Clone Sequence Records
BO04804.3prime Sequence
803 bp (802 high quality bases) assembled on 2005-12-02
> BO04804.3prime
ATGGTCTAGAAAGCTTGCCATAATGATCTGCGGTTCTGGGACACTGGCCG
CAATGCTTTTATGGGGCAAGACCTGGCCTCCATTAATGTAGAGCTCATCC
TTCACGATTACATCCTCGCCTAGCACGGTGATGCCTTCGATGCGAACCCA
ACGGCCAACTGTAGAACGCCAACCGACAATGCAGGAGTCCAGCCATGAGT
GTGAGCGAACGATGGCGCCTTTGAGGATGGTCGAGCGCTTAATGCACACG
CCATCCTCGATGACCACGTCCGGTCCAATGGTTACATTAGGCCCTATGCG
ACAACCCTCGCCGATTTTGGCCGTGGGATCCACCAACACGTTGCCCACCA
CTCCAGGGCCTGTGTACAGCTTGGGGGATTGCTTCTGGCGCAGCGAGCTT
AGATACAGACACATGCCGGTTAGGAAGTCTTTTGGCTGTCCGATGTCCAT
CCAGAATCCAGTTAAATCCATTGCATACAACTCCTGTTGCTGCGTCATTT
CAGGGAACACCTCCTTCTCTATTGATGTGGGCTTAACTTCGATCCGGTCA
AGCACGGAGGGATTAAAGATGTAAATGCCGGCATTGATCTTATTGCTAAC
GAACTCTTGTGGCTTTTCAATAAAGTTTTTTATACAGCCGTTCTCATCGT
ACAGCACAACTCCGTATTTGGATGGTTCTTCGACCTTTGTGACAACAATT
GTGCCTTCTTTTCCGTGATTACAATGGAATTGCACTAGTTGTTTAAATGG
AAAATCGCATATAACGTCCGAATTGAGCACGAAAAATGGCTCTGAGCTGG
CTG
BO04804.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1129-PB | 1110 | CG1129-RB | 323..1107 | 803..19 | 3925 | 100 | Minus |
CG1129-PA | 1110 | CG1129-RA | 323..1107 | 803..19 | 3925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1129-RE | 2499 | CG1129-RE | 1587..2371 | 803..19 | 3925 | 100 | Minus |
CG1129-RD | 1612 | CG1129-RD | 487..1271 | 803..19 | 3925 | 100 | Minus |
CG1129-RA | 1715 | CG1129-RA | 590..1374 | 803..19 | 3925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:39:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4815286..4815684 | 417..19 | 1995 | 100 | Minus |
3R | 32079331 | 3R | 4814387..4814774 | 803..416 | 1940 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 05:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G2 | 3102 | G2 G2 3102bp | 170..235 | 554..489 | 114 | 63.6 | Minus |
BO04804.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:23 Download gff for
BO04804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-PA | 323..1110 | 16..803 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:56 Download gff for
BO04804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-PA | 323..1110 | 16..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:06 Download gff for
BO04804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RB | 729..1519 | 13..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:53 Download gff for
BO04804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RA | 590..1380 | 13..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:53 Download gff for
BO04804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4814387..4814773 | 417..803 | 100 | -> | Minus |
3R | 4815287..4815690 | 13..416 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:06 Download gff for
BO04804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 640109..640495 | 417..803 | 100 | -> | Minus |
arm_3R | 641009..641412 | 13..416 | 99 | | Minus |
BO04804.5prime Sequence
914 bp (866 high quality bases) assembled on 2005-11-29
> BO04804.5prime
GAAGTTATCAGTCGACATGTGTGGAAATCCAGCTGTGGGAAACGGGACGA
GGGCGTTGATTCTGGTCGGTGGTTATGGGACCCGGCTGCGACCCCTGACC
CTCAGCACGCCCAAGCCACTGGTGGAGTTTGCCAATAAGCCGATTCTTCT
CCACCAACTGGAGGCACTCGTCGATGCGGGATGTCGTCAGGTTATTTTAG
CCGTCAGCTATCGAGCCGAGCAAATGGAAAAGGAGCTTAAAGTCGAAGCC
AAGAAACTGGGCGTGGAATTGATCTTCTCACACGAGACGGAACCCCTGGG
AACAGCTGGACCTCTGGCCCTAGCAAAAACGATTTTAGCAGCCAGCTCAG
AGCCATTTTTCGTGCTCAATTCGGACGTTATATGCGATTTTCCATTTAAA
CAACTAGTGCAATTCCATTGTAATCACGGAAAAGAAGGCACAATTGTTGT
