Clone Sequence Records
BO04820.3prime Sequence
949 bp (863 high quality bases) assembled on 2005-12-02
> BO04820.3prime
ATGGTCTAGAAAGCTTGCGACCTTGGCCTGCTCCACCATATCGATGTTGA
CCTTGTAGAACACATAGGGGAAGTATTCGGACTGGCCAAAGCCCAGGCCG
GGGATGTCTACGTTATCAGCACTGCTGACAGCACCGCCGGCGGAGGCGCC
ATCCAAGTGACCATACAGCTGGTTGAGCACATCGCGCAGACGCTTCACGC
TCTTCTTGTTGGGCTCGATCAAGATGGCCTGGAAGTTAACAGGCAGTCCG
TATCTCAGCACGGATTCCACAAACACGCGCAGCGCCTTGACGTGGATGAG
GGCGCAGAAGGCCTCGCTGAAGTTCACCTTCAGCCAACGAACCAAAGGAC
CAAACTGCTTCTTCTTGTCCGTCATCAGCTTGGTCATCTCGTTCTTGCCG
GCAGCCAGCTCCTCCTCGTTGTACACAAAGTCGCGCACAATGAACTTGCG
CTCGCGGGCATGCAGCTTAAACTCCTCGGCAACCTTCTTGAAGAGCGTCA
CGTTGAACAGGCAGTAGTCGGCGTCCTCCTGGATGAGCTGCGACGAGCGG
GGCACGATCATGTCGGTGATCTTCTCGTAGTTGGTCAGCCAGTCATTAGC
CATGACCTTGGGTACAATGACCAGCAGGGTGGTCAGGTACTCCGAGTCCA
GGATGAAGTGCTCCTTCTTGACCAAATCAGCCAGATTCCTGGTCAGCAGA
CTGCCAGTCTTCTTCTTTTCCAGATTCTGCAGATTTCCCTTGAGGTTGTT
ATAGGCCTGCGACTTGGTCTTCAAATCGCCATCGATCTGACCGATCTGCT
TGGAGATAATGTCGGCGATGTTGCGCAGCGACTGCTTGATCGGATACTTG
GCCATGTCCCATTGGAAGCGGGTCAAGTACTGGGGTAGTTCGGTGGTGTT
GGCCATCAGGGTCTCGTGCAGCTTGTCCCGCTGATCCTCGAGCACCTCG
BO04820.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8048-PA | 1167 | Vha44-RA | 234..1164 | 949..19 | 4605 | 99.7 | Minus |
CG8048-PB | 1167 | Vha44-RB | 234..1164 | 949..19 | 4605 | 99.7 | Minus |
CG8048-PD | 2145 | Vha44-RD | 1267..2142 | 894..19 | 4380 | 100 | Minus |
CG8048-PC | 1329 | Vha44-RC | 452..1326 | 893..19 | 4375 | 100 | Minus |
CG8048-PD | 2145 | Vha44-RD | 234..286 | 949..897 | 240 | 98.1 | Minus |
CG8048-PC | 1329 | Vha44-RC | 234..286 | 949..897 | 240 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:29:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha44-RB | 1431 | CG8048-RB | 445..1375 | 949..19 | 4625 | 99.8 | Minus |
Vha44-RA | 1470 | CG8048-RA | 390..1320 | 949..19 | 4625 | 99.8 | Minus |
Vha44-RC | 2693 | CG8048-RC | 663..1537 | 893..19 | 4375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:29:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16326492..16326748 | 351..607 | 1285 | 100 | Plus |
2R | 25286936 | 2R | 16326974..16327160 | 707..893 | 935 | 100 | Plus |
2R | 25286936 | 2R | 16326135..16326275 | 115..255 | 705 | 100 | Plus |
2R | 25286936 | 2R | 16326810..16326909 | 607..706 | 500 | 100 | Plus |
2R | 25286936 | 2R | 16326333..16326430 | 254..351 | 490 | 100 | Plus |
2R | 25286936 | 2R | 16325969..16326064 | 19..114 | 480 | 100 | Plus |
2R | 25286936 | 2R | 16333037..16333089 | 897..949 | 250 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:29:19 has no hits.
