Clone Sequence Records
BO04805.3prime Sequence
945 bp (853 high quality bases) assembled on 2005-12-02
> BO04805.3prime
ATGGTCTAGAAAGCTTGCGAAGAGCTTCTGCATGTGAATGCGATCCTGGA
CGTTACGTGCCTGCTGCTGATCCTCGATGGACTTGAGCTCCTTAGACACG
GTCGACTTGAGGCTGGCGTCCAAGGCCAAGGCGTCGAGGAAGTCGCGACG
TGCCTGTGCTGGATTCCAGGCACCCGCATGGGCCTTGGCCCGACGAAAAA
GTGCCTTGACATTGCGCGGATCCAGGGTGAGCACCTCGTTGCAGTGCTCG
ATCACAGCGTAGAAGTCGCCGGCGATCAACCGACATTGCGCGTAGTTCAA
CAACAGCGGTGTCTTGATGGCCGCCAGCTCCTGCCACTCCTCGTCGTGCG
GCTTCTCCTTTAGCATCAGCTGCTCCACAATTCCGACAGCCTCGCGGTAG
CAGGTCTCCGCCTCTGTGAACCGACTGGCCTTATAGAAGTTGTTGCCCCG
TTCGCGCAGCGTACTGGTGGCCAGCATCTTTTCGTCGTCGGACATCTGCC
AGCGCTCTTTTTCGTACTGCTCGGGCAGCTCAATGGAGAACAGTTCAATG
ATGAACTCCAGATCGGAAGGATTTTGCAGCAGCTCATCCAGGTCGGTGTA
CCCAATGCCCTCGTTCTGCAATGTCATTCCGCAGCAGTGACGTCGCTCCT
CCGGTTTCTTGCCAATGTCCCGCAGGGTCTTGGATATAAAAGGATATTGA
GCGCAGAGCGACTTATGTACCGTGAACTTGGCCACTTCGTTAAGGGACAT
CTGCTGCACAATCAGCTCCCAGACCTCTAGCTTAAACTTCTTCCCCAGGA
CCAGCTCCATGGGCTTCTCCATCTTGCGGCTATCATCGATGATGCGACTG
TCGCCGGCCCTCCGCGTTTGAAAGTGGAACTTCACCCTGGTGCCCCGGGG
TAGCTCGATGTAGGCGTTTCCCGGATTGAGGATCTCCTTTCGTAT
BO04805.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-PA | 963 | CG1847-RA | 34..960 | 945..19 | 4585 | 99.7 | Minus |
CG1847-PB | 996 | CG1847-RB | 126..993 | 886..19 | 4340 | 100 | Minus |
CG1847-PB | 996 | CG1847-RB | 34..93 | 945..886 | 250 | 96.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-RC | 1776 | CG1847-RC | 111..1037 | 945..19 | 4605 | 99.8 | Minus |
CG1847-RA | 1776 | CG1847-RA | 111..1037 | 945..19 | 4605 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11869739..11870429 | 709..19 | 3455 | 100 | Minus |
X | 23542271 | X | 11869481..11869658 | 886..709 | 890 | 100 | Minus |
X | 23542271 | X | 11869280..11869343 | 945..882 | 290 | 96.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:39:59 has no hits.
