Clone Sequence Records
BO04802.3prime Sequence
942 bp (793 high quality bases) assembled on 2005-12-02
> BO04802.3prime
ATGGTCTAGAAAGCTTGCCCGCGTTCTATTATTTGTATTGTGTGCTTCGT
AGTCCATGACTTCCTCATAGATTAGCTCCTTCCACTGCTCCACAGTGTGT
TCCCTTTCGTCCACGCTGTGATCATATGGCTCCGGAGCGGGAGCATCCAC
TTCCTCAGCATCATACCACACGTTGATATATTCATGCTTCAAAGCCTCGT
CCACAGATATCCGCTGCTCTGGATCAATGACTAGCATTTTACTAAGAAGA
TTTCTAGCGTCAGAAGCCTTCCGGCGGCTATTCTGATTATTATCATTTGG
AAACAAGCCATCGGGGAAAAGTCTATCAAATGAGTATCCAGTGTATCTAG
GACGATTTTCCACATAGTTTCGGACGGTTGGCTGTAACCGTTGCATAAAC
GAGGGTGATGGTGTACCTAATTGCTCAATAATTTTATTCCACTGATCTAT
ATGATCCGTTCCAGGAAACAGCACACCGCCCCGTATCATTTCGCCCATAA
TGCAACCGACGGACCATATGTCCACGTTCTCTGTGTATCCCATGCCCAAA
ATGACCTCTGGAGCCCTGTAATATCGGGTGACCACATAGGGAGTCATCAT
AAAGGTAGTTCCTGCAGTACGTGCCAGACCGAAATCCAAAATTTTTAGAG
TGCAGTCGGCCTTTACAACTATATTGGATGGCTTTAAGTCTCTGTGAATA
ATTCCTGCTGAGTGTAAATGTTTTATTCCGCACAACATTTGATAAAGCAA
ATAGGACATTCTGTCGTGATCCAAGTCCATTTGGATGACCTGGCAGAGAT
TAGCGTCCATCAGCTCCATGACCAGGTAGACATCCTGAAACTCTTCCAAG
TTCCTTTGCGGCGTAAAAGCATTAAGTAAGCCAATTATGTTTTTATGGGT
AACAAGCTTCATTAGCTTTGAATTCCCTATATGCTCGCTTGG
BO04802.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5680-PB | 1119 | bsk-RB | 217..1116 | 918..19 | 4475 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bsk-RE | 1655 | CG5680-RE | 584..1506 | 942..19 | 4580 | 99.8 | Minus |
bsk-RF | 1797 | CG5680-RF | 726..1648 | 942..19 | 4580 | 99.8 | Minus |
bsk-RB | 1535 | CG5680-RB | 464..1386 | 942..19 | 4580 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:12:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10247852..10248136 | 142..426 | 1425 | 100 | Plus |
2L | 23513712 | 2L | 10248197..10248461 | 426..690 | 1325 | 100 | Plus |
2L | 23513712 | 2L | 10248524..10248722 | 690..888 | 995 | 100 | Plus |
2L | 23513712 | 2L | 10247651..10247773 | 19..141 | 615 | 100 | Plus |
2L | 23513712 | 2L | 10248785..10248837 | 889..942 | 205 | 96.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:12:16 has no hits.