BO04820.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:41 Download gff for
BO04820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-PA | 234..1167 | 15..949 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:20 Download gff for
BO04820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8048-PB | 234..1167 | 15..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:44 Download gff for
BO04820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RA | 390..1324 | 14..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:34:46 Download gff for
BO04820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RA | 390..1324 | 14..949 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:34:46 Download gff for
BO04820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16325965..16326064 | 14..114 | 98 | <- | Plus |
2R | 16326135..16326273 | 115..253 | 100 | <- | Plus |
2R | 16326333..16326430 | 254..351 | 100 | <- | Plus |
2R | 16326493..16326748 | 352..607 | 100 | <- | Plus |
2R | 16326811..16326909 | 608..706 | 100 | <- | Plus |
2R | 16326974..16327160 | 707..893 | 100 | <- | Plus |
2R | 16333034..16333089 | 894..949 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:44 Download gff for
BO04820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12213470..12213569 | 14..114 | 98 | <- | Plus |
arm_2R | 12213640..12213778 | 115..253 | 100 | <- | Plus |
arm_2R | 12213838..12213935 | 254..351 | 100 | <- | Plus |
arm_2R | 12213998..12214253 | 352..607 | 100 | <- | Plus |
arm_2R | 12214316..12214414 | 608..706 | 100 | <- | Plus |
arm_2R | 12214479..12214665 | 707..893 | 100 | <- | Plus |
arm_2R | 12220539..12220594 | 894..949 | 96 | | Plus |
BO04820.5prime Sequence
927 bp (830 high quality bases) assembled on 2005-11-29
> BO04820.5prime
GAAGTTATCAGTCGACATGATGTCGGAATACTGGATTATCTCGGCCCCTG
GCGACAAGACCTGCCAGCAGACGTACGACACGATGAACAATCTGACCAGC
AAGCAACACAACCTGTGCAATAACTACAAGTTCCATATTCCAGATCTTAA
GGTGGGCACCCTCGACCAACTGGTGGGCCTCTCCGACGATCTGGGCAAAC
TGGACACCTATGTGGAGCAGATCACCCGCAAGGTGGCCAACTATCTGGGC
GAGGTGCTCGAGGATCAGCGGGACAAGCTGCACGAGAACCTGATGGCCAA
CAACACCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCA
AGTATCCGATCAAGCAGTCGCTGCGCAACATCGCCGACATTATCTCCAAG
CAGATCGGTCAGATCGATGGCGATTTGAAGACCAAGTCGCAGGCCTATAA
CAACCTCAAGGGAAATCTGCAGAATCTGGAAAAGAAGAAGACTGGCAGTC
TGCTGACCAGGAATCTGGCTGATTTGGTCAAGAAGGAGCACTTCATCCTG
GACTCGGAGTACCTGACCACCCTGCTGGTCATTGTACCCAAGGTCATGGC
TAATGACTGGCTGACCAACTACGAGAAGATCACCGACATGATCGTGCCCC
GCTCGTCGCAGCTCATCCAGGAGGACGCCGACTACTGCCTGTTCAACGTG
ACGCTCTTCAAGAAGGTTGCCGAGGAGTTTAAGCTGCATGCCCGCGAGCG
CAAGTTCATTGTGCGCGACTTTGTGTACAACGAGGAGGAGCTGGCTGCCG
GCAAGAACGAGATGACCAAGCTGATGACGGACAAGAAGAAGCAGTTTGGT
CCTTTTGGTCGTTGGCTGAAGGTGAACTTCAGCGAGGCCTTCTGCGCCCT
CATCCACGTCAAGGCGCTGCGCGTGTT
BO04820.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8048-PA | 1167 | Vha44-RA | 1..911 | 17..927 | 4505 | 99.7 | Plus |
CG8048-PB | 1167 | Vha44-RB | 1..911 | 17..927 | 4505 | 99.7 | Plus |
CG8048-PD | 2145 | Vha44-RD | 1267..1889 | 305..927 | 3065 | 99.6 | Plus |
CG8048-PC | 1329 | Vha44-RC | 452..1073 | 306..927 | 3060 | 99.6 | Plus |
CG8048-PD | 2145 | Vha44-RD | 1..289 | 17..305 | 1445 | 100 | Plus |
CG8048-PC | 1329 | Vha44-RC | 1..289 | 17..305 | 1445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha44-RB | 1431 | CG8048-RB | 212..1122 | 17..927 | 4525 | 99.8 | Plus |
Vha44-RA | 1470 | CG8048-RA | 157..1067 | 17..927 | 4525 | 99.8 | Plus |
Vha44-RC | 2693 | CG8048-RC | 663..1284 | 306..927 | 3080 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16326492..16326748 | 848..592 | 1285 | 100 | Minus |
2R | 25286936 | 2R | 16326974..16327160 | 492..306 | 935 | 100 | Minus |
2R | 25286936 | 2R | 16333034..16333190 | 305..149 | 785 | 100 | Minus |
2R | 25286936 | 2R | 16333276..16333412 | 153..17 | 685 | 100 | Minus |
2R | 25286936 | 2R | 16326810..16326909 | 592..493 | 500 | 100 | Minus |
2R | 25286936 | 2R | 16326351..16326430 | 927..848 | 370 | 97.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:10:30 has no hits.
