Clone BO04820 Report

Search the DGRC for BO04820

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptVha44-RA
Protein status:BO04820.pep: validated full length
Sequenced Size:1198

Clone Sequence Records

BO04820.3prime Sequence

949 bp (863 high quality bases) assembled on 2005-12-02

> BO04820.3prime
ATGGTCTAGAAAGCTTGCGACCTTGGCCTGCTCCACCATATCGATGTTGA
CCTTGTAGAACACATAGGGGAAGTATTCGGACTGGCCAAAGCCCAGGCCG
GGGATGTCTACGTTATCAGCACTGCTGACAGCACCGCCGGCGGAGGCGCC
ATCCAAGTGACCATACAGCTGGTTGAGCACATCGCGCAGACGCTTCACGC
TCTTCTTGTTGGGCTCGATCAAGATGGCCTGGAAGTTAACAGGCAGTCCG
TATCTCAGCACGGATTCCACAAACACGCGCAGCGCCTTGACGTGGATGAG
GGCGCAGAAGGCCTCGCTGAAGTTCACCTTCAGCCAACGAACCAAAGGAC
CAAACTGCTTCTTCTTGTCCGTCATCAGCTTGGTCATCTCGTTCTTGCCG
GCAGCCAGCTCCTCCTCGTTGTACACAAAGTCGCGCACAATGAACTTGCG
CTCGCGGGCATGCAGCTTAAACTCCTCGGCAACCTTCTTGAAGAGCGTCA
CGTTGAACAGGCAGTAGTCGGCGTCCTCCTGGATGAGCTGCGACGAGCGG
GGCACGATCATGTCGGTGATCTTCTCGTAGTTGGTCAGCCAGTCATTAGC
CATGACCTTGGGTACAATGACCAGCAGGGTGGTCAGGTACTCCGAGTCCA
GGATGAAGTGCTCCTTCTTGACCAAATCAGCCAGATTCCTGGTCAGCAGA
CTGCCAGTCTTCTTCTTTTCCAGATTCTGCAGATTTCCCTTGAGGTTGTT
ATAGGCCTGCGACTTGGTCTTCAAATCGCCATCGATCTGACCGATCTGCT
TGGAGATAATGTCGGCGATGTTGCGCAGCGACTGCTTGATCGGATACTTG
GCCATGTCCCATTGGAAGCGGGTCAAGTACTGGGGTAGTTCGGTGGTGTT
GGCCATCAGGGTCTCGTGCAGCTTGTCCCGCTGATCCTCGAGCACCTCG

BO04820.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8048-PA 1167 Vha44-RA 234..1164 949..19 4605 99.7 Minus
CG8048-PB 1167 Vha44-RB 234..1164 949..19 4605 99.7 Minus
CG8048-PD 2145 Vha44-RD 1267..2142 894..19 4380 100 Minus
CG8048-PC 1329 Vha44-RC 452..1326 893..19 4375 100 Minus
CG8048-PD 2145 Vha44-RD 234..286 949..897 240 98.1 Minus
CG8048-PC 1329 Vha44-RC 234..286 949..897 240 98.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Vha44-RB 1431 CG8048-RB 445..1375 949..19 4625 99.8 Minus
Vha44-RA 1470 CG8048-RA 390..1320 949..19 4625 99.8 Minus
Vha44-RC 2693 CG8048-RC 663..1537 893..19 4375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16326492..16326748 351..607 1285 100 Plus
2R 25286936 2R 16326974..16327160 707..893 935 100 Plus
2R 25286936 2R 16326135..16326275 115..255 705 100 Plus
2R 25286936 2R 16326810..16326909 607..706 500 100 Plus
2R 25286936 2R 16326333..16326430 254..351 490 100 Plus
2R 25286936 2R 16325969..16326064 19..114 480 100 Plus
2R 25286936 2R 16333037..16333089 897..949 250 98.1 Plus
Blast to na_te.dros performed on 2015-02-04 19:29:19 has no hits.