BO04802.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:19 Download gff for
BO04802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-PB | 194..1119 | 18..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:51 Download gff for
BO04802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5680-PB | 194..1119 | 18..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:12 Download gff for
BO04802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 464..1386 | 19..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:36:54 Download gff for
BO04802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 464..1386 | 19..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:36:54 Download gff for
BO04802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10248525..10248722 | 691..888 | 100 | <- | Plus |
2L | 10248785..10248837 | 889..942 | 96 | | Plus |
2L | 10248197..10248461 | 426..690 | 100 | <- | Plus |
2L | 10247651..10247773 | 19..141 | 100 | <- | Plus |
2L | 10247852..10248135 | 142..425 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:12 Download gff for
BO04802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10247651..10247773 | 19..141 | 100 | <- | Plus |
arm_2L | 10247852..10248135 | 142..425 | 100 | <- | Plus |
arm_2L | 10248197..10248461 | 426..690 | 100 | <- | Plus |
arm_2L | 10248525..10248722 | 691..888 | 100 | <- | Plus |
arm_2L | 10248785..10248837 | 889..942 | 96 | | Plus |
BO04802.5prime Sequence
894 bp (777 high quality bases) assembled on 2005-11-29
> BO04802.5prime
GAAGTTATCAGTCGACATGACGACAGCTCAGCACCAACACTACACCGTCG
AGGTGGGGGACACCAACTTCACCATCCACAGTCGGTACATTAATCTACGG
CCCATAGGATCAGGTGCCCAAGGAATAGTATGCGCCGCTTACGATACTAT
CACCCAGCAAAATGTGGCGATTAAGAAACTATCTCGACCATTCCAAAATG
TAACCCATGCCAAGCGAGCATATAGGGAATTCAAGCTAATGAAGCTTGTT
AACCATAAAAACATAATTGGCTTACTTAATGCTTTTACGCCGCAAAGGAA
CTTGGAAGAGTTTCAGGATGTCTACCTGGTCATGGAGCTGATGGACGCTA
ATCTCTGCCAGGTCATCCAAATGGACTTGGATCACGACAGAATGTCCTAT
TTGCTTTATCAAATGTTGTGCGGAATAAAACATTTACACTCAGCAGGAAT
TATTCACAGAGACTTAAAGCCATCCAATATAGTTGTAAAGGCCGACTGCA
CTCTAAAAATTTTGGATTTCGGTCTGGCACGTACTGCAGGAACTACCTTT
ATGATGACTCCCTATGTGGTCACCCGATATTACAGGGCTCCAGAGGTCAT
TTTGGGCATGGGATACACAGAGAACGTGGACATATGGTCCGTCGGTTGCA
TTATGGGCGAAATGATACGGGGCGGTGTGCTGTTTCCTGGAACGGATCAT
ATAGATCAGTGGAATAAAATTATTGAGCAATTAGGTACACCATCACCCTC
GTTTATGCAACGGTTACAGCCAACCGTCCGAAACTATGTGGAAAATCGTC
CTAGATACACTGGATACTCATTTGATAGACTTTTCCCCGATGGCTTGTTT
CAAATGATAATAATCAGAATAGCCGCCGGAAGGCTTCTGACGCT
BO04802.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5680-PB | 1119 | bsk-RB | 1..835 | 17..851 | 4175 | 100 | Plus |
CG5680-PB | 1119 | bsk-RB | 836..879 | 851..894 | 220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bsk-RE | 1655 | CG5680-RE | 391..1269 | 17..894 | 4370 | 99.9 | Plus |
bsk-RF | 1797 | CG5680-RF | 533..1411 | 17..894 | 4370 | 99.9 | Plus |
bsk-RB | 1535 | CG5680-RB | 271..1149 | 17..894 | 4370 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10248197..10248461 | 725..461 | 1325 | 100 | Minus |
2L | 23513712 | 2L | 10248524..10248722 | 461..263 | 995 | 100 | Minus |
2L | 23513712 | 2L | 10247966..10248136 | 894..725 | 805 | 99.4 | Minus |
2L | 23513712 | 2L | 10248785..10248915 | 262..132 | 655 | 100 | Minus |
2L | 23513712 | 2L | 10249095..10249210 | 132..17 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:28:52 has no hits.
