Clone Sequence Records
BO04817.3prime Sequence
881 bp (773 high quality bases) assembled on 2005-12-02
> BO04817.3prime
ATGGTCTAGAAAGCTTGCTTCCTGATTCAGGTTCTTGATCACGTAATTAA
CAATGAGGGCAAAAATTGCAAAGCAGATAATGATCACCAGGTTTGAATAG
ACGGACTGCCAGTTTAGATAGGAGTTCCGTGCACTATTCTGGACCGCCGC
TCCTCCGCCGCTGGCCAAATCCGCCTGACCCGCCGCCCCGCCATCGATTG
CGTCCGCTGCATTCAGTGGATTGGCCAAGCCGCCCACCGCCAGATTGCCA
TCCGCAGATGCCAGGCTCGCTCCGTTGGCCAGTCCGTTGGAACGCTTTAC
TCCATTGGCAGCGGGTCCGTCCACAGCAGCTGCCGCCTGTGTTCCTCGCA
GCCGCTGCTTGATCTCTTCGACTATCTCCGGAAACAGCTCACAGAAGTTG
GTGTTGCGCAGGTTAAATGCTAGTGATTTTTGAGCAAACATTTGCTTGTC
ATAGTTCGATGATTCGATGGATCCGAGTGTGGGTGTGCTCTCCAGCATGA
AGCTCAGCAGTCCAGTGAGAATGGTGCCTACGCACCAAGTCGGGTTCCAA
GTGTCCGGATGAAAATCTGATATACTCAAACACAGTCTGGTGTTGGTCTT
GAAGCGACCGTTCGGCGTCAGCATGTAGATGGATGGCGGCTTGAATGGGA
ACTCGCGCGGAAAGAGCAGGGTGCCGTGGTAGTAGCCGCCGTAGTAGGGC
GAGTCCTCCGGCCCCTTGACGCAGTAGTGCCACTCGAGGATGTTGTTGGG
CAGCGGCTCGGCGGTTATGTACGGCAGGGGATCCCGCTTGAGGCGCATAT
AGTCCTGCTTCATGCGCGACACAGCAGTGGGTTGCTTCCGGCCGCCGGAC
GTCGACGACGAGGACATGTCGACTGATAACT
BO04817.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-PA | 852 | CG5823-RA | 1..849 | 867..19 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-RB | 1789 | CG5823-RB | 542..1391 | 868..19 | 4250 | 100 | Minus |
| CG5823-RA | 1850 | CG5823-RA | 603..1452 | 868..19 | 4250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17532723..17533200 | 19..496 | 2390 | 100 | Plus |
| 3R | 32079331 | 3R | 17533623..17533924 | 567..868 | 1510 | 100 | Plus |
| 3R | 32079331 | 3R | 17533260..17533334 | 496..570 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:11:53 has no hits.