BO04820.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:42 Download gff for
BO04820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:21 Download gff for
BO04820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8048-PB | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:54 Download gff for
BO04820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RA | 150..1067 | 9..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:58 Download gff for
BO04820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RA | 150..1067 | 9..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:58 Download gff for
BO04820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16326351..16326430 | 848..927 | 97 | <- | Minus |
2R | 16326493..16326748 | 592..847 | 100 | <- | Minus |
2R | 16326811..16326909 | 493..591 | 100 | <- | Minus |
2R | 16326974..16327160 | 306..492 | 100 | <- | Minus |
2R | 16333034..16333187 | 152..305 | 100 | <- | Minus |
2R | 16333278..16333419 | 9..151 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:54 Download gff for
BO04820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12213856..12213935 | 848..927 | 97 | <- | Minus |
arm_2R | 12213998..12214253 | 592..847 | 100 | <- | Minus |
arm_2R | 12214316..12214414 | 493..591 | 100 | <- | Minus |
arm_2R | 12214479..12214665 | 306..492 | 100 | <- | Minus |
arm_2R | 12220539..12220692 | 152..305 | 100 | <- | Minus |
arm_2R | 12220783..12220924 | 9..151 | 97 | | Minus |
BO04820.complete Sequence
1198 bp (1198 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629875
> BO04820.complete
GAAGTTATCAGTCGACATGATGTCGGAATACTGGATTATCTCGGCCCCTG
GCGACAAGACCTGCCAGCAGACGTACGACACGATGAACAATCTGACCAGC
AAGCAACACAACCTGTGCAATAACTACAAGTTCCATATTCCAGATCTTAA
GGTGGGCACCCTCGACCAACTGGTGGGCCTCTCCGACGATCTGGGCAAAC
TGGACACCTATGTGGAGCAGATCACCCGCAAGGTGGCCAACTATCTGGGC
GAGGTGCTCGAGGATCAGCGGGACAAGCTGCACGAGAACCTGATGGCCAA
CAACACCGAACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCA
AGTATCCGATCAAGCAGTCGCTGCGCAACATCGCCGACATTATCTCCAAG
CAGATCGGTCAGATCGATGGCGATTTGAAGACCAAGTCGCAGGCCTATAA
CAACCTCAAGGGAAATCTGCAGAATCTGGAAAAGAAGAAGACTGGCAGTC
TGCTGACCAGGAATCTGGCTGATTTGGTCAAGAAGGAGCACTTCATCCTG
GACTCGGAGTACCTGACCACCCTGCTGGTCATTGTACCCAAGGTCATGGC
TAATGACTGGCTGACCAACTACGAGAAGATCACCGACATGATCGTGCCCC
GCTCGTCGCAGCTCATCCAGGAGGACGCCGACTACTGCCTGTTCAACGTG
ACGCTCTTCAAGAAGGTTGCCGAGGAGTTTAAGCTGCATGCCCGCGAGCG
CAAGTTCATTGTGCGCGACTTTGTGTACAACGAGGAGGAGCTGGCTGCCG
GCAAGAACGAGATGACCAAGCTGATGACGGACAAGAAGAAGCAGTTTGGT
CCTTTGGTTCGTTGGCTGAAGGTGAACTTCAGCGAGGCCTTCTGCGCCCT
CATCCACGTCAAGGCGCTGCGCGTGTTTGTGGAATCCGTGCTGAGATACG
GACTGCCTGTTAACTTCCAGGCCATCTTGATCGAGCCCAACAAGAAGAGC
GTGAAGCGTCTGCGCGATGTGCTCAACCAGCTGTATGGTCACTTGGATGG
CGCCTCCGCCGGCGGTGCTGTCAGCAGTGCTGATAACGTAGACATCCCCG
GCCTGGGCTTTGGCCAGTCCGAATACTTCCCCTATGTGTTCTACAAGGTC
AACATCGATATGGTGGAGCAGGCCAAGGTCGCAAGCTTTCTAGACCAT
BO04820.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha44-RB | 1167 | CG8048-PB | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Vha44-RA | 1167 | CG8048-PA | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Vha44-RC | 1329 | CG8048-PC | 452..1326 | 306..1180 | 4375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha44-RB | 1431 | CG8048-RB | 212..1375 | 17..1180 | 5820 | 100 | Plus |
Vha44-RA | 1470 | CG8048-RA | 157..1320 | 17..1180 | 5820 | 100 | Plus |
Vha44-RC | 2693 | CG8048-RC | 663..1537 | 306..1180 | 4375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16326492..16326748 | 848..592 | 1285 | 100 | Minus |
2R | 25286936 | 2R | 16326974..16327160 | 492..306 | 935 | 100 | Minus |
2R | 25286936 | 2R | 16333034..16333190 | 305..149 | 785 | 100 | Minus |
2R | 25286936 | 2R | 16326135..16326275 | 1084..944 | 705 | 100 | Minus |
2R | 25286936 | 2R | 16333276..16333412 | 153..17 | 685 | 100 | Minus |
2R | 25286936 | 2R | 16326810..16326909 | 592..493 | 500 | 100 | Minus |
2R | 25286936 | 2R | 16326333..16326430 | 945..848 | 490 | 100 | Minus |
2R | 25286936 | 2R | 16325969..16326064 | 1180..1085 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:26:34 has no hits.