BO04802.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:20 Download gff for
BO04802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-PB | 1..879 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:53 Download gff for
BO04802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5680-PB | 1..879 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:39 Download gff for
BO04802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 260..1149 | 7..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:34:28 Download gff for
BO04802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 260..1149 | 7..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:34:28 Download gff for
BO04802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10247966..10248135 | 726..894 | 99 | <- | Minus |
2L | 10248197..10248461 | 461..725 | 100 | <- | Minus |
2L | 10248525..10248722 | 263..460 | 100 | <- | Minus |
2L | 10248785..10248914 | 133..262 | 100 | <- | Minus |
2L | 10249095..10249221 | 7..132 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:39 Download gff for
BO04802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10247966..10248135 | 726..894 | 99 | <- | Minus |
arm_2L | 10248197..10248461 | 461..725 | 100 | <- | Minus |
arm_2L | 10248525..10248722 | 263..460 | 100 | <- | Minus |
arm_2L | 10248785..10248914 | 133..262 | 100 | <- | Minus |
arm_2L | 10249095..10249221 | 7..132 | 97 | | Minus |
BO04802.complete Sequence
1150 bp (1150 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629865
> BO04802.complete
GAAGTTATCAGTCGACATGACGACAGCTCAGCACCAACACTACACCGTCG
AGGTGGGGGACACCAACTTCACCATCCACAGTCGGTACATTAATCTACGG
CCCATAGGATCAGGTGCCCAAGGAATAGTATGCGCCGCTTACGATACTAT
CACCCAGCAAAATGTGGCGATTAAGAAACTATCTCGACCATTCCAAAATG
TAACCCATGCCAAGCGAGCATATAGGGAATTCAAGCTAATGAAGCTTGTT
AACCATAAAAACATAATTGGCTTACTTAATGCTTTTACGCCGCAAAGGAA
CTTGGAAGAGTTTCAGGATGTCTACCTGGTCATGGAGCTGATGGACGCTA
ATCTCTGCCAGGTCATCCAAATGGACTTGGATCACGACAGAATGTCCTAT
TTGCTTTATCAAATGTTGTGCGGAATAAAACATTTACACTCAGCAGGAAT
TATTCACAGAGACTTAAAGCCATCCAATATAGTTGTAAAGGCCGACTGCA
CTCTAAAAATTTTGGATTTCGGTCTGGCACGTACTGCAGGAACTACCTTT
ATGATGACTCCCTATGTGGTCACCCGATATTACAGGGCTCCAGAGGTCAT
TTTGGGCATGGGATACACAGAGAACGTGGACATATGGTCCGTCGGTTGCA
TTATGGGCGAAATGATACGGGGCGGTGTGCTGTTTCCTGGAACGGATCAT
ATAGATCAGTGGAATAAAATTATTGAGCAATTAGGTACACCATCACCCTC
GTTTATGCAACGGTTACAGCCAACCGTCCGAAACTATGTGGAAAATCGTC
CTAGATACACTGGATACTCATTTGATAGACTTTTCCCCGATGGCTTGTTT
CCAAATGATAATAATCAGAATAGCCGCCGGAAGGCTTCTGACGCTAGAAA
TCTTCTTAGTAAAATGCTAGTCATTGATCCAGAGCAGCGGATATCTGTGG
ACGAGGCTTTGAAGCATGAATATATCAACGTGTGGTATGATGCTGAGGAA
GTGGATGCTCCCGCTCCGGAGCCATATGATCACAGCGTGGACGAAAGGGA
ACACACTGTGGAGCAGTGGAAGGAGCTAATCTATGAGGAAGTCATGGACT
ACGAAGCACACAATACAAATAATAGAACGCGGGCAAGCTTTCTAGACCAT
BO04802.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bsk-RE | 1119 | CG5680-PE | 1..1116 | 17..1132 | 5580 | 100 | Plus |
bsk-RF | 1119 | CG5680-PF | 1..1116 | 17..1132 | 5580 | 100 | Plus |
bsk-RB | 1119 | CG5680-PB | 1..1116 | 17..1132 | 5580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bsk-RE | 1655 | CG5680-RE | 391..1506 | 17..1132 | 5580 | 100 | Plus |
bsk-RF | 1797 | CG5680-RF | 533..1648 | 17..1132 | 5580 | 100 | Plus |
bsk-RB | 1535 | CG5680-RB | 271..1386 | 17..1132 | 5580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10247852..10248136 | 1009..725 | 1425 | 100 | Minus |
2L | 23513712 | 2L | 10248197..10248461 | 725..461 | 1325 | 100 | Minus |
2L | 23513712 | 2L | 10248524..10248722 | 461..263 | 995 | 100 | Minus |
2L | 23513712 | 2L | 10248785..10248915 | 262..132 | 655 | 100 | Minus |
2L | 23513712 | 2L | 10247651..10247773 | 1132..1010 | 615 | 100 | Minus |
2L | 23513712 | 2L | 10249095..10249210 | 132..17 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:44:10 has no hits.
