Clone Sequence Records
BO04806.3prime Sequence
365 bp (364 high quality bases) assembled on 2005-12-02
> BO04806.3prime
ATGGTCTAGAAAGCTTGCTTCAGCGGCCAGCACTTGGCAAGGGTTTGCGC
TGAAGTGCTCGAAAGGGAAAAGCAATACACTATCCAAATAGCTAAGAAGT
GAAATGTACTGAACCACACTGCGTATACTTACTCGGTCGTTTTTCCTTGC
CCTGTTGCGATTTCTGGCTCTCAACTGCCCGCCTGTTCGCCTCCGTCTCA
GCCCGCAGGAGCACATCGTCGAGCGCCTCCCGCAACGCGGCCATGTTCTG
GGGATTTTGCTTGAAGGCCTCAATCCGCGCCTCCAGTGACTCCGTTTCGA
TTCCATCAACGCTGTCCGGAGACGCTGGCTCGGGATCCGCAAATCTGGCA
TGTCGACTGATAACT
BO04806.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-PC | 336 | CG9368-RC | 1..333 | 351..19 | 1665 | 100 | Minus |
| CG9368-PA | 549 | CG9368-RA | 4..225 | 352..131 | 1110 | 100 | Minus |
| CG9368-PB | 534 | CG9368-RB | 4..223 | 352..133 | 1100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:27:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-RD | 2423 | CG9368-RD | 144..477 | 352..19 | 1670 | 100 | Minus |
| CG9368-RA | 1828 | CG9368-RA | 144..365 | 352..131 | 1110 | 100 | Minus |
| CG9368-RB | 1813 | CG9368-RB | 144..363 | 352..133 | 1100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19601776..19601977 | 352..151 | 1010 | 100 | Minus |
| 3L | 28110227 | 3L | 19602039..19602174 | 154..19 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:27:31 has no hits.
BO04806.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:27 Download gff for
BO04806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-PC | 1..336 | 18..351 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:01 Download gff for
BO04806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-PC | 1..336 | 18..351 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:14 Download gff for
BO04806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RD | 144..477 | 19..352 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:11:33 Download gff for
BO04806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RD | 144..477 | 19..352 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:11:33 Download gff for
BO04806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19601776..19601976 | 152..352 | 100 | -> | Minus |
| 3L | 19602042..19602174 | 19..151 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:14 Download gff for
BO04806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19594876..19595076 | 152..352 | 100 | -> | Minus |
| arm_3L | 19595142..19595274 | 19..151 | 100 | | Minus |
BO04806.5prime Sequence
365 bp (364 high quality bases) assembled on 2005-11-29
> BO04806.5prime
GAAGTTATCAGTCGACATGCCAGATTTGCGGATCCCGAGCCAGCGTCTCC
GGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATTGAGG
CCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCTCGAC
GATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTGAGAG
CCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAGTAAGTATACGCAGT
GTGGTTCAGTACATTTCACTTCTTAGCTATTTGGATAGTGTATTGCTTTT
CCCTTTCGAGCACTTCAGCGCAAACCCTTGCCAAGTGCTGGCCGCTGAAG
CAAGCTTTCTAGACC
BO04806.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-PC | 336 | CG9368-RC | 1..333 | 17..349 | 1665 | 100 | Plus |
| CG9368-PA | 549 | CG9368-RA | 4..225 | 16..237 | 1110 | 100 | Plus |
| CG9368-PB | 534 | CG9368-RB | 4..223 | 16..235 | 1100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-RD | 2423 | CG9368-RD | 144..477 | 16..349 | 1670 | 100 | Plus |
| CG9368-RA | 1828 | CG9368-RA | 144..365 | 16..237 | 1110 | 100 | Plus |
| CG9368-RB | 1813 | CG9368-RB | 144..363 | 16..235 | 1100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:56:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19601776..19601977 | 16..217 | 1010 | 100 | Plus |
| 3L | 28110227 | 3L | 19602039..19602174 | 214..349 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:56:43 has no hits.
BO04806.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:28 Download gff for
BO04806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-PC | 1..336 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:02 Download gff for
BO04806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-PC | 1..336 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:23 Download gff for
BO04806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RD | 144..477 | 16..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:49 Download gff for
BO04806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RD | 144..477 | 16..349 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:49 Download gff for
BO04806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19601776..19601976 | 16..216 | 100 | -> | Plus |
| 3L | 19602042..19602174 | 217..349 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:23 Download gff for
BO04806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19594876..19595076 | 16..216 | 100 | -> | Plus |
| arm_3L | 19595142..19595274 | 217..349 | 100 | | Plus |
BO04806.complete Sequence
367 bp (367 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629869
> BO04806.complete
GAAGTTATCAGTCGACATGCCAGATTTGCGGATCCCGAGCCAGCGTCTCC
GGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATTGAGG
CCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCTCGAC
GATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTGAGAG
CCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAGTAAGTATACGCAGT
GTGGTTCAGTACATTTCACTTCTTAGCTATTTGGATAGTGTATTGCTTTT
CCCTTTCGAGCACTTCAGCGCAAACCCTTGCCAAGTGCTGGCCGCTGAAG
CAAGCTTTCTAGACCAT
BO04806.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-RD | 264 | CG9368-PD | 4..264 | 16..276 | 1305 | 100 | Plus |
| CG9368-RA | 549 | CG9368-PA | 4..225 | 16..237 | 1110 | 100 | Plus |
| CG9368-RB | 534 | CG9368-PB | 4..223 | 16..235 | 1100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-RD | 2423 | CG9368-RD | 144..477 | 16..349 | 1670 | 100 | Plus |
| CG9368-RA | 1828 | CG9368-RA | 144..365 | 16..237 | 1110 | 100 | Plus |
| CG9368-RB | 1813 | CG9368-RB | 144..363 | 16..235 | 1100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19601776..19601977 | 16..217 | 1010 | 100 | Plus |
| 3L | 28110227 | 3L | 19602039..19602174 | 214..349 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:22:15 has no hits.
BO04806.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:05 Download gff for
BO04806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RC | 1..336 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:47 Download gff for
BO04806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RC | 123..456 | 16..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:55 Download gff for
BO04806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RD | 145..477 | 17..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:05 Download gff for
BO04806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RC | 123..456 | 16..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:15 Download gff for
BO04806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RD | 145..477 | 17..351 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:15 Download gff for
BO04806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19602042..19602174 | 217..351 | 98 | | Plus |
| 3L | 19601777..19601976 | 17..216 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:55 Download gff for
BO04806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19594877..19595076 | 17..216 | 100 | -> | Plus |
| arm_3L | 19595142..19595274 | 217..351 | 98 | | Plus |
BO04806.pep Sequence
Translation from 16 to 367
> BO04806.pep
MPDLRIPSQRLRTALMESKRSHWRRGLRPSSKIPRTWPRCGRRSTMCSCG
LRRRRTGGQLRARNRNRARKNDRVSIRSVVQYISLLSYLDSVLLFPFEHF
SANPCQVLAAEASFLDH
Sequence BO04806.pep has no blast hits.
