Clone Sequence Records
BO04803.3prime Sequence
930 bp (846 high quality bases) assembled on 2005-12-02
> BO04803.3prime
ATGGTCTAGAAAGCTTGCATTGTTGGTAAATAGCGTTGAAACAGCTCGAA
GAAAGTTTTTTTCAAACTCTTGCTCAGAAAACCGTTCCACGGAGGCCCTG
GCTGCGTTTCGAATGCCGTTCATTTCTGAGTTGTTAACAATAATATTTAA
TATGTTTTCTGCGTATTCAACGGCGTCAGTAGCCAGGAATCCGTTCTGAC
TTCCCGCGGAAGTTTCGACAATGTCAAGCAAAGGACCCCCTGACTTGTGG
GCCACCATTATAAGGCCAGCAGCCATGGACTCGACGATGCCGATGCCAAA
ATGTTCGTTCCACATAGTGTGAATGCCAATGTGGGCAGTTTGATACAACT
TAAGAAGGTCTTCGTAAGGGACATTCACACTAAATTGCACATTGTTTTCT
AGCGACAGATGCTTTGTCAGGTCCTGCATGTTTTTCAACCGCTCGTAGTC
ATCTTCATTTCGGCAGGAGCCCACAATAACCAACTTAATTTGGTTCCAAA
GGGCCTCGTCTTGGGCCAAGAGAGTTCGGAGCTCGTATATGGCTTGCAGC
TGGAGGGGATGGTCTTTCTCCGGGCGGAACTGTCCGACAGACAGTATGAT
GAATTCGTCGCCTTTTTCCGTGTGCTGAAGGCTCTTTAGGTGACTAACCT
CGCACGGAGGGTAAACCCGGTGTGTTTTGAAGGGCACATCCCACAGTTGC
AGAATATGATTCTCGGTCCACGAGGAGTTCACCATGATAGTCTCAGCACA
ACAGCCAACCCACTTGTACATTCTTGAGAAGAGGCGGTAGTAGGCAAGCT
TAGTCCAGGTGAGAAAGGGGTTCCTCGCCACGTACTTCTTGTTGTTGTGC
GACATCTGTCGCTGCTGAACCCTCTTCAGCATATCGGTGCTAATAAACCG
GATAGTGAACATAGCAGCCCACCTTGGACT
BO04803.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11306-PA | 1428 | CG11306-RA | 548..1425 | 896..19 | 4390 | 100 | Minus |
CG11306-PA | 1428 | CG11306-RA | 515..549 | 930..896 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11306-RB | 1994 | CG11306-RB | 784..1694 | 930..19 | 4535 | 99.9 | Minus |
CG11306-RA | 1563 | CG11306-RA | 608..1518 | 930..19 | 4535 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21627462..21628136 | 771..97 | 3375 | 100 | Minus |
3L | 28110227 | 3L | 21627243..21627400 | 930..772 | 745 | 99.4 | Minus |
3L | 28110227 | 3L | 21628191..21628271 | 99..19 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:53:01 has no hits.
BO04803.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:21 Download gff for
BO04803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11306-PA | 515..1428 | 15..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:53 Download gff for
BO04803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11306-PA | 515..1428 | 15..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:43:09 Download gff for
BO04803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11306-RA | 608..1521 | 15..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:10 Download gff for
BO04803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11306-RA | 608..1521 | 15..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:10 Download gff for
BO04803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21627243..21627400 | 772..930 | 99 | -> | Minus |
3L | 21627462..21628135 | 98..771 | 100 | -> | Minus |
3L | 21628193..21628274 | 15..97 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:43:09 Download gff for
BO04803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21621293..21621374 | 15..97 | 97 | | Minus |
arm_3L | 21620343..21620500 | 772..930 | 99 | -> | Minus |
arm_3L | 21620562..21621235 | 98..771 | 100 | -> | Minus |
BO04803.5prime Sequence
895 bp (810 high quality bases) assembled on 2005-11-29
> BO04803.5prime
GAAGTTATCAGTCGACATGTTTCTGTTTCTGTTTCTTCTCTGGTTGTTGT
TATCGCTTGTGTTGGTGGCAGTACTCTCTTTCCTTTTCCTGAGGCAATGG
TTGCTTGGCCGGAAGAATAAGTTGCACACATCGTCGGAAAATGGCATCAA
CGTGGGCATTTTTCACCCGTATTGCAACGCGGGTGGCGGCGGAGAACGCG
TCTTGTGGTGCGCCGTGAGAGCACTACAGGAAAAGTACCAGAACGCCAGG
ATGGTAATCTACACAGGCGACATAGACGCTTCTCCCAATTCCATACTGCA
AAAGGCCAAGAATGTCTTCAACATTGCCGTCGATAGTGACAATGTGAAGT
TCGTCTTCCTGAAGCAACGCCACTGGATCGAGGCCAAGAACTATCCTCAT
TTCACTCTGCTGGGCCAGAGCATTGGATCGATGGTCGTGGGTCTGGAGGC
