Clone BO04801 Report

Search the DGRC for BO04801

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG16884-RA
Protein status:BO04801.pep: validated full length
Sequenced Size:865

Clone Sequence Records

BO04801.3prime Sequence

863 bp (800 high quality bases) assembled on 2005-12-02

> BO04801.3prime
ATGGTCTAGAAAGCTTGCCTTGTGGTAACCATGGTGGTCGGAGTAGACGG
TGGCATCGTGGCCAATGGCGCTAACAGGGTAGCTGCTGACGGCAACGGTG
GGTGCGTGCTTGACCACGGAGTGGGACACCACGGGCACCTTCACGTAGAC
GGGGTAGGGACGATCCACATGCACGGGCACCTGGACATTGACGGCCTTCT
CCACGTAGACAGGGTAGGGCTTGGCCACTGGCACGGGGTAGGGCCTGGGC
ACCTCAACGGGCACTGGGCGATCGACGGGCACATGGACGGGCACCTTCTC
GTGACGGATCACTTCGTAGGGCTGGGGCACTGGCACGGGCACCTTGACGT
ACTCCTTAACGGTCACGGGCACCTTGCGGATGACTTCGTAGGGCTGGGGC
ACGGGCACCTTAACTTCGACGGGCACGCGCTTCTCATGGACGACGGGATA
GGGGCGGTCCACATGCACGGGCACTGGGATTCCCTTGGTGATGGTGATGG
TCTTGTGCACATCGGCCTGCTTGCTGATCACATAGGGGGCGGGAGCGTGG
TGGACAGCGACGGCGGGAGCAGTGTGTCCAACGGCGATCGCGGGACCACT
GTGGCCCACGGCGACGGCAGCGGGTGCGGAGTATCCGGTCAGTCCGTAGC
CATGTCCGTAGCTTCCGTGGCCGGAGATGGAACCATGTCCCAGGTAGCCG
GTGTCCAGACCAGCATGACCGTAGCCGTAGCCCAGATCGAGCAGGCCGCG
CTTGTCCAGCTTCTTCTCCAGCGGCACCTTCTCACCCTCGGTTTTGCTGG
CGCAGGCGGAGGCCACCAGCAGAGCGGCTAAGCAGATGAATACTTTCATG
TCGACTGATAACT

BO04801.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-PA 834 CG16884-RA 1..831 849..19 4155 100 Minus
CG30101-PA 987 CG30101-RA 409..440 414..383 160 100 Minus
CG30101-PA 987 CG30101-RA 472..498 333..307 135 100 Minus
CG16885-PB 471 CG16885-RB 334..360 414..388 135 100 Minus
CG16885-PA 813 CG16885-RA 334..360 414..388 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-RA 1413 CG16884-RA 107..937 849..19 4155 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13945232..13946050 19..837 4095 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:10:17 has no hits.

BO04801.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:17 Download gff for BO04801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-PA 1..834 15..849 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:49 Download gff for BO04801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-PA 1..834 15..849 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:50 Download gff for BO04801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 95..942 13..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:26 Download gff for BO04801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 95..942 13..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:26 Download gff for BO04801.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13945227..13946050 13..837 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:50 Download gff for BO04801.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13945227..13946050 13..837 99 <- Plus

BO04801.5prime Sequence

863 bp (862 high quality bases) assembled on 2005-11-29

> BO04801.5prime
GAAGTTATCAGTCGACATGAAAGTATTCATCTGCTTAGCCGCTCTGCTGG
TGGCCTCCGCCTGCGCCAGCAAAACCGAGGGTGAGAAGGTGCCGCTGGAG
AAGAAGCTGGACAAGCGCGGCCTGCTCGATCTGGGCTACGGCTACGGTCA
TGCTGGTCTGGACACCGGCTACCTGGGACATGGTTCCATCTCCGGCCACG
GAAGCTACGGACATGGCTACGGACTGACCGGATACTCCGCACCCGCTGCC
GTCGCCGTGGGCCACAGTGGTCCCGCGATCGCCGTTGGACACACTGCTCC
CGCCGTCGCTGTCCACCACGCTCCCGCCCCCTATGTGATCAGCAAGCAGG
CCGATGTGCACAAGACCATCACCATCACCAAGGGAATCCCAGTGCCCGTG
CATGTGGACCGCCCCTATCCCGTCGTCCATGAGAAGCGCGTGCCCGTCGA
AGTTAAGGTGCCCGTGCCCCAGCCCTACGAAGTCATCCGCAAGGTGCCCG
TGACCGTTAAGGAGTACGTCAAGGTGCCCGTGCCAGTGCCCCAGCCCTAC
GAAGTGATCCGTCACGAGAAGGTGCCCGTCCATGTGCCCGTCGATCGCCC
AGTGCCCGTTGAGGTGCCCAGGCCCTACCCCGTGCCAGTGGCCAAGCCCT
ACCCTGTCTACGTGGAGAAGGCCGTCAATGTCCAGGTGCCCGTGCATGTG
GATCGTCCCTACCCCGTCTACGTGAAGGTGCCCGTGGTGTCCCACTCCGT
GGTCAAGCACGCACCCACCGTTGCCGTCAGCAGCTACCCTGTTAGCGCCA
TTGGCCACGATGCCACCGTCTACTCCGACCACCATGGTTACCACAAGGCA
AGCTTTCTAGACC

BO04801.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-PA 834 CG16884-RA 1..831 17..847 4155 100 Plus
CG30101-PA 987 CG30101-RA 409..440 452..483 160 100 Plus
CG30101-PA 987 CG30101-RA 472..498 533..559 135 100 Plus
CG16885-PB 471 CG16885-RB 334..360 452..478 135 100 Plus
CG16885-PA 813 CG16885-RA 334..360 452..478 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-RA 1413 CG16884-RA 107..937 17..847 4155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13945232..13946050 847..29 4095 100 Minus
Blast to na_te.dros performed on 2015-02-12 14:09:56 has no hits.