BO04805.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:25 Download gff for
BO04805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-PA | 34..963 | 18..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:59 Download gff for
BO04805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-PA | 34..963 | 18..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:08 Download gff for
BO04805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 111..1037 | 19..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:02 Download gff for
BO04805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 111..1037 | 19..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:02 Download gff for
BO04805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11869280..11869339 | 886..945 | 96 | -> | Minus |
X | 11869482..11869658 | 709..885 | 100 | -> | Minus |
X | 11869740..11870429 | 19..708 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:08 Download gff for
BO04805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11763515..11763691 | 709..885 | 100 | -> | Minus |
arm_X | 11763313..11763372 | 886..945 | 96 | -> | Minus |
arm_X | 11763773..11764462 | 19..708 | 100 | | Minus |
BO04805.5prime Sequence
958 bp (827 high quality bases) assembled on 2005-11-29
> BO04805.5prime
GAAGTTATCAGTCGACATGCAGTCGCGCAGCAAGTCCGATATGAAGCCCA
TACGAAAGGAGATCCTCAATCCGGGAAACGCCTACATCGAGCTAACCCCG
GGCACCAGGGTGAAGTTCCACTTTCAAACGCGGAGGGCCGGCGACAGTCG
CATCATCGATGATAGCCGCAAGATGGAGAAGCCCATGGAGCTGGTCCTGG
GGAAGAAGTTTAAGCTAGAGGTCTGGGAGCTGATTGTGCAGCAGATGTCC
CTTAACGAAGTGGCCAAGTTCACGGTACATAAGTCGCTCTGCGCTCAATA
TCCTTTTATATCCAAGACCCTGCGGGACATTGGCAAGAAACCGGAGGAGC
GACGTCACTGCTGCGGAATGACATTGCAGAACGAGGGCATTGGGTACACC
GACCTGGATGAGCTGCTGCAAAATCCTTCCGATCTGGAGTTCATCATTGA
ACTGTTCTCCATTGAGCTGCCCGAGCAGTACGAAAAAGAGCGCTGGCAGA
TGTCCGACGACGAAAAGATGCTGGCCACCAGTACGCTGCGCGAACGGGGC
AACAACTTCTATAAGGCCAGTCGGTTCACAGAGGCGGAGACCTGCTACCG
CGAGGCTGTCGGAATTGTGGAGCAGCTGATGCTAAAGGAGAAGCCGCACG
ACGAGGAGTGGCAGGAGCTGGCGGCCATCAAGACACCGCTGTTGTTGAAC
TACGCGCAATGTCGGTTGATCGCCGGCGACTTCTACGCTGTGATCGAGCA
CTGCAACGAGGTGCTCACCCTGGATCCGCGCAATGTCAAGGCACTTTTTC
GTCGGGCCAAGGCCCATGCGGGTGCCTGGAATCCAGCACAGGCACGTCGC
GACTTCCTCGACGCCTTGGCCTTGGACGCCAGCCTCAAGTCGACCGTGTC
TAAGGAGCTCAAGTCCATCGAGGATCAGCAGCAGGCACGTAACGTCCAGG
ATCGCATT
BO04805.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-PA | 963 | CG1847-RA | 1..942 | 17..958 | 4710 | 100 | Plus |
CG1847-PB | 996 | CG1847-RB | 126..975 | 109..958 | 4250 | 100 | Plus |
CG1847-PB | 996 | CG1847-RB | 1..93 | 17..109 | 465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-RC | 1776 | CG1847-RC | 78..1019 | 17..958 | 4710 | 100 | Plus |
CG1847-RA | 1776 | CG1847-RA | 78..1019 | 17..958 | 4710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11869739..11870411 | 286..958 | 3365 | 100 | Plus |
X | 23542271 | X | 11869481..11869658 | 109..286 | 890 | 100 | Plus |
X | 23542271 | X | 11869247..11869343 | 17..113 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:40:03 has no hits.
BO04805.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:26 Download gff for
BO04805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-PA | 1..942 | 17..958 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:00 Download gff for
BO04805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-PA | 1..942 | 17..958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:44 Download gff for
BO04805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 67..1019 | 5..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:34 Download gff for
BO04805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 67..1019 | 5..958 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:34 Download gff for
BO04805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11869236..11869339 | 5..109 | 95 | -> | Plus |
X | 11869482..11869658 | 110..286 | 100 | -> | Plus |
X | 11869740..11870411 | 287..958 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:44 Download gff for
BO04805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11763269..11763372 | 5..109 | 95 | -> | Plus |