BO04820.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:41 Download gff for BO04820.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha44-PA 234..1167 15..949 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:20 Download gff for BO04820.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8048-PB 234..1167 15..949 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:44 Download gff for BO04820.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 390..1324 14..949 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:34:46 Download gff for BO04820.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 390..1324 14..949 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:34:46 Download gff for BO04820.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16325965..16326064 14..114 98 <- Plus
2R 16326135..16326273 115..253 100 <- Plus
2R 16326333..16326430 254..351 100 <- Plus
2R 16326493..16326748 352..607 100 <- Plus
2R 16326811..16326909 608..706 100 <- Plus
2R 16326974..16327160 707..893 100 <- Plus
2R 16333034..16333089 894..949 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:44 Download gff for BO04820.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12213470..12213569 14..114 98 <- Plus
arm_2R 12213640..12213778 115..253 100 <- Plus
arm_2R 12213838..12213935 254..351 100 <- Plus
arm_2R 12213998..12214253 352..607 100 <- Plus
arm_2R 12214316..12214414 608..706 100 <- Plus
arm_2R 12214479..12214665 707..893 100 <- Plus
arm_2R 12220539..12220594 894..949 96   Plus

BO04820.5prime Sequence

927 bp (830 high quality bases) assembled on 2005-11-29

> BO04820.5prime
GAAGTTATCAGTCGACATGATGTCGGAATACTGGATTATCTCGGCCCCTG
GCGACAAGACCTGCCAGCAGACGTACGACACGATGAACAATCTGACCAGC
AAGCAACACAACCTGTGCAATAACTACAAGTTCCATATTCCAGATCTTAA
GGTGGGCACCCTCGACCAACTGGTGGGCCTCTCCGACGATCTGGGCAAAC
TGGACACCTATGTGGAGCAGATCACCCGCAAGGTGGCCAACTATCTGGGC
GAGGTGCTCGAGGATCAGCGGGACAAGCTGCACGAGAACCTGATGGCCAA
CAACACCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCA
AGTATCCGATCAAGCAGTCGCTGCGCAACATCGCCGACATTATCTCCAAG
CAGATCGGTCAGATCGATGGCGATTTGAAGACCAAGTCGCAGGCCTATAA
CAACCTCAAGGGAAATCTGCAGAATCTGGAAAAGAAGAAGACTGGCAGTC
TGCTGACCAGGAATCTGGCTGATTTGGTCAAGAAGGAGCACTTCATCCTG
GACTCGGAGTACCTGACCACCCTGCTGGTCATTGTACCCAAGGTCATGGC
TAATGACTGGCTGACCAACTACGAGAAGATCACCGACATGATCGTGCCCC
GCTCGTCGCAGCTCATCCAGGAGGACGCCGACTACTGCCTGTTCAACGTG
ACGCTCTTCAAGAAGGTTGCCGAGGAGTTTAAGCTGCATGCCCGCGAGCG
CAAGTTCATTGTGCGCGACTTTGTGTACAACGAGGAGGAGCTGGCTGCCG
GCAAGAACGAGATGACCAAGCTGATGACGGACAAGAAGAAGCAGTTTGGT
CCTTTTGGTCGTTGGCTGAAGGTGAACTTCAGCGAGGCCTTCTGCGCCCT
CATCCACGTCAAGGCGCTGCGCGTGTT

BO04820.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8048-PA 1167 Vha44-RA 1..911 17..927 4505 99.7 Plus
CG8048-PB 1167 Vha44-RB 1..911 17..927 4505 99.7 Plus
CG8048-PD 2145 Vha44-RD 1267..1889 305..927 3065 99.6 Plus
CG8048-PC 1329 Vha44-RC 452..1073 306..927 3060 99.6 Plus
CG8048-PD 2145 Vha44-RD 1..289 17..305 1445 100 Plus
CG8048-PC 1329 Vha44-RC 1..289 17..305 1445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
Vha44-RB 1431 CG8048-RB 212..1122 17..927 4525 99.8 Plus
Vha44-RA 1470 CG8048-RA 157..1067 17..927 4525 99.8 Plus
Vha44-RC 2693 CG8048-RC 663..1284 306..927 3080 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16326492..16326748 848..592 1285 100 Minus
2R 25286936 2R 16326974..16327160 492..306 935 100 Minus
2R 25286936 2R 16333034..16333190 305..149 785 100 Minus
2R 25286936 2R 16333276..16333412 153..17 685 100 Minus
2R 25286936 2R 16326810..16326909 592..493 500 100 Minus
2R 25286936 2R 16326351..16326430 927..848 370 97.5 Minus
Blast to na_te.dros performed on 2015-02-12 10:10:30 has no hits.