BO04801.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:18 Download gff for BO04801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-PA 1..834 17..851 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:50 Download gff for BO04801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-PA 1..834 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:42 Download gff for BO04801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 95..942 5..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:42 Download gff for BO04801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 95..942 5..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:42 Download gff for BO04801.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13945227..13946050 29..853 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:42 Download gff for BO04801.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13945227..13946050 29..853 99 <- Minus

BO04801.complete Sequence

865 bp (865 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629864

> BO04801.complete
GAAGTTATCAGTCGACATGAAAGTATTCATCTGCTTAGCCGCTCTGCTGG
TGGCCTCCGCCTGCGCCAGCAAAACCGAGGGTGAGAAGGTGCCGCTGGAG
AAGAAGCTGGACAAGCGCGGCCTGCTCGATCTGGGCTACGGCTACGGTCA
TGCTGGTCTGGACACCGGCTACCTGGGACATGGTTCCATCTCCGGCCACG
GAAGCTACGGACATGGCTACGGACTGACCGGATACTCCGCACCCGCTGCC
GTCGCCGTGGGCCACAGTGGTCCCGCGATCGCCGTTGGACACACTGCTCC
CGCCGTCGCTGTCCACCACGCTCCCGCCCCCTATGTGATCAGCAAGCAGG
CCGATGTGCACAAGACCATCACCATCACCAAGGGAATCCCAGTGCCCGTG
CATGTGGACCGCCCCTATCCCGTCGTCCATGAGAAGCGCGTGCCCGTCGA
AGTTAAGGTGCCCGTGCCCCAGCCCTACGAAGTCATCCGCAAGGTGCCCG
TGACCGTTAAGGAGTACGTCAAGGTGCCCGTGCCAGTGCCCCAGCCCTAC
GAAGTGATCCGTCACGAGAAGGTGCCCGTCCATGTGCCCGTCGATCGCCC
AGTGCCCGTTGAGGTGCCCAGGCCCTACCCCGTGCCAGTGGCCAAGCCCT
ACCCTGTCTACGTGGAGAAGGCCGTCAATGTCCAGGTGCCCGTGCATGTG
GATCGTCCCTACCCCGTCTACGTGAAGGTGCCCGTGGTGTCCCACTCCGT
GGTCAAGCACGCACCCACCGTTGCCGTCAGCAGCTACCCTGTTAGCGCCA
TTGGCCACGATGCCACCGTCTACTCCGACCACCATGGTTACCACAAGGCA
AGCTTTCTAGACCAT

BO04801.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-RA 834 CG16884-PA 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-RA 1413 CG16884-RA 107..937 17..847 4155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13945232..13946050 847..29 4095 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:18:05 has no hits.

BO04801.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:00 Download gff for BO04801.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 1..834 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:09 Download gff for BO04801.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 93..940 5..853 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:33 Download gff for BO04801.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 107..937 17..849 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:00 Download gff for BO04801.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 93..940 5..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:18 Download gff for BO04801.complete
Subject Subject Range Query Range Percent Splice Strand
CG16884-RA 107..937 17..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:18 Download gff for BO04801.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13945230..13946050 29..849 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:33 Download gff for BO04801.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13945230..13946050 29..849 99 <- Minus

BO04801.pep Sequence

Translation from 16 to 865

> BO04801.pep
MKVFICLAALLVASACASKTEGEKVPLEKKLDKRGLLDLGYGYGHAGLDT
GYLGHGSISGHGSYGHGYGLTGYSAPAAVAVGHSGPAIAVGHTAPAVAVH
HAPAPYVISKQADVHKTITITKGIPVPVHVDRPYPVVHEKRVPVEVKVPV
PQPYEVIRKVPVTVKEYVKVPVPVPQPYEVIRHEKVPVHVPVDRPVPVEV
PRPYPVPVAKPYPVYVEKAVNVQVPVHVDRPYPVYVKVPVVSHSVVKHAP
TVAVSSYPVSAIGHDATVYSDHHGYHKASFLDH

BO04801.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG16884-PA 277 CG16884-PA 1..277 1..277 1478 100 Plus
CG16885-PA 270 CG16885-PA 9..238 7..272 382 41.8 Plus
CG30101-PA 328 CG30101-PA 1..272 1..258 343 36.9 Plus
CG16886-PB 358 CG16886-PB 66..246 100..262 316 44.6 Plus
CG16886-PA 373 CG16886-PA 66..246 100..262 316 44.6 Plus
CG16886-PB 358 CG16886-PB 135..299 100..259 285 43.8 Plus
CG16886-PB 358 CG16886-PB 151..354 88..283 262 36.2 Plus
CG30101-PA 328 CG30101-PA 180..317 103..248 241 42.9 Plus
CG16886-PB 358 CG16886-PB 73..194 134..264 196 44.2 Plus