ACTCTGCAGGTTTCCGCCCGACATCTACATCGACACCATGGGATACGCCT
TTACGTATCCTCTGTTCCGCTACTTGGCCCAGTCCAAGGTGGGCTGCTAT
GTTCACTATCCGGTTATTAGCACCGATATGCTGAAGAGGGTTCAGCAGCG
ACAGATGTCGCACAACAACAAGAAGTACGTGGCGAGGAACCCCTTTCTCA
CCTGGACTAAGCTTGCCTACTACCGCCTCTTCTCAAGAATGTACAAGTGG
GTTGGCTGTTGTGCTGAGACTATCATGGTGAACTCCTCGTGGACCGAGAA
TCATATTCTGCAACTGTGGGATGTGCCCTTCAAAACACACCGGGTTTACC
CTCCGTGCGAGGTTAGTCACCTAAAGAGCCTTCAGCACACGGAAAAAGGC
GACGAATTCATCATACTGTCTGTCGGACCGTTCCGCCCGGAGAAA
BO04803.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11306-PA | 1428 | CG11306-RA | 1..879 | 17..895 | 4370 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11306-RB | 1994 | CG11306-RB | 270..1148 | 17..895 | 4380 | 99.9 | Plus |
CG11306-RA | 1563 | CG11306-RA | 94..972 | 17..895 | 4380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21626940..21627400 | 228..688 | 2305 | 100 | Plus |
3L | 28110227 | 3L | 21627462..21627668 | 689..895 | 1020 | 99.5 | Plus |
3L | 28110227 | 3L | 21626432..21626625 | 37..230 | 970 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:27:19 has no hits.
BO04803.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:22 Download gff for
BO04803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11306-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:55 Download gff for
BO04803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11306-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:13 Download gff for
BO04803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11306-RA | 85..969 | 9..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:52 Download gff for
BO04803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11306-RA | 85..969 | 9..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:52 Download gff for
BO04803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21626432..21626624 | 37..229 | 100 | -> | Plus |
3L | 21626942..21627400 | 230..688 | 100 | -> | Plus |
3L | 21627462..21627665 | 689..892 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:13 Download gff for
BO04803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21620562..21620765 | 689..892 | 99 | | Plus |
arm_3L | 21619532..21619724 | 37..229 | 100 | -> | Plus |
arm_3L | 21620042..21620500 | 230..688 | 100 | -> | Plus |
BO04803.complete Sequence
1459 bp (1459 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629866
> BO04803.complete
GAAGTTATCAGTCGACATGTTTCTGTTTCTGTTTCTTCTCTGGTTGTTGT
TATCGCTTGTGTTGGTGGCAGTACTCTCTTTCCTTTTCCTGAGGCAATGG
TTGCTTGGCCGGAAGAATAAGTTGCACACATCGTCGGAAAATGGCATCAA
CGTGGGCATTTTTCACCCGTATTGCAACGCGGGTGGCGGCGGAGAACGCG
TCTTGTGGTGCGCCGTGAGAGCACTACAGGAAAAGTACCAGAACGCCAGG
ATGGTAATCTACACAGGCGACATAGACGCTTCTCCCAATTCCATACTGCA
AAAGGCCAAGAATGTCTTCAACATTGCCGTCGATAGTGACAATGTGAAGT
TCGTCTTCCTGAAGCAACGCCACTGGATCGAGGCCAAGAACTATCCTCAT
TTCACTCTGCTGGGCCAGAGCATTGGATCGATGGTCGTGGGTCTGGAGGC
ACTCTGCAGGTTTCCGCCCGACATCTACATCGACACCATGGGATACGCCT
TTACGTATCCTCTGTTCCGCTACTTGGCCCAGTCCAAGGTGGGCTGCTAT
GTTCACTATCCGGTTATTAGCACCGATATGCTGAAGAGGGTTCAGCAGCG
ACAGATGTCGCACAACAACAAGAAGTACGTGGCGAGGAACCCCTTTCTCA
CCTGGACTAAGCTTGCCTACTACCGCCTCTTCTCAAGAATGTACAAGTGG
GTTGGCTGTTGTGCTGAGACTATCATGGTGAACTCCTCGTGGACCGAGAA
TCATATTCTGCAACTGTGGGATGTGCCCTTCAAAACACACCGGGTTTACC
CTCCGTGCGAGGTTAGTCACCTAAAGAGCCTTCAGCACACGGAAAAAGGC
GACGAATTCATCATACTGTCTGTCGGACAGTTCCGCCCGGAGAAAGACCA
TCCCCTCCAGCTGCAAGCCATATACGAGCTCCGAACTCTCTTGGCCCAAG
ACGAGGCCCTTTGGAACCAAATTAAGTTGGTTATTGTGGGCTCCTGCCGA
AATGAAGATGACTACGAGCGGTTGAAAAACATGCAGGACCTGACAAAGCA
TCTGTCGCTAGAAAACAATGTGCAATTTAGTGTGAATGTCCCTTACGAAG