CACAAAGGTCGAAGAACCATCCAAATACGGAGTTGTGCTGTACGATGAGA
ACGGCTGTATAAAAAACTTTATTGAAAAGCCACAAGAGTTCGTTAGCAAT
AAGATCAATGCCGGCATTTACATCTTTAATCCCTCCGTGCTTGACCGGAT
CGAAGTTAAGCCCACATCAATAGAGAAGGAGGTGTTCCCTGAAATGACGC
AGCAACAGGAGTTGTATGCAATGGATTTAACTGGATTCTGGATGGACATC
GGACAGCCAAAAGACTTCCTAACCGGCATGTGTCTGTATCTAAGCTCGCT
GCGCCAGAAGCAATCCCCCAAGCTGTACACAGGCCCTGGAGTGGTGGGCA
ACGTGTTGGTGGATCCCACGGCCAAAATCGGCGAGGGTTGTCGCATAGGG
CCTAATGTAACCATTGGACGGGACGTGGTCATCGAGGATGGCGTGTGCAT
TAAGCGCTCGACCA
BO04804.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1129-PB | 1110 | CG1129-RB | 1..898 | 17..914 | 4465 | 99.8 | Plus |
CG1129-PA | 1110 | CG1129-RA | 1..898 | 17..914 | 4465 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1129-RE | 2499 | CG1129-RE | 1265..2162 | 17..914 | 4475 | 99.9 | Plus |
CG1129-RD | 1612 | CG1129-RD | 165..1062 | 17..914 | 4475 | 99.9 | Plus |
CG1129-RA | 1715 | CG1129-RA | 268..1165 | 17..914 | 4475 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4814236..4814774 | 188..726 | 2695 | 100 | Plus |
3R | 32079331 | 3R | 4815286..4815475 | 725..914 | 935 | 99.5 | Plus |
3R | 32079331 | 3R | 4813803..4813978 | 17..192 | 880 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 10:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G2 | 3102 | G2 G2 3102bp | 170..235 | 588..653 | 114 | 63.6 | Plus |
Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 2982..3035 | 279..332 | 108 | 66.7 | Plus |
BO04804.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:24 Download gff for
BO04804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:58 Download gff for
BO04804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:53 Download gff for
BO04804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RB | 403..1303 | 10..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:43 Download gff for
BO04804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RA | 264..1164 | 10..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:43 Download gff for
BO04804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4813799..4813976 | 10..190 | 98 | -> | Plus |
3R | 4814239..4814773 | 191..725 | 100 | -> | Plus |
3R | 4815287..4815474 | 726..913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:53 Download gff for
BO04804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 639521..639698 | 10..190 | 98 | -> | Plus |
arm_3R | 639961..640495 | 191..725 | 100 | -> | Plus |
arm_3R | 641009..641196 | 726..913 | 99 | | Plus |
BO04804.complete Sequence
1141 bp (1141 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629867
> BO04804.complete
GAAGTTATCAGTCGACATGTGTGGAAATCCAGCTGTGGGAAACGGGACGA
GGGCGTTGATTCTGGTCGGTGGTTATGGGACCCGGCTGCGACCCCTGACC
CTCAGCACGCCCAAGCCACTGGTGGAGTTTGCCAATAAGCCGATTCTTCT
CCACCAACTGGAGGCACTCGTCGATGCGGGATGTCGTCAGGTTATTTTAG
CCGTCAGCTATCGAGCCGAGCAAATGGAAAAGGAGCTTAAAGTCGAAGCC
AAGAAACTGGGCGTGGAATTGATCTTCTCACACGAGACGGAACCCCTGGG
AACAGCTGGACCTCTGGCCCTAGCAAAAACGATTTTAGCAGCCAGCTCAG
AGCCATTTTTCGTGCTCAATTCGGACGTTATATGCGATTTTCCATTTAAA
CAACTAGTGCAATTCCATTGTAATCACGGAAAAGAAGGCACAATTGTTGT
CACAAAGGTCGAAGAACCATCCAAATACGGAGTTGTGCTGTACGATGAGA
ACGGCTGTATAAAAAACTTTATTGAAAAGCCACAAGAGTTCGTTAGCAAT
AAGATCAATGCCGGCATTTACATCTTTAATCCCTCCGTGCTTGACCGGAT
CGAAGTTAAGCCCACATCAATAGAGAAGGAGGTGTTCCCTGAAATGACGC
AGCAACAGGAGTTGTATGCAATGGATTTAACTGGATTCTGGATGGACATC
GGACAGCCAAAAGACTTCCTAACCGGCATGTGTCTGTATCTAAGCTCGCT
GCGCCAGAAGCAATCCCCCAAGCTGTACACAGGCCCTGGAGTGGTGGGCA
