Clone Sequence Records
BO04815.3prime Sequence
977 bp (798 high quality bases) assembled on 2005-12-02
> BO04815.3prime
ATGGTCTAGAAAGCTTGCCTTTTGCTTCTCCTCCTGTTTTTCGGTAGCGG
GATCTGTGTTCTCATCGCGGGCCACTGAAGTTGGGGTTTCGGGATCGCTG
GCCTTCTTCTCGCTGGCGGAGGGTTTGCCACCCATGGTGGCACCGGGGGG
CAGACTCTTCTCCAGAGCACGCACAAAATCCTCTAGATTGCCAGAGAAGG
CGGCGGCCACTGCTTCGTTGGACAACTCGAATTGCTTGATCACAGGTCCC
AGCTGGGCCGATTGCAGGGCACTGGAGAACTGGGCCAGAGCCTGCTGGAA
CTGCGGGGAGGTGATATTGTCCTTGATCTGCTGCTTGCGATCATCGTCCA
CATCCTCCGACTCGGGCAGGTGCACGATCAGCGTCTTGACATGCTCCGGA
TCGGCAATTATCTGATTGATGGCATCGGCGCCGGGTAGGGCCGTCGATAG
GTCAATATTCAGGGATCGTCCGGGGGCATCCGCATCAACGGAGGAGCCGG
CACCTTCGCCGACCTGCGAGTTCACATTGCTGCTGCTGCGGCTGCTGCCC
GATTTCGATGGAGCGCTCGGAGTGCGCGGCACACTGACGTTTTCGGGCGT
CTGCAAGGCCGATGCCCCACCGCCACCCGATGAGGAGGTGTTGCGCGACG
AGGGCGTCCGGGAGTTCATTTGGCCCAGCAGCGAGCTGAGACCACCCATC
TGGCCAACGCCGCCGAAGAGCTGCATCAGCTGCTGCTGCGACATGTTGTT
GAGCATGTACTGGAGGTCGCCGTCGTTGCTGCCGCCGCCGCCGCGCTGGT
GGGCGGATGGAGGGTTGTTCAGCAGCTCGTTGATGCGGCGGCACTGCTCG
TCGTCCTTGTCCGTCTTGGGCTCCTGCATCCAGAAGAACATGCGGCGTGT
CGATGACTTGAACTAAAGCACATAGACCCGGCCCGTCTTGCACTGATCGA
CGCGCTTGTACTCGAAGTCATCGGGGA
BO04815.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13349-PA | 1170 | CG13349-RA | 209..1167 | 977..19 | 4745 | 99.7 | Minus |
CG13349-PB | 1170 | CG13349-RB | 209..1167 | 977..19 | 4745 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn13-RF | 1390 | CG13349-RF | 329..1287 | 977..19 | 4765 | 99.8 | Minus |
Rpn13-RB | 1390 | CG13349-RB | 329..1287 | 977..19 | 4765 | 99.8 | Minus |
Rpn13-RA | 1377 | CG13349-RA | 316..1274 | 977..19 | 4765 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13958648..13959100 | 19..471 | 2265 | 100 | Plus |
2R | 25286936 | 2R | 13959568..13959880 | 665..977 | 1535 | 99.4 | Plus |
2R | 25286936 | 2R | 13959204..13959398 | 470..664 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:29:01 has no hits.
