Clone BO04804 Report

Search the DGRC for BO04804

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG1129-RA
Protein status:BO04804.pep: validated full length
Sequenced Size:1141

Clone Sequence Records

BO04804.3prime Sequence

803 bp (802 high quality bases) assembled on 2005-12-02

> BO04804.3prime
ATGGTCTAGAAAGCTTGCCATAATGATCTGCGGTTCTGGGACACTGGCCG
CAATGCTTTTATGGGGCAAGACCTGGCCTCCATTAATGTAGAGCTCATCC
TTCACGATTACATCCTCGCCTAGCACGGTGATGCCTTCGATGCGAACCCA
ACGGCCAACTGTAGAACGCCAACCGACAATGCAGGAGTCCAGCCATGAGT
GTGAGCGAACGATGGCGCCTTTGAGGATGGTCGAGCGCTTAATGCACACG
CCATCCTCGATGACCACGTCCGGTCCAATGGTTACATTAGGCCCTATGCG
ACAACCCTCGCCGATTTTGGCCGTGGGATCCACCAACACGTTGCCCACCA
CTCCAGGGCCTGTGTACAGCTTGGGGGATTGCTTCTGGCGCAGCGAGCTT
AGATACAGACACATGCCGGTTAGGAAGTCTTTTGGCTGTCCGATGTCCAT
CCAGAATCCAGTTAAATCCATTGCATACAACTCCTGTTGCTGCGTCATTT
CAGGGAACACCTCCTTCTCTATTGATGTGGGCTTAACTTCGATCCGGTCA
AGCACGGAGGGATTAAAGATGTAAATGCCGGCATTGATCTTATTGCTAAC
GAACTCTTGTGGCTTTTCAATAAAGTTTTTTATACAGCCGTTCTCATCGT
ACAGCACAACTCCGTATTTGGATGGTTCTTCGACCTTTGTGACAACAATT
GTGCCTTCTTTTCCGTGATTACAATGGAATTGCACTAGTTGTTTAAATGG
AAAATCGCATATAACGTCCGAATTGAGCACGAAAAATGGCTCTGAGCTGG
CTG

BO04804.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-PB 1110 CG1129-RB 323..1107 803..19 3925 100 Minus
CG1129-PA 1110 CG1129-RA 323..1107 803..19 3925 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-RE 2499 CG1129-RE 1587..2371 803..19 3925 100 Minus
CG1129-RD 1612 CG1129-RD 487..1271 803..19 3925 100 Minus
CG1129-RA 1715 CG1129-RA 590..1374 803..19 3925 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4815286..4815684 417..19 1995 100 Minus
3R 32079331 3R 4814387..4814774 803..416 1940 100 Minus
Blast to na_te.dros performed 2015-02-13 05:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
G2 3102 G2 G2 3102bp 170..235 554..489 114 63.6 Minus

BO04804.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:23 Download gff for BO04804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-PA 323..1110 16..803 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:56 Download gff for BO04804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-PA 323..1110 16..803 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:06 Download gff for BO04804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-RB 729..1519 13..803 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:53 Download gff for BO04804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 590..1380 13..803 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:53 Download gff for BO04804.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4814387..4814773 417..803 100 -> Minus
3R 4815287..4815690 13..416 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:06 Download gff for BO04804.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 640109..640495 417..803 100 -> Minus
arm_3R 641009..641412 13..416 99   Minus

