Clone BO04815 Report

Search the DGRC for BO04815

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG13349-RA
Protein status:BO04815.pep: validated full length
Sequenced Size:1201

Clone Sequence Records

BO04815.3prime Sequence

977 bp (798 high quality bases) assembled on 2005-12-02

> BO04815.3prime
ATGGTCTAGAAAGCTTGCCTTTTGCTTCTCCTCCTGTTTTTCGGTAGCGG
GATCTGTGTTCTCATCGCGGGCCACTGAAGTTGGGGTTTCGGGATCGCTG
GCCTTCTTCTCGCTGGCGGAGGGTTTGCCACCCATGGTGGCACCGGGGGG
CAGACTCTTCTCCAGAGCACGCACAAAATCCTCTAGATTGCCAGAGAAGG
CGGCGGCCACTGCTTCGTTGGACAACTCGAATTGCTTGATCACAGGTCCC
AGCTGGGCCGATTGCAGGGCACTGGAGAACTGGGCCAGAGCCTGCTGGAA
CTGCGGGGAGGTGATATTGTCCTTGATCTGCTGCTTGCGATCATCGTCCA
CATCCTCCGACTCGGGCAGGTGCACGATCAGCGTCTTGACATGCTCCGGA
TCGGCAATTATCTGATTGATGGCATCGGCGCCGGGTAGGGCCGTCGATAG
GTCAATATTCAGGGATCGTCCGGGGGCATCCGCATCAACGGAGGAGCCGG
CACCTTCGCCGACCTGCGAGTTCACATTGCTGCTGCTGCGGCTGCTGCCC
GATTTCGATGGAGCGCTCGGAGTGCGCGGCACACTGACGTTTTCGGGCGT
CTGCAAGGCCGATGCCCCACCGCCACCCGATGAGGAGGTGTTGCGCGACG
AGGGCGTCCGGGAGTTCATTTGGCCCAGCAGCGAGCTGAGACCACCCATC
TGGCCAACGCCGCCGAAGAGCTGCATCAGCTGCTGCTGCGACATGTTGTT
GAGCATGTACTGGAGGTCGCCGTCGTTGCTGCCGCCGCCGCCGCGCTGGT
GGGCGGATGGAGGGTTGTTCAGCAGCTCGTTGATGCGGCGGCACTGCTCG
TCGTCCTTGTCCGTCTTGGGCTCCTGCATCCAGAAGAACATGCGGCGTGT
CGATGACTTGAACTAAAGCACATAGACCCGGCCCGTCTTGCACTGATCGA
CGCGCTTGTACTCGAAGTCATCGGGGA

BO04815.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13349-PA 1170 CG13349-RA 209..1167 977..19 4745 99.7 Minus
CG13349-PB 1170 CG13349-RB 209..1167 977..19 4745 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn13-RF 1390 CG13349-RF 329..1287 977..19 4765 99.8 Minus
Rpn13-RB 1390 CG13349-RB 329..1287 977..19 4765 99.8 Minus
Rpn13-RA 1377 CG13349-RA 316..1274 977..19 4765 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13958648..13959100 19..471 2265 100 Plus
2R 25286936 2R 13959568..13959880 665..977 1535 99.4 Plus
2R 25286936 2R 13959204..13959398 470..664 975 100 Plus
Blast to na_te.dros performed on 2015-02-04 19:29:01 has no hits.