BO04820.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:42 Download gff for BO04820.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha44-PA 1..911 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:21 Download gff for BO04820.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8048-PB 1..911 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:54 Download gff for BO04820.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 150..1067 9..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:58 Download gff for BO04820.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 150..1067 9..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:58 Download gff for BO04820.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16326351..16326430 848..927 97 <- Minus
2R 16326493..16326748 592..847 100 <- Minus
2R 16326811..16326909 493..591 100 <- Minus
2R 16326974..16327160 306..492 100 <- Minus
2R 16333034..16333187 152..305 100 <- Minus
2R 16333278..16333419 9..151 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:54 Download gff for BO04820.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12213856..12213935 848..927 97 <- Minus
arm_2R 12213998..12214253 592..847 100 <- Minus
arm_2R 12214316..12214414 493..591 100 <- Minus
arm_2R 12214479..12214665 306..492 100 <- Minus
arm_2R 12220539..12220692 152..305 100 <- Minus
arm_2R 12220783..12220924 9..151 97   Minus

BO04820.complete Sequence

1198 bp (1198 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629875

> BO04820.complete
GAAGTTATCAGTCGACATGATGTCGGAATACTGGATTATCTCGGCCCCTG
GCGACAAGACCTGCCAGCAGACGTACGACACGATGAACAATCTGACCAGC
AAGCAACACAACCTGTGCAATAACTACAAGTTCCATATTCCAGATCTTAA
GGTGGGCACCCTCGACCAACTGGTGGGCCTCTCCGACGATCTGGGCAAAC
TGGACACCTATGTGGAGCAGATCACCCGCAAGGTGGCCAACTATCTGGGC
GAGGTGCTCGAGGATCAGCGGGACAAGCTGCACGAGAACCTGATGGCCAA
CAACACCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCA
AGTATCCGATCAAGCAGTCGCTGCGCAACATCGCCGACATTATCTCCAAG
CAGATCGGTCAGATCGATGGCGATTTGAAGACCAAGTCGCAGGCCTATAA
CAACCTCAAGGGAAATCTGCAGAATCTGGAAAAGAAGAAGACTGGCAGTC
TGCTGACCAGGAATCTGGCTGATTTGGTCAAGAAGGAGCACTTCATCCTG
GACTCGGAGTACCTGACCACCCTGCTGGTCATTGTACCCAAGGTCATGGC
TAATGACTGGCTGACCAACTACGAGAAGATCACCGACATGATCGTGCCCC
GCTCGTCGCAGCTCATCCAGGAGGACGCCGACTACTGCCTGTTCAACGTG
ACGCTCTTCAAGAAGGTTGCCGAGGAGTTTAAGCTGCATGCCCGCGAGCG
CAAGTTCATTGTGCGCGACTTTGTGTACAACGAGGAGGAGCTGGCTGCCG
GCAAGAACGAGATGACCAAGCTGATGACGGACAAGAAGAAGCAGTTTGGT
CCTTTGGTTCGTTGGCTGAAGGTGAACTTCAGCGAGGCCTTCTGCGCCCT
CATCCACGTCAAGGCGCTGCGCGTGTTTGTGGAATCCGTGCTGAGATACG
GACTGCCTGTTAACTTCCAGGCCATCTTGATCGAGCCCAACAAGAAGAGC
GTGAAGCGTCTGCGCGATGTGCTCAACCAGCTGTATGGTCACTTGGATGG
CGCCTCCGCCGGCGGTGCTGTCAGCAGTGCTGATAACGTAGACATCCCCG
GCCTGGGCTTTGGCCAGTCCGAATACTTCCCCTATGTGTTCTACAAGGTC
AACATCGATATGGTGGAGCAGGCCAAGGTCGCAAGCTTTCTAGACCAT