BO04820.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:13 Download gff for
BO04820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RB | 1..1167 | 17..1184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:59 Download gff for
BO04820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RB | 196..1375 | 5..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:15 Download gff for
BO04820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RA | 157..1320 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:13 Download gff for
BO04820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RB | 196..1375 | 5..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:38 Download gff for
BO04820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha44-RA | 157..1320 | 17..1182 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:38 Download gff for
BO04820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16326493..16326748 | 592..847 | 100 | <- | Minus |
2R | 16326811..16326909 | 493..591 | 100 | <- | Minus |
2R | 16326974..16327160 | 306..492 | 100 | <- | Minus |
2R | 16333034..16333187 | 152..305 | 100 | <- | Minus |
2R | 16333278..16333412 | 17..151 | 100 | | Minus |
2R | 16325967..16326064 | 1085..1182 | 97 | <- | Minus |
2R | 16326135..16326273 | 946..1084 | 100 | <- | Minus |
2R | 16326333..16326430 | 848..945 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:15 Download gff for
BO04820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12213472..12213569 | 1085..1182 | 97 | <- | Minus |
arm_2R | 12213640..12213778 | 946..1084 | 100 | <- | Minus |
arm_2R | 12213838..12213935 | 848..945 | 100 | <- | Minus |
arm_2R | 12213998..12214253 | 592..847 | 100 | <- | Minus |
arm_2R | 12214316..12214414 | 493..591 | 100 | <- | Minus |
arm_2R | 12214479..12214665 | 306..492 | 100 | <- | Minus |
arm_2R | 12220539..12220692 | 152..305 | 100 | <- | Minus |
arm_2R | 12220783..12220917 | 17..151 | 100 | | Minus |
BO04820.pep Sequence
Translation from 16 to 1198
> BO04820.pep
MMSEYWIISAPGDKTCQQTYDTMNNLTSKQHNLCNNYKFHIPDLKVGTLD
QLVGLSDDLGKLDTYVEQITRKVANYLGEVLEDQRDKLHENLMANNTELP
QYLTRFQWDMAKYPIKQSLRNIADIISKQIGQIDGDLKTKSQAYNNLKGN
LQNLEKKKTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLT
NYEKITDMIVPRSSQLIQEDADYCLFNVTLFKKVAEEFKLHARERKFIVR
DFVYNEEELAAGKNEMTKLMTDKKKQFGPLVRWLKVNFSEAFCALIHVKA
LRVFVESVLRYGLPVNFQAILIEPNKKSVKRLRDVLNQLYGHLDGASAGG
AVSSADNVDIPGLGFGQSEYFPYVFYKVNIDMVEQAKVASFLDH
BO04820.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha44-PB | 388 | CG8048-PB | 1..388 | 1..388 | 2008 | 100 | Plus |
Vha44-PA | 388 | CG8048-PA | 1..388 | 1..388 | 2008 | 100 | Plus |
Vha44-PC | 442 | CG8048-PC | 1..442 | 1..388 | 1895 | 86.2 | Plus |
Vha44-PF | 836 | CG8048-PF | 546..836 | 98..388 | 1490 | 100 | Plus |
Vha44-PE | 836 | CG8048-PE | 546..836 | 98..388 | 1490 | 100 | Plus |
Vha44-PF | 836 | CG8048-PF | 1..100 | 1..100 | 516 | 97 | Plus |