BO04817.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:36 Download gff for
BO04817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-PA | 1..852 | 18..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:14 Download gff for
BO04817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-PA | 1..852 | 18..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:15 Download gff for
BO04817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1452 | 19..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:44 Download gff for
BO04817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1452 | 19..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:44 Download gff for
BO04817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17532723..17533199 | 19..495 | 100 | <- | Plus |
| 3R | 17533260..17533330 | 496..566 | 100 | <- | Plus |
| 3R | 17533623..17533927 | 567..875 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:15 Download gff for
BO04817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13358445..13358921 | 19..495 | 100 | <- | Plus |
| arm_3R | 13358982..13359052 | 496..566 | 100 | <- | Plus |
| arm_3R | 13359345..13359649 | 567..875 | 98 | | Plus |
BO04817.5prime Sequence
813 bp (812 high quality bases) assembled on 2005-11-29
> BO04817.5prime
GAAGTTATCAGTCGACATGTCCTCGTCGTCGACGTCCGGCGGCCGGAAGC
AACCCACTGCTGTGTCGCGCATGAAGCAGGACTATATGCGCCTCAAGCGG
GATCCCCTGCCGTACATAACCGCCGAGCCGCTGCCCAACAACATCCTCGA
GTGGCACTACTGCGTCAAGGGGCCGGAGGACTCGCCCTACTACGGCGGCT
ACTACCACGGCACCCTGCTCTTTCCGCGCGAGTTCCCATTCAAGCCGCCA
TCCATCTACATGCTGACGCCGAACGGTCGCTTCAAGACCAACACCAGACT
GTGTTTGAGTATATCAGATTTTCATCCGGACACTTGGAACCCGACTTGGT
GCGTAGGCACCATTCTCACTGGACTGCTGAGCTTCATGCTGGAGAGCACA
CCCACACTCGGATCCATCGAATCATCGAACTATGACAAGCAAATGTTTGC
TCAAAAATCACTAGCATTTAACCTGCGCAACACCAACTTCTGTGAGCTGT
TTCCGGAGATAGTCGAAGAGATCAAGCAGCGGCTGCGAGGAACACAGGCG
GCAGCTGCTGTGGACGGACCCGCTGCCAATGGAGTAAAGCGTTCCAACGG
ACTGGCCAACGGAGCGAGCCTGGCATCTGCGGATGGCAATCTGGCGGTGG
GCGGCTTGGCCAATCCACTGAATGCAGCGGACGCAATCGATGGCGGGGCG
GCGGGTCAGGCGGATTTGGCCAGCGGCGGAGGAGCGGCGGTCCAGAATAG
TGCACGGAACTCCTATCTAAACTGGCAGTCCGTCTATTCAAACCTGGTGA
TCATTATCTGCTT
BO04817.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-PA | 852 | CG5823-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:40:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-RB | 1789 | CG5823-RB | 542..1339 | 16..813 | 3990 | 100 | Plus |
| CG5823-RA | 1850 | CG5823-RA | 603..1400 | 16..813 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17532775..17533200 | 813..388 | 2130 | 100 | Minus |
| 3R | 32079331 | 3R | 17533623..17533924 | 317..16 | 1510 | 100 | Minus |
| 3R | 32079331 | 3R | 17533260..17533334 | 388..314 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:40:41 has no hits.
BO04817.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:37 Download gff for
BO04817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:15 Download gff for
BO04817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:37 Download gff for
BO04817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1400 | 9..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:26 Download gff for
BO04817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1400 | 9..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:26 Download gff for
BO04817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17532775..17533199 | 389..813 | 100 | <- | Minus |
| 3R | 17533260..17533330 | 318..388 | 100 | <- | Minus |
| 3R | 17533623..17533927 | 9..317 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:37 Download gff for
BO04817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13358497..13358921 | 389..813 | 100 | <- | Minus |
| arm_3R | 13358982..13359052 | 318..388 | 100 | <- | Minus |
| arm_3R | 13359345..13359649 | 9..317 | 98 | | Minus |