BO04815.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:35 Download gff for BO04815.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13349-PA 210..1170 18..976 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:11 Download gff for BO04815.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13349-PB 210..1170 18..976 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:41 Download gff for BO04815.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RA 317..1280 11..976 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:34:35 Download gff for BO04815.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RA 317..1280 11..976 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:34:35 Download gff for BO04815.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13958642..13959099 11..470 99 <- Plus
2R 13959205..13959398 471..664 100 <- Plus
2R 13959568..13959879 665..976 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:41 Download gff for BO04815.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9846147..9846604 11..470 99 <- Plus
arm_2R 9846710..9846903 471..664 100 <- Plus
arm_2R 9847073..9847384 665..976 99   Plus

BO04815.5prime Sequence

889 bp (840 high quality bases) assembled on 2005-11-29

> BO04815.5prime
GAAGTTATCAGTCGACATGTTTGGAAGACAAAGTGGACTGGGTAGTTCCA
GCAACAGCAGCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACATGGTG
GGCAAGATGGTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGACCCA
GAGTGACGATGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCCGGCA
AGGTGGAGGACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAAGCGC
GTCGATCAGTGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGTCATC
GACACGCCGCATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAGGACG
ACGAGCAGTGCCGCCGCATCAACGAGCTGCTGAACAACCCTCCATCCGCC
CACCAGCGCGGCGGCGGCGGCAGCAACGACGGCGACCTCCAGTACATGCT
CAACAACATGTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTTGGCC
AGATGGGTGGTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGACGCCC
TCGTCGCGCAACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCTTGCA
GACGCCCGAAAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCGAAAT
CGGGCAGCAGCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGAAGGT
GCCGGCTCCTCCGTTGATGCGGATGCCCCCGGACGATCCCTGAATATTGA
CCTATCGACGGCCCTACCCGGCGCCGATGCCATCAATCAGATAATTGCCG
ATCCGGAGCATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCGGAGGAT
GTGGACGATGATCGCAAGCAGCAGATCAAGGACAATATC

BO04815.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13349-PA 1170 CG13349-RA 1..873 17..889 4365 100 Plus
CG13349-PB 1170 CG13349-RB 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn13-RF 1390 CG13349-RF 120..993 16..889 4370 100 Plus
Rpn13-RB 1390 CG13349-RB 120..993 16..889 4370 100 Plus
Rpn13-RA 1377 CG13349-RA 107..980 16..889 4370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13959568..13960089 537..16 2610 100 Minus
2R 25286936 2R 13959204..13959398 732..538 975 100 Minus
2R 25286936 2R 13958942..13959100 889..731 795 100 Minus
Blast to na_te.dros performed on 2015-02-12 14:10:23 has no hits.

BO04815.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:35 Download gff for BO04815.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13349-PA 1..873 17..889 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:13 Download gff for BO04815.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13349-PB 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:53 Download gff for BO04815.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RA 107..980 16..889 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:24 Download gff for BO04815.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RA 107..980 16..889 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:24 Download gff for BO04815.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13958942..13959099 732..889 100 <- Minus
2R 13959205..13959398 538..731 100 <- Minus
2R 13959568..13960089 16..537 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:53 Download gff for BO04815.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9846447..9846604 732..889 100 <- Minus
arm_2R 9846710..9846903 538..731 100 <- Minus
arm_2R 9847073..9847594 16..537 100   Minus

BO04815.complete Sequence

1201 bp (1201 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629872

> BO04815.complete
GAAGTTATCAGTCGACATGTTTGGAAGACAAAGTGGACTGGGTAGTTCCA
GCAACAGCAGCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACATGGTG
GGCAAGATGGTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGACCCA
GAGTGACGATGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCCGGCA
AGGTGGAGGACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAAGCGC
GTCGATCAGTGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGTCATC
GACACGCCGCATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAGGACG
ACGAGCAGTGCCGCCGCATCAACGAGCTGCTGAACAACCCTCCATCCGCC
CACCAGCGCGGCGGCGGCGGCAGCAACGACGGCGACCTCCAGTACATGCT
CAACAACATGTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTTGGCC
AGATGGGTGGTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGACGCCC
TCGTCGCGCAACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCTTGCA
GACGCCCGAAAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCGAAAT
CGGGCAGCAGCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGAAGGT
GCCGGCTCCTCCGTTGATGCGGATGCCCCCGGACGATCCCTGAATATTGA
CCTATCGACGGCCCTACCCGGCGCCGATGCCATCAATCAGATAATTGCCG
ATCCGGAGCATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCGGAGGAT
GTGGACGATGATCGCAAGCAGCAGATCAAGGACAATATCACCTCCCCGCA
GTTCCAGCAGGCTCTGGCCCAGTTCTCCAGTGCCCTGCAATCGGCCCAGC
TGGGACCTGTGATCAAGCAATTCGAGTTGTCCAACGAAGCAGTGGCCGCC
GCCTTCTCTGGCAATCTAGAGGATTTTGTGCGTGCTCTGGAGAAGAGTCT
GCCCCCCGGTGCCACCATGGGTGGCAAACCCTCCGCCAGCGAGAAGAAGG
CCAGCGATCCCGAAACCCCAACTTCAGTGGCCCGCGATGAGAACACAGAT
CCCGCTACCGAAAAACAGGAGGAGAAGCAAAAGGCAAGCTTTCTAGACCA
T

