 | 134..264 | 196 | 44.2 | Plus |