BO04804.5prime Sequence

914 bp (866 high quality bases) assembled on 2005-11-29

> BO04804.5prime
GAAGTTATCAGTCGACATGTGTGGAAATCCAGCTGTGGGAAACGGGACGA
GGGCGTTGATTCTGGTCGGTGGTTATGGGACCCGGCTGCGACCCCTGACC
CTCAGCACGCCCAAGCCACTGGTGGAGTTTGCCAATAAGCCGATTCTTCT
CCACCAACTGGAGGCACTCGTCGATGCGGGATGTCGTCAGGTTATTTTAG
CCGTCAGCTATCGAGCCGAGCAAATGGAAAAGGAGCTTAAAGTCGAAGCC
AAGAAACTGGGCGTGGAATTGATCTTCTCACACGAGACGGAACCCCTGGG
AACAGCTGGACCTCTGGCCCTAGCAAAAACGATTTTAGCAGCCAGCTCAG
AGCCATTTTTCGTGCTCAATTCGGACGTTATATGCGATTTTCCATTTAAA
CAACTAGTGCAATTCCATTGTAATCACGGAAAAGAAGGCACAATTGTTGT
CACAAAGGTCGAAGAACCATCCAAATACGGAGTTGTGCTGTACGATGAGA
ACGGCTGTATAAAAAACTTTATTGAAAAGCCACAAGAGTTCGTTAGCAAT
AAGATCAATGCCGGCATTTACATCTTTAATCCCTCCGTGCTTGACCGGAT
CGAAGTTAAGCCCACATCAATAGAGAAGGAGGTGTTCCCTGAAATGACGC
AGCAACAGGAGTTGTATGCAATGGATTTAACTGGATTCTGGATGGACATC
GGACAGCCAAAAGACTTCCTAACCGGCATGTGTCTGTATCTAAGCTCGCT
GCGCCAGAAGCAATCCCCCAAGCTGTACACAGGCCCTGGAGTGGTGGGCA
ACGTGTTGGTGGATCCCACGGCCAAAATCGGCGAGGGTTGTCGCATAGGG
CCTAATGTAACCATTGGACGGGACGTGGTCATCGAGGATGGCGTGTGCAT
TAAGCGCTCGACCA

BO04804.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-PB 1110 CG1129-RB 1..898 17..914 4465 99.8 Plus
CG1129-PA 1110 CG1129-RA 1..898 17..914 4465 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-RE 2499 CG1129-RE 1265..2162 17..914 4475 99.9 Plus
CG1129-RD 1612 CG1129-RD 165..1062 17..914 4475 99.9 Plus
CG1129-RA 1715 CG1129-RA 268..1165 17..914 4475 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4814236..4814774 188..726 2695 100 Plus
3R 32079331 3R 4815286..4815475 725..914 935 99.5 Plus
3R 32079331 3R 4813803..4813978 17..192 880 100 Plus
Blast to na_te.dros performed 2015-02-12 10:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
G2 3102 G2 G2 3102bp 170..235 588..653 114 63.6 Plus
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 2982..3035 279..332 108 66.7 Plus

BO04804.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:24 Download gff for BO04804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:58 Download gff for BO04804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:53 Download gff for BO04804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-RB 403..1303 10..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:43 Download gff for BO04804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 264..1164 10..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:43 Download gff for BO04804.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4813799..4813976 10..190 98 -> Plus
3R 4814239..4814773 191..725 100 -> Plus
3R 4815287..4815474 726..913 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:53 Download gff for BO04804.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 639521..639698 10..190 98 -> Plus
arm_3R 639961..640495 191..725 100 -> Plus
arm_3R 641009..641196 726..913 99   Plus

BO04804.complete Sequence

1141 bp (1141 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629867

> BO04804.complete
GAAGTTATCAGTCGACATGTGTGGAAATCCAGCTGTGGGAAACGGGACGA
GGGCGTTGATTCTGGTCGGTGGTTATGGGACCCGGCTGCGACCCCTGACC
CTCAGCACGCCCAAGCCACTGGTGGAGTTTGCCAATAAGCCGATTCTTCT
CCACCAACTGGAGGCACTCGTCGATGCGGGATGTCGTCAGGTTATTTTAG
CCGTCAGCTATCGAGCCGAGCAAATGGAAAAGGAGCTTAAAGTCGAAGCC
AAGAAACTGGGCGTGGAATTGATCTTCTCACACGAGACGGAACCCCTGGG
AACAGCTGGACCTCTGGCCCTAGCAAAAACGATTTTAGCAGCCAGCTCAG
AGCCATTTTTCGTGCTCAATTCGGACGTTATATGCGATTTTCCATTTAAA
CAACTAGTGCAATTCCATTGTAATCACGGAAAAGAAGGCACAATTGTTGT
CACAAAGGTCGAAGAACCATCCAAATACGGAGTTGTGCTGTACGATGAGA
ACGGCTGTATAAAAAACTTTATTGAAAAGCCACAAGAGTTCGTTAGCAAT
AAGATCAATGCCGGCATTTACATCTTTAATCCCTCCGTGCTTGACCGGAT
CGAAGTTAAGCCCACATCAATAGAGAAGGAGGTGTTCCCTGAAATGACGC
AGCAACAGGAGTTGTATGCAATGGATTTAACTGGATTCTGGATGGACATC
GGACAGCCAAAAGACTTCCTAACCGGCATGTGTCTGTATCTAAGCTCGCT
GCGCCAGAAGCAATCCCCCAAGCTGTACACAGGCCCTGGAGTGGTGGGCA
ACGTGTTGGTGGATCCCACGGCCAAAATCGGCGAGGGTTGTCGCATAGGG
CCTAATGTAACCATTGGACCGGACGTGGTCATCGAGGATGGCGTGTGCAT
TAAGCGCTCGACCATCCTCAAAGGCGCCATCGTTCGCTCACACTCATGGC
TGGACTCCTGCATTGTCGGTTGGCGTTCTACAGTTGGCCGTTGGGTTCGC
ATCGAAGGCATCACCGTGCTAGGCGAGGATGTAATCGTGAAGGATGAGCT
CTACATTAATGGAGGCCAGGTCTTGCCCCATAAAAGCATTGCGGCCAGTG
TCCCAGAACCGCAGATCATTATGGCAAGCTTTCTAGACCAT