BO04815.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:35 Download gff for
BO04815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13349-PA | 210..1170 | 18..976 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:11 Download gff for
BO04815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13349-PB | 210..1170 | 18..976 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:41 Download gff for
BO04815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn13-RA | 317..1280 | 11..976 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:34:35 Download gff for
BO04815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn13-RA | 317..1280 | 11..976 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:34:35 Download gff for
BO04815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13958642..13959099 | 11..470 | 99 | <- | Plus |
2R | 13959205..13959398 | 471..664 | 100 | <- | Plus |
2R | 13959568..13959879 | 665..976 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:41 Download gff for
BO04815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9846147..9846604 | 11..470 | 99 | <- | Plus |
arm_2R | 9846710..9846903 | 471..664 | 100 | <- | Plus |
arm_2R | 9847073..9847384 | 665..976 | 99 | | Plus |
BO04815.5prime Sequence
889 bp (840 high quality bases) assembled on 2005-11-29
> BO04815.5prime
GAAGTTATCAGTCGACATGTTTGGAAGACAAAGTGGACTGGGTAGTTCCA
GCAACAGCAGCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACATGGTG
GGCAAGATGGTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGACCCA
GAGTGACGATGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCCGGCA
AGGTGGAGGACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAAGCGC
GTCGATCAGTGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGTCATC
GACACGCCGCATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAGGACG
ACGAGCAGTGCCGCCGCATCAACGAGCTGCTGAACAACCCTCCATCCGCC
CACCAGCGCGGCGGCGGCGGCAGCAACGACGGCGACCTCCAGTACATGCT
CAACAACATGTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTTGGCC
AGATGGGTGGTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGACGCCC
TCGTCGCGCAACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCTTGCA
GACGCCCGAAAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCGAAAT
CGGGCAGCAGCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGAAGGT
GCCGGCTCCTCCGTTGATGCGGATGCCCCCGGACGATCCCTGAATATTGA
CCTATCGACGGCCCTACCCGGCGCCGATGCCATCAATCAGATAATTGCCG
ATCCGGAGCATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCGGAGGAT
GTGGACGATGATCGCAAGCAGCAGATCAAGGACAATATC
BO04815.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13349-PA | 1170 | CG13349-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
CG13349-PB | 1170 | CG13349-RB | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn13-RF | 1390 | CG13349-RF | 120..993 | 16..889 | 4370 | 100 | Plus |
Rpn13-RB | 1390 | CG13349-RB | 120..993 | 16..889 | 4370 | 100 | Plus |
Rpn13-RA | 1377 | CG13349-RA | 107..980 | 16..889 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13959568..13960089 | 537..16 | 2610 | 100 | Minus |
2R | 25286936 | 2R | 13959204..13959398 | 732..538 | 975 | 100 | Minus |
2R | 25286936 | 2R | 13958942..13959100 | 889..731 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 14:10:23 has no hits.
BO04815.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:35 Download gff for
BO04815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13349-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:13 Download gff for
BO04815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13349-PB | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:53 Download gff for
BO04815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn13-RA | 107..980 | 16..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:24 Download gff for
BO04815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn13-RA | 107..980 | 16..889 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:24 Download gff for
BO04815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13958942..13959099 | 732..889 | 100 | <- | Minus |
2R | 13959205..13959398 | 538..731 | 100 | <- | Minus |
2R | 13959568..13960089 | 16..537 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:53 Download gff for
BO04815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9846447..9846604 | 732..889 | 100 | <- | Minus |
arm_2R | 9846710..9846903 | 538..731 | 100 | <- | Minus |
arm_2R | 9847073..9847594 | 16..537 | 100 | | Minus |
BO04815.complete Sequence
1201 bp (1201 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629872
> BO04815.complete
GAAGTTATCAGTCGACATGTTTGGAAGACAAAGTGGACTGGGTAGTTCCA
GCAACAGCAGCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACATGGTG
GGCAAGATGGTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGACCCA
GAGTGACGATGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCCGGCA
AGGTGGAGGACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAAGCGC
GTCGATCAGTGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGTCATC
GACACGCCGCATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAGGACG
ACGAGCAGTGCCGCCGCATCAACGAGCTGCTGAACAACCCTCCATCCGCC
CACCAGCGCGGCGGCGGCGGCAGCAACGACGGCGACCTCCAGTACATGCT
CAACAACATGTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTTGGCC
AGATGGGTGGTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGACGCCC
TCGTCGCGCAACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCTTGCA
GACGCCCGAAAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCGAAAT
CGGGCAGCAGCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGAAGGT
GCCGGCTCCTCCGTTGATGCGGATGCCCCCGGACGATCCCTGAATATTGA
CCTATCGACGGCCCTACCCGGCGCCGATGCCATCAATCAGATAATTGCCG
ATCCGGAGCATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCGGAGGAT
GTGGACGATGATCGCAAGCAGCAGATCAAGGACAATATCACCTCCCCGCA
GTTCCAGCAGGCTCTGGCCCAGTTCTCCAGTGCCCTGCAATCGGCCCAGC
TGGGACCTGTGATCAAGCAATTCGAGTTGTCCAACGAAGCAGTGGCCGCC
GCCTTCTCTGGCAATCTAGAGGATTTTGTGCGTGCTCTGGAGAAGAGTCT
GCCCCCCGGTGCCACCATGGGTGGCAAACCCTCCGCCAGCGAGAAGAAGG
CCAGCGATCCCGAAACCCCAACTTCAGTGGCCCGCGATGAGAACACAGAT
CCCGCTACCGAAAAACAGGAGGAGAAGCAAAAGGCAAGCTTTCTAGACCA
T
BO04815.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn13-RF | 1170 | CG13349-PF | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Rpn13-RB | 1170 | CG13349-PB | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Rpn13-RA | 1170 | CG13349-PA | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn13-RF | 1390 | CG13349-RF | 120..1287 | 16..1183 | 5840 | 100 | Plus |
Rpn13-RB | 1390 | CG13349-RB | 120..1287 | 16..1183 | 5840 | 100 | Plus |
Rpn13-RA | 1377 | CG13349-RA | 107..1274 | 16..1183 | 5840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13959568..13960089 | 537..16 | 2610 | 100 | Minus |
2R | 25286936 | 2R | 13958648..13959100 | 1183..731 | 2265 | 100 | Minus |
2R | 25286936 | 2R | 13959204..13959398 | 732..538 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:01:05 has no hits.
BO04815.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:09 Download gff for
BO04815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13349-RA | 1..1170 | 17..1184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:52 Download gff for
BO04815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13349-RA | 107..1280 | 16..1191 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:41 Download gff for
BO04815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn13-RA | 114..1274 | 23..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:09 Download gff for
BO04815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13349-RA | 107..1280 | 16..1191 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:05 Download gff for
BO04815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn13-RA | 114..1274 | 23..1185 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:05 Download gff for
BO04815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13958644..13959099 | 732..1185 | 99 | <- | Minus |
2R | 13959205..13959398 | 538..731 | 100 | <- | Minus |
2R | 13959568..13960082 | 23..537 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:41 Download gff for
BO04815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9846149..9846604 | 732..1185 | 99 | <- | Minus |
arm_2R | 9846710..9846903 | 538..731 | 100 | <- | Minus |
arm_2R | 9847073..9847587 | 23..537 | 100 | | Minus |
BO04815.pep Sequence
Translation from 16 to 1201
> BO04815.pep
MFGRQSGLGSSSNSSNLVEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGL
MHFCWKDRTSGKVEDDLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMF
FWMQEPKTDKDDEQCRRINELLNNPPSAHQRGGGGSNDGDLQYMLNNMSQ
QQLMQLFGGVGQMGGLSSLLGQMNSRTPSSRNTSSSGGGGASALQTPENV
SVPRTPSAPSKSGSSRSSSNVNSQVGEGAGSSVDADAPGRSLNIDLSTAL
PGADAINQIIADPEHVKTLIVHLPESEDVDDDRKQQIKDNITSPQFQQAL
AQFSSALQSAQLGPVIKQFELSNEAVAAAFSGNLEDFVRALEKSLPPGAT
MGGKPSASEKKASDPETPTSVARDENTDPATEKQEEKQKASFLDH
BO04815.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn13-PF | 389 | CG13349-PF | 1..389 | 1..389 | 2001 | 100 | Plus |
Rpn13-PB | 389 | CG13349-PB | 1..389 | 1..389 | 2001 | 100 | Plus |
Rpn13-PA | 389 | CG13349-PA | 1..389 | 1..389 | 2001 | 100 | Plus |
Rpn13-PE | 424 | CG13349-PE | 1..424 | 1..389 | 1955 | 91.7 | Plus |
Rpn13-PD | 424 | CG13349-PD | 1..424 | 1..389 | 1955 | 91.7 | Plus |