BO04802.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:20 Download gff for
BO04802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 1..1119 | 17..1133 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:04 Download gff for
BO04802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 238..1364 | 7..1132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:34 Download gff for
BO04802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 271..1386 | 17..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:20 Download gff for
BO04802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 238..1364 | 7..1132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:04 Download gff for
BO04802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bsk-RB | 271..1386 | 17..1134 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:04 Download gff for
BO04802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10248197..10248461 | 461..725 | 100 | <- | Minus |
2L | 10248525..10248722 | 263..460 | 100 | <- | Minus |
2L | 10248785..10248914 | 133..262 | 100 | <- | Minus |
2L | 10249095..10249210 | 17..132 | 100 | | Minus |
2L | 10247649..10247773 | 1010..1134 | 98 | <- | Minus |
2L | 10247852..10248135 | 726..1009 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:34 Download gff for
BO04802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10249095..10249210 | 17..132 | 100 | | Minus |
arm_2L | 10247649..10247773 | 1010..1134 | 98 | <- | Minus |
arm_2L | 10247852..10248135 | 726..1009 | 100 | <- | Minus |
arm_2L | 10248197..10248461 | 461..725 | 100 | <- | Minus |
arm_2L | 10248525..10248722 | 263..460 | 100 | <- | Minus |
arm_2L | 10248785..10248914 | 133..262 | 100 | <- | Minus |
BO04802.pep Sequence
Translation from 16 to 1150
> BO04802.pep
MTTAQHQHYTVEVGDTNFTIHSRYINLRPIGSGAQGIVCAAYDTITQQNV
AIKKLSRPFQNVTHAKRAYREFKLMKLVNHKNIIGLLNAFTPQRNLEEFQ
DVYLVMELMDANLCQVIQMDLDHDRMSYLLYQMLCGIKHLHSAGIIHRDL
KPSNIVVKADCTLKILDFGLARTAGTTFMMTPYVVTRYYRAPEVILGMGY
TENVDIWSVGCIMGEMIRGGVLFPGTDHIDQWNKIIEQLGTPSPSFMQRL
QPTVRNYVENRPRYTGYSFDRLFPDGLFPNDNNQNSRRKASDARNLLSKM
LVIDPEQRISVDEALKHEYINVWYDAEEVDAPAPEPYDHSVDEREHTVEQ
WKELIYEEVMDYEAHNTNNRTRASFLDH
BO04802.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bsk-PE | 372 | CG5680-PE | 1..372 | 1..372 | 1979 | 100 | Plus |
bsk-PF | 372 | CG5680-PF | 1..372 | 1..372 | 1979 | 100 | Plus |
bsk-PB | 372 | CG5680-PB | 1..372 | 1..372 | 1979 | 100 | Plus |
p38a-PC | 366 | CG5475-PC | 10..353 | 9..363 | 808 | 48.5 | Plus |
p38a-PB | 366 | CG5475-PB | 10..353 | 9..363 | 808 | 48.5 | Plus |