BO04817.complete Sequence
883 bp (883 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629873
> BO04817.complete
GAAGTTATCAGTCGACATGTCCTCGTCGTCGACGTCCGGCGGCCGGAAGC
AACCCACTGCTGTGTCGCGCATGAAGCAGGACTATATGCGCCTCAAGCGG
GATCCCCTGCCGTACATAACCGCCGAGCCGCTGCCCAACAACATCCTCGA
GTGGCACTACTGCGTCAAGGGGCCGGAGGACTCGCCCTACTACGGCGGCT
ACTACCACGGCACCCTGCTCTTTCCGCGCGAGTTCCCATTCAAGCCGCCA
TCCATCTACATGCTGACGCCGAACGGTCGCTTCAAGACCAACACCAGACT
GTGTTTGAGTATATCAGATTTTCATCCGGACACTTGGAACCCGACTTGGT
GCGTAGGCACCATTCTCACTGGACTGCTGAGCTTCATGCTGGAGAGCACA
CCCACACTCGGATCCATCGAATCATCGAACTATGACAAGCAAATGTTTGC
TCAAAAATCACTAGCATTTAACCTGCGCAACACCAACTTCTGTGAGCTGT
TTCCGGAGATAGTCGAAGAGATCAAGCAGCGGCTGCGAGGAACACAGGCG
GCAGCTGCTGTGGACGGACCCGCTGCCAATGGAGTAAAGCGTTCCAACGG
ACTGGCCAACGGAGCGAGCCTGGCATCTGCGGATGGCAATCTGGCGGTGG
GCGGCTTGGCCAATCCACTGAATGCAGCGGACGCAATCGATGGCGGGGCG
GCGGGTCAGGCGGATTTGGCCAGCGGCGGAGGAGCGGCGGTCCAGAATAG
TGCACGGAACTCCTATCTAAACTGGCAGTCCGTCTATTCAAACCTGGTGA
TCATTATCTGCTTTGCAATTTTTGCCCTCATTGTTAATTACGTGATCAAG
AACCTGAATCAGGAAGCAAGCTTTCTAGACCAT
BO04817.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-RB | 852 | CG5823-PB | 1..849 | 17..865 | 4245 | 100 | Plus |
| CG5823-RA | 852 | CG5823-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-RB | 1789 | CG5823-RB | 542..1391 | 16..865 | 4250 | 100 | Plus |
| CG5823-RA | 1850 | CG5823-RA | 603..1452 | 16..865 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17532723..17533200 | 865..388 | 2390 | 100 | Minus |
| 3R | 32079331 | 3R | 17533623..17533924 | 317..16 | 1510 | 100 | Minus |
| 3R | 32079331 | 3R | 17533260..17533334 | 388..314 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:43:45 has no hits.
BO04817.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:10 Download gff for
BO04817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 1..852 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:54 Download gff for
BO04817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 585..1440 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:19 Download gff for
BO04817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 604..1452 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:11 Download gff for
BO04817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 585..1440 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:36 Download gff for
BO04817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 604..1452 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:36 Download gff for
BO04817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17532721..17533199 | 389..867 | 99 | <- | Minus |
| 3R | 17533260..17533330 | 318..388 | 100 | <- | Minus |
| 3R | 17533623..17533923 | 17..317 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:19 Download gff for
BO04817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13358443..13358921 | 389..867 | 99 | <- | Minus |
| arm_3R | 13358982..13359052 | 318..388 | 100 | <- | Minus |
| arm_3R | 13359345..13359645 | 17..317 | 100 | | Minus |
BO04817.pep Sequence
Translation from 16 to 883
> BO04817.pep
MSSSSTSGGRKQPTAVSRMKQDYMRLKRDPLPYITAEPLPNNILEWHYCV
KGPEDSPYYGGYYHGTLLFPREFPFKPPSIYMLTPNGRFKTNTRLCLSIS
DFHPDTWNPTWCVGTILTGLLSFMLESTPTLGSIESSNYDKQMFAQKSLA
FNLRNTNFCELFPEIVEEIKQRLRGTQAAAAVDGPAANGVKRSNGLANGA
SLASADGNLAVGGLANPLNAADAIDGGAAGQADLASGGGAAVQNSARNSY
LNWQSVYSNLVIIICFAIFALIVNYVIKNLNQEASFLDH
BO04817.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-PB | 283 | CG5823-PB | 1..283 | 1..283 | 1490 | 100 | Plus |
| CG5823-PA | 283 | CG5823-PA | 1..283 | 1..283 | 1490 | 100 | Plus |
| eff-PC | 147 | CG7425-PC | 2..115 | 15..129 | 178 | 31.1 | Plus |
| eff-PB | 147 | CG7425-PB | 2..115 | 15..129 | 178 | 31.1 | Plus |
| eff-PA | 147 | CG7425-PA | 2..115 | 15..129 | 178 | 31.1 | Plus |