ACGTGTTGGTGGATCCCACGGCCAAAATCGGCGAGGGTTGTCGCATAGGG
CCTAATGTAACCATTGGACCGGACGTGGTCATCGAGGATGGCGTGTGCAT
TAAGCGCTCGACCATCCTCAAAGGCGCCATCGTTCGCTCACACTCATGGC
TGGACTCCTGCATTGTCGGTTGGCGTTCTACAGTTGGCCGTTGGGTTCGC
ATCGAAGGCATCACCGTGCTAGGCGAGGATGTAATCGTGAAGGATGAGCT
CTACATTAATGGAGGCCAGGTCTTGCCCCATAAAAGCATTGCGGCCAGTG
TCCCAGAACCGCAGATCATTATGGCAAGCTTTCTAGACCAT
BO04804.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1129-RE | 1110 | CG1129-PE | 1..1107 | 17..1123 | 5535 | 100 | Plus |
CG1129-RD | 1110 | CG1129-PD | 1..1107 | 17..1123 | 5535 | 100 | Plus |
CG1129-RA | 1110 | CG1129-PA | 1..1107 | 17..1123 | 5535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1129-RE | 2499 | CG1129-RE | 1265..2371 | 17..1123 | 5535 | 100 | Plus |
CG1129-RD | 1612 | CG1129-RD | 165..1271 | 17..1123 | 5535 | 100 | Plus |
CG1129-RA | 1715 | CG1129-RA | 268..1374 | 17..1123 | 5535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4814236..4814774 | 188..726 | 2695 | 100 | Plus |
3R | 32079331 | 3R | 4815286..4815684 | 725..1123 | 1995 | 100 | Plus |
3R | 32079331 | 3R | 4813803..4813978 | 17..192 | 880 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G2 | 3102 | G2 G2 3102bp | 170..235 | 588..653 | 114 | 63.6 | Plus |
BO04804.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:02 Download gff for
BO04804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RA | 1..1110 | 17..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:43 Download gff for
BO04804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RA | 245..1361 | 10..1129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:37 Download gff for
BO04804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RB | 407..1513 | 17..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:02 Download gff for
BO04804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RA | 245..1361 | 10..1129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:21 Download gff for
BO04804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1129-RA | 268..1374 | 17..1125 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:21 Download gff for
BO04804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4813803..4813976 | 17..190 | 100 | -> | Plus |
3R | 4814239..4814773 | 191..725 | 100 | -> | Plus |
3R | 4815287..4815684 | 726..1125 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:37 Download gff for
BO04804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 639525..639698 | 17..190 | 100 | -> | Plus |
arm_3R | 639961..640495 | 191..725 | 100 | -> | Plus |
arm_3R | 641009..641406 | 726..1125 | 99 | | Plus |
BO04804.pep Sequence
Translation from 16 to 1141
> BO04804.pep
MCGNPAVGNGTRALILVGGYGTRLRPLTLSTPKPLVEFANKPILLHQLEA
LVDAGCRQVILAVSYRAEQMEKELKVEAKKLGVELIFSHETEPLGTAGPL
ALAKTILAASSEPFFVLNSDVICDFPFKQLVQFHCNHGKEGTIVVTKVEE
PSKYGVVLYDENGCIKNFIEKPQEFVSNKINAGIYIFNPSVLDRIEVKPT
SIEKEVFPEMTQQQELYAMDLTGFWMDIGQPKDFLTGMCLYLSSLRQKQS
PKLYTGPGVVGNVLVDPTAKIGEGCRIGPNVTIGPDVVIEDGVCIKRSTI
LKGAIVRSHSWLDSCIVGWRSTVGRWVRIEGITVLGEDVIVKDELYINGG
QVLPHKSIAASVPEPQIIMASFLDH
BO04804.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1129-PE | 369 | CG1129-PE | 1..369 | 1..369 | 1919 | 100 | Plus |
CG1129-PD | 369 | CG1129-PD | 1..369 | 1..369 | 1919 | 100 | Plus |
CG1129-PA | 369 | CG1129-PA | 1..369 | 1..369 | 1919 | 100 | Plus |
CG1129-PB | 369 | CG1129-PB | 1..369 | 1..369 | 1919 | 100 | Plus |
CG8207-PA | 438 | CG8207-PA | 3..431 | 12..361 | 386 | 27.9 | Plus |