BO04804.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-RE 1110 CG1129-PE 1..1107 17..1123 5535 100 Plus
CG1129-RD 1110 CG1129-PD 1..1107 17..1123 5535 100 Plus
CG1129-RA 1110 CG1129-PA 1..1107 17..1123 5535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-RE 2499 CG1129-RE 1265..2371 17..1123 5535 100 Plus
CG1129-RD 1612 CG1129-RD 165..1271 17..1123 5535 100 Plus
CG1129-RA 1715 CG1129-RA 268..1374 17..1123 5535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4814236..4814774 188..726 2695 100 Plus
3R 32079331 3R 4815286..4815684 725..1123 1995 100 Plus
3R 32079331 3R 4813803..4813978 17..192 880 100 Plus
Blast to na_te.dros performed 2014-11-27 16:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
G2 3102 G2 G2 3102bp 170..235 588..653 114 63.6 Plus

BO04804.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:02 Download gff for BO04804.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 1..1110 17..1126 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:43 Download gff for BO04804.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 245..1361 10..1129 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:37 Download gff for BO04804.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RB 407..1513 17..1125 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:02 Download gff for BO04804.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 245..1361 10..1129 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:21 Download gff for BO04804.complete
Subject Subject Range Query Range Percent Splice Strand
CG1129-RA 268..1374 17..1125 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:21 Download gff for BO04804.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4813803..4813976 17..190 100 -> Plus
3R 4814239..4814773 191..725 100 -> Plus
3R 4815287..4815684 726..1125 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:37 Download gff for BO04804.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 639525..639698 17..190 100 -> Plus
arm_3R 639961..640495 191..725 100 -> Plus
arm_3R 641009..641406 726..1125 99   Plus

BO04804.pep Sequence

Translation from 16 to 1141

> BO04804.pep
MCGNPAVGNGTRALILVGGYGTRLRPLTLSTPKPLVEFANKPILLHQLEA
LVDAGCRQVILAVSYRAEQMEKELKVEAKKLGVELIFSHETEPLGTAGPL
ALAKTILAASSEPFFVLNSDVICDFPFKQLVQFHCNHGKEGTIVVTKVEE
PSKYGVVLYDENGCIKNFIEKPQEFVSNKINAGIYIFNPSVLDRIEVKPT
SIEKEVFPEMTQQQELYAMDLTGFWMDIGQPKDFLTGMCLYLSSLRQKQS
PKLYTGPGVVGNVLVDPTAKIGEGCRIGPNVTIGPDVVIEDGVCIKRSTI
LKGAIVRSHSWLDSCIVGWRSTVGRWVRIEGITVLGEDVIVKDELYINGG
QVLPHKSIAASVPEPQIIMASFLDH

BO04804.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1129-PE 369 CG1129-PE 1..369 1..369 1919 100 Plus
CG1129-PD 369 CG1129-PD 1..369 1..369 1919 100 Plus
CG1129-PA 369 CG1129-PA 1..369 1..369 1919 100 Plus
CG1129-PB 369 CG1129-PB 1..369 1..369 1919 100 Plus
CG8207-PA 438 CG8207-PA 3..431 12..361 386 27.9 Plus