arm_X | 11763515..11763691 | 110..286 | 100 | -> | Plus |
arm_X | 11763773..11764444 | 287..958 | 100 | | Plus |
BO04805.complete Sequence
994 bp (994 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629868
> BO04805.complete
GAAGTTATCAGTCGACATGCAGTCGCGCAGCAAGTCCGATATGAAGCCCA
TACGAAAGGAGATCCTCAATCCGGGAAACGCCTACATCGAGCTAACCCCG
GGCACCAGGGTGAAGTTCCACTTTCAAACGCGGAGGGCCGGCGACAGTCG
CATCATCGATGATAGCCGCAAGATGGAGAAGCCCATGGAGCTGGTCCTGG
GGAAGAAGTTTAAGCTAGAGGTCTGGGAGCTGATTGTGCAGCAGATGTCC
CTTAACGAAGTGGCCAAGTTCACGGTACATAAGTCGCTCTGCGCTCAATA
TCCTTTTATATCCAAGACCCTGCGGGACATTGGCAAGAAACCGGAGGAGC
GACGTCACTGCTGCGGAATGACATTGCAGAACGAGGGCATTGGGTACACC
GACCTGGATGAGCTGCTGCAAAATCCTTCCGATCTGGAGTTCATCATTGA
ACTGTTCTCCATTGAGCTGCCCGAGCAGTACGAAAAAGAGCGCTGGCAGA
TGTCCGACGACGAAAAGATGCTGGCCACCAGTACGCTGCGCGAACGGGGC
AACAACTTCTATAAGGCCAGTCGGTTCACAGAGGCGGAGACCTGCTACCG
CGAGGCTGTCGGAATTGTGGAGCAGCTGATGCTAAAGGAGAAGCCGCACG
ACGAGGAGTGGCAGGAGCTGGCGGCCATCAAGACACCGCTGTTGTTGAAC
TACGCGCAATGTCGGTTGATCGCCGGCGACTTCTACGCTGTGATCGAGCA
CTGCAACGAGGTGCTCACCCTGGATCCGCGCAATGTCAAGGCACTTTTTC
GTCGGGCCAAGGCCCATGCGGGTGCCTGGAATCCAGCACAGGCACGTCGC
GACTTCCTCGACGCCTTGGCCTTGGACGCCAGCCTCAAGTCGACCGTGTC
TAAGGAGCTCAAGTCCATCGAGGATCAGCAGCAGGCACGTAACGTCCAGG
ATCGCATTCACATGCAGAAGCTCTTCGCAAGCTTTCTAGACCAT
BO04805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-RC | 1029 | CG1847-PC | 1..960 | 17..976 | 4800 | 100 | Plus |
CG1847-RA | 963 | CG1847-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-RC | 1776 | CG1847-RC | 78..1037 | 17..976 | 4800 | 100 | Plus |
CG1847-RA | 1776 | CG1847-RA | 78..1037 | 17..976 | 4800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11869739..11870429 | 286..976 | 3455 | 100 | Plus |
X | 23542271 | X | 11869481..11869658 | 109..286 | 890 | 100 | Plus |
X | 23542271 | X | 11869247..11869343 | 17..113 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:14:18 has no hits.
BO04805.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:03 Download gff for
BO04805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 1..963 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:45 Download gff for
BO04805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 49..1019 | 5..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:24 Download gff for
BO04805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 78..1037 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:04 Download gff for
BO04805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 49..1019 | 5..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:27 Download gff for
BO04805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1847-RA | 78..1037 | 17..978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:27 Download gff for
BO04805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11869247..11869339 | 17..109 | 100 | -> | Plus |
X | 11869482..11869658 | 110..286 | 100 | -> | Plus |
X | 11869740..11870429 | 287..978 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:24 Download gff for
BO04805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11763280..11763372 | 17..109 | 100 | -> | Plus |
arm_X | 11763515..11763691 | 110..286 | 100 | -> | Plus |
arm_X | 11763773..11764462 | 287..978 | 99 | | Plus |
BO04805.pep Sequence
Translation from 16 to 994
> BO04805.pep
MQSRSKSDMKPIRKEILNPGNAYIELTPGTRVKFHFQTRRAGDSRIIDDS
RKMEKPMELVLGKKFKLEVWELIVQQMSLNEVAKFTVHKSLCAQYPFISK
TLRDIGKKPEERRHCCGMTLQNEGIGYTDLDELLQNPSDLEFIIELFSIE
LPEQYEKERWQMSDDEKMLATSTLRERGNNFYKASRFTEAETCYREAVGI
VEQLMLKEKPHDEEWQELAAIKTPLLLNYAQCRLIAGDFYAVIEHCNEVL
TLDPRNVKALFRRAKAHAGAWNPAQARRDFLDALALDASLKSTVSKELKS
IEDQQQARNVQDRIHMQKLFASFLDH
BO04805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1847-PA | 320 | CG1847-PA | 1..320 | 1..320 | 1658 | 100 | Plus |
CG1847-PC | 342 | CG1847-PC | 1..320 | 1..320 | 1658 | 100 | Plus |
FKBP59-PB | 439 | CG4535-PB | 239..389 | 158..315 | 174 | 25.9 | Plus |
FKBP59-PA | 439 | CG4535-PA | 239..389 | 158..315 | 174 | 25.9 | Plus |
CG8336-PD | 383 | CG8336-PD | 148..383 | 98..321 | 157 | 25.4 | Plus |