BO04815.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn13-RF 1170 CG13349-PF 1..1167 17..1183 5835 100 Plus
Rpn13-RB 1170 CG13349-PB 1..1167 17..1183 5835 100 Plus
Rpn13-RA 1170 CG13349-PA 1..1167 17..1183 5835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn13-RF 1390 CG13349-RF 120..1287 16..1183 5840 100 Plus
Rpn13-RB 1390 CG13349-RB 120..1287 16..1183 5840 100 Plus
Rpn13-RA 1377 CG13349-RA 107..1274 16..1183 5840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13959568..13960089 537..16 2610 100 Minus
2R 25286936 2R 13958648..13959100 1183..731 2265 100 Minus
2R 25286936 2R 13959204..13959398 732..538 975 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:01:05 has no hits.

BO04815.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:09 Download gff for BO04815.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RA 1..1170 17..1184 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:52 Download gff for BO04815.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RA 107..1280 16..1191 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:41 Download gff for BO04815.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RA 114..1274 23..1185 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:09 Download gff for BO04815.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RA 107..1280 16..1191 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:05 Download gff for BO04815.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RA 114..1274 23..1185 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:05 Download gff for BO04815.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13958644..13959099 732..1185 99 <- Minus
2R 13959205..13959398 538..731 100 <- Minus
2R 13959568..13960082 23..537 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:41 Download gff for BO04815.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9846149..9846604 732..1185 99 <- Minus
arm_2R 9846710..9846903 538..731 100 <- Minus
arm_2R 9847073..9847587 23..537 100   Minus

BO04815.pep Sequence

Translation from 16 to 1201

> BO04815.pep
MFGRQSGLGSSSNSSNLVEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGL
MHFCWKDRTSGKVEDDLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMF
FWMQEPKTDKDDEQCRRINELLNNPPSAHQRGGGGSNDGDLQYMLNNMSQ
QQLMQLFGGVGQMGGLSSLLGQMNSRTPSSRNTSSSGGGGASALQTPENV
SVPRTPSAPSKSGSSRSSSNVNSQVGEGAGSSVDADAPGRSLNIDLSTAL
PGADAINQIIADPEHVKTLIVHLPESEDVDDDRKQQIKDNITSPQFQQAL
AQFSSALQSAQLGPVIKQFELSNEAVAAAFSGNLEDFVRALEKSLPPGAT
MGGKPSASEKKASDPETPTSVARDENTDPATEKQEEKQKASFLDH

BO04815.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn13-PF 389 CG13349-PF 1..389 1..389 2001 100 Plus
Rpn13-PB 389 CG13349-PB 1..389 1..389 2001 100 Plus
Rpn13-PA 389 CG13349-PA 1..389 1..389 2001 100 Plus
Rpn13-PE 424 CG13349-PE 1..424 1..389 1955 91.7 Plus
Rpn13-PD 424 CG13349-PD 1..424 1..389 1955 91.7 Plus