BO04820.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
Vha44-RB 1167 CG8048-PB 1..1164 17..1180 5820 100 Plus
Vha44-RA 1167 CG8048-PA 1..1164 17..1180 5820 100 Plus
Vha44-RC 1329 CG8048-PC 452..1326 306..1180 4375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
Vha44-RB 1431 CG8048-RB 212..1375 17..1180 5820 100 Plus
Vha44-RA 1470 CG8048-RA 157..1320 17..1180 5820 100 Plus
Vha44-RC 2693 CG8048-RC 663..1537 306..1180 4375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16326492..16326748 848..592 1285 100 Minus
2R 25286936 2R 16326974..16327160 492..306 935 100 Minus
2R 25286936 2R 16333034..16333190 305..149 785 100 Minus
2R 25286936 2R 16326135..16326275 1084..944 705 100 Minus
2R 25286936 2R 16333276..16333412 153..17 685 100 Minus
2R 25286936 2R 16326810..16326909 592..493 500 100 Minus
2R 25286936 2R 16326333..16326430 945..848 490 100 Minus
2R 25286936 2R 16325969..16326064 1180..1085 480 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:26:34 has no hits.

BO04820.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:13 Download gff for BO04820.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RB 1..1167 17..1184 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:59 Download gff for BO04820.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RB 196..1375 5..1185 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:15 Download gff for BO04820.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 157..1320 17..1182 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:13 Download gff for BO04820.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RB 196..1375 5..1185 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:38 Download gff for BO04820.complete
Subject Subject Range Query Range Percent Splice Strand
Vha44-RA 157..1320 17..1182 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:38 Download gff for BO04820.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16326493..16326748 592..847 100 <- Minus
2R 16326811..16326909 493..591 100 <- Minus
2R 16326974..16327160 306..492 100 <- Minus
2R 16333034..16333187 152..305 100 <- Minus
2R 16333278..16333412 17..151 100   Minus
2R 16325967..16326064 1085..1182 97 <- Minus
2R 16326135..16326273 946..1084 100 <- Minus
2R 16326333..16326430 848..945 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:15 Download gff for BO04820.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12213472..12213569 1085..1182 97 <- Minus
arm_2R 12213640..12213778 946..1084 100 <- Minus
arm_2R 12213838..12213935 848..945 100 <- Minus
arm_2R 12213998..12214253 592..847 100 <- Minus
arm_2R 12214316..12214414 493..591 100 <- Minus
arm_2R 12214479..12214665 306..492 100 <- Minus
arm_2R 12220539..12220692 152..305 100 <- Minus
arm_2R 12220783..12220917 17..151 100   Minus

BO04820.pep Sequence

Translation from 16 to 1198

> BO04820.pep
MMSEYWIISAPGDKTCQQTYDTMNNLTSKQHNLCNNYKFHIPDLKVGTLD
QLVGLSDDLGKLDTYVEQITRKVANYLGEVLEDQRDKLHENLMANNTELP
QYLTRFQWDMAKYPIKQSLRNIADIISKQIGQIDGDLKTKSQAYNNLKGN
LQNLEKKKTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLT
NYEKITDMIVPRSSQLIQEDADYCLFNVTLFKKVAEEFKLHARERKFIVR
DFVYNEEELAAGKNEMTKLMTDKKKQFGPLVRWLKVNFSEAFCALIHVKA
LRVFVESVLRYGLPVNFQAILIEPNKKSVKRLRDVLNQLYGHLDGASAGG
AVSSADNVDIPGLGFGQSEYFPYVFYKVNIDMVEQAKVASFLDH

BO04820.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
Vha44-PB 388 CG8048-PB 1..388 1..388 2008 100 Plus
Vha44-PA 388 CG8048-PA 1..388 1..388 2008 100 Plus
Vha44-PC 442 CG8048-PC 1..442 1..388 1895 86.2 Plus
Vha44-PF 836 CG8048-PF 546..836 98..388 1490 100 Plus
Vha44-PE 836 CG8048-PE 546..836 98..388 1490 100 Plus
Vha44-PF 836 CG8048-PF 1..100 1..100 516 97 Plus