ACCTTCTTAAGTTGTATCAAACTGCCCACATTGGCATTCACACTATGTGG
AACGAACATTTTGGCATCGGCATCGTCGAGTCCATGGCTGCTGGCCTTAT
AATGGTGGCCCACAAGTCAGGGGGTCCTTTGCTTGACATTGTCGAAACTT
CCGCGGGAAGTCAGAACGGATTCCTGGCTACTGACGCCGTTGAATACGCA
GAAAACATATTAAATATTATTGTTAACAACTCAGAAATGAACGGCATTCG
AAACGCAGCCAGGGCCTCCGTGGAACGGTTTTCTGAGCAAGAGTTTGAAA
AAAACTTTCTTCGAGCTGTTTCAACGCTATTTACCAACAATGCAAGCTTT
CTAGACCAT
BO04803.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:20:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11306-RB | 1428 | CG11306-PB | 1..1425 | 17..1441 | 7125 | 100 | Plus |
CG11306-RA | 1428 | CG11306-PA | 1..1425 | 17..1441 | 7125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11306-RB | 1994 | CG11306-RB | 270..1694 | 17..1441 | 7125 | 100 | Plus |
CG11306-RA | 1563 | CG11306-RA | 94..1518 | 17..1441 | 7125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21627462..21628136 | 689..1363 | 3375 | 100 | Plus |
3L | 28110227 | 3L | 21626940..21627400 | 228..688 | 2305 | 100 | Plus |
3L | 28110227 | 3L | 21626432..21626625 | 37..230 | 970 | 100 | Plus |
3L | 28110227 | 3L | 21628191..21628271 | 1361..1441 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:20:01 has no hits.
BO04803.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:21 Download gff for
BO04803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11306-RA | 1..1428 | 17..1445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:06 Download gff for
BO04803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11306-RA | 72..1508 | 9..1445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:15 Download gff for
BO04803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11306-RA | 100..1518 | 23..1443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:21 Download gff for
BO04803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11306-RA | 72..1508 | 9..1445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:25 Download gff for
BO04803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11306-RA | 100..1518 | 23..1443 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:25 Download gff for
BO04803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21626432..21626624 | 37..229 | 100 | -> | Plus |
3L | 21626942..21627400 | 230..688 | 100 | -> | Plus |
3L | 21627462..21628135 | 689..1362 | 100 | -> | Plus |
3L | 21628193..21628271 | 1363..1443 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:15 Download gff for
BO04803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21619532..21619724 | 37..229 | 100 | -> | Plus |
arm_3L | 21620042..21620500 | 230..688 | 100 | -> | Plus |
arm_3L | 21620562..21621235 | 689..1362 | 100 | -> | Plus |
arm_3L | 21621293..21621371 | 1363..1443 | 97 | | Plus |
BO04803.pep Sequence
Translation from 16 to 1459
> BO04803.pep
MFLFLFLLWLLLSLVLVAVLSFLFLRQWLLGRKNKLHTSSENGINVGIFH
PYCNAGGGGERVLWCAVRALQEKYQNARMVIYTGDIDASPNSILQKAKNV
FNIAVDSDNVKFVFLKQRHWIEAKNYPHFTLLGQSIGSMVVGLEALCRFP
PDIYIDTMGYAFTYPLFRYLAQSKVGCYVHYPVISTDMLKRVQQRQMSHN
NKKYVARNPFLTWTKLAYYRLFSRMYKWVGCCAETIMVNSSWTENHILQL
WDVPFKTHRVYPPCEVSHLKSLQHTEKGDEFIILSVGQFRPEKDHPLQLQ
AIYELRTLLAQDEALWNQIKLVIVGSCRNEDDYERLKNMQDLTKHLSLEN
NVQFSVNVPYEDLLKLYQTAHIGIHTMWNEHFGIGIVESMAAGLIMVAHK
SGGPLLDIVETSAGSQNGFLATDAVEYAENILNIIVNNSEMNGIRNAARA
SVERFSEQEFEKNFLRAVSTLFTNNASFLDH
BO04803.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11306-PB | 475 | CG11306-PB | 1..475 | 1..475 | 2507 | 100 | Plus |
CG11306-PA | 475 | CG11306-PA | 1..475 | 1..475 | 2507 | 100 | Plus |
CG1291-PA | 424 | CG1291-PA | 223..356 | 281..414 | 155 | 30.9 | Plus |