Clone BO04824 Report

Search the DGRC for BO04824

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG5214-RA
Protein status:BO04824.pep: validated full length
Sequenced Size:1438

Clone Sequence Records

BO04824.3prime Sequence

916 bp (758 high quality bases) assembled on 2005-12-02

> BO04824.3prime
ATGGTCTAGAAAGCTTGCCAATCCGGCAACAATTATTGCTGGGTTCTCAA
CGGCAGCCTTTATTTTTCGCAGGAACAGGACCGCCTCACGTCCATCAATG
ATTCGGTGATCGTAGGTCAGGGCGATGTACATCATAGGACGTATCTTGAC
CTCTCCCTTGACAGCAATTGGCCGCTCAAAGATGCCGTGCATGCCGAGAA
TGGCACTCTGTGGCGGATTGATGATGGGCGTGCCCATCAGGGATCCGAAC
ACTCCGCCATTGCTGATGGTGAAGGTGCCACCGTCCATGTCTTCCACGGT
GATGGCATCCCGCCTGGCCTTATCGGCCAGACCGGCCAGTGCGATCTCGA
TGTCCGCATAGTTCATGCCCTCCACGTTGCGGATGACGGGTACCACCAAT
CCACGGGGCGTAGCCACGGCCACAGAGATGTCAACGTAGTCGCGATACAC
GATGTCCGTGCCATCGATGACGGCGTTCACTACGGGCTGATCCTGCAGCG
CATAGGCACTAGCCTTGGCGAAGATCGACATGAATCCAAACTTAATACCA
TACTTCTTAGTGAACGCATCCAGATTCTGCTTTCGGAAGTCCATGGCATA
GCTCATATCAACCTCGTTGAAAGTGGTGAGCATGGCACATGTGTTCTGGG
CATCCTTCAAGCGGGCGGCAATCTTTAGACGCATGCGGTTCATCTTGACA
CGCTGCTCGGACCTAGTGCCTAGGATCTGCCGCGATCCGTCCGCTGGTGG
CACCTTCACCTGGGCGACGGCCGGTTTGAGTGCAGCCACTGGAGCAGGTG
GCGGTGGTCGAGGGGCTGCCTTTGGTGGTGGCGGTGGTGGTGGCTTTGGT
GCGCCGGCCGCAGGTGGTGGAGGTGCCGGCTTGGGTGCAGCAGCTGGAGC
TGGTGCTGCTTTGGGG

BO04824.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5214-PA 1407 CG5214-RA 511..1404 912..19 4395 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5214-RA 1817 CG5214-RA 647..1544 916..19 4430 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11245346..11245660 916..602 1560 99.7 Minus
3R 32079331 3R 11246087..11246395 457..149 1515 99.4 Minus
3R 32079331 3R 11245737..11245884 603..456 740 100 Minus
3R 32079331 3R 11246456..11246589 152..19 655 99.3 Minus
Blast to na_te.dros performed on 2015-02-13 01:09:03 has no hits.

BO04824.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:46 Download gff for BO04824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5214-PA 506..1407 15..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:26 Download gff for BO04824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5214-PA 506..1407 15..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:40 Download gff for BO04824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 646..1547 15..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:03 Download gff for BO04824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 646..1547 15..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:03 Download gff for BO04824.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11245345..11245660 602..916 99 -> Minus
3R 11245739..11245883 457..601 100 -> Minus
3R 11246088..11246393 151..456 99 -> Minus
3R 11246458..11246593 15..150 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:40 Download gff for BO04824.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7071067..7071382 602..916 99 -> Minus
arm_3R 7071461..7071605 457..601 100 -> Minus
arm_3R 7071810..7072115 151..456 99 -> Minus
arm_3R 7072180..7072315 15..150 97 -> Minus

BO04824.5prime Sequence

881 bp (859 high quality bases) assembled on 2005-11-29

> BO04824.5prime
GAAGTTATCAGTCGACATGACGGGAATAATTTCGATCGTAACGAGACGGC
TGCCCCAAACTTTGGGAATGCGAGCCCTGCGGAGTAATGAGGTAAAGCGC
TGCATCCGCCAATATTCTCGGTTAGTTGCCTGCGCCGCCCAGCAGCAGCA
ACTGCTTCGCCAGGATGGCTCGAATCGCTGCCAGGAGGCCACCAGGCTTC
TCACCTGGCAGGGAATCCACACCACGTCGAGCTTGTGGTCGGAGCAGACC
GTCAATGTGCCACCCTTTGCGGACTCCATTGCCGAGGGTGACATCAAGTT
TACTTGCAAGGTGGGTGACTCATTCGCCGCTGACGAGGCTGTCATGGAAA
TCGAGACCGACAAGACGACGGTGGCTGTGCCAGCTCCCTTCTCCGGAACT
CTGACCGACATTCTGGTGAAGGATGGCGACACCGTCAAGCCCGGCCAGGC
TCTGTTCAAGATTAAGCCCGGTGCAGCGCCCGCCAAGGCAGCTGCTCCAG
CGGCTGCTCCTGCGCCTGCTGCCCCAAAAGCAGCACCAGCTCCAGCTGCT
GCACCCAAGCCGGCACCTCCACCACCTGCGGCCGGCGCACCAAAGCCACC
ACCACCGCCACCACCAAAGGCAGCCCCTCGACCACCGCCACCTGCTCCAG
TGGCTGCACTCAAACCGGCCGTCGCCCAGGTGAAGGTGCCACCAGCGGAC
GGATCGCGGCAGATCCTAGGCACTAGGTCCGAGCAGCGTGTCAAGATGAA
CCGCATGCGTCTAAAGATTGCCGCCCGCTTGAAGGATGCCCAGAACACAT
GTGCCATGCTCACCACTTTCAACGAGGTTGATATGAGCTATGCCATGGAC
TTCCGAAAGCAGAATCTGGATGCGTTCACTA

BO04824.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5214-PA 1407 CG5214-RA 1..865 17..881 4275 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5214-RA 1817 CG5214-RA 141..1005 17..881 4295 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11245121..11245660 298..837 2670 99.6 Plus
3R 32079331 3R 11244785..11244891 90..196 535 100 Plus
3R 32079331 3R 11244943..11245048 194..299 530 100 Plus
3R 32079331 3R 11244442..11244521 17..96 400 100 Plus
3R 32079331 3R 11245737..11245782 836..881 230 100 Plus
Blast to na_te.dros performed 2015-02-13 15:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2597..2658 494..555 112 64.5 Plus

BO04824.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:46 Download gff for BO04824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5214-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:28 Download gff for BO04824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5214-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:50 Download gff for BO04824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 136..1004 9..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:11:39 Download gff for BO04824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 136..1004 9..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:11:39 Download gff for BO04824.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11244437..11244516 9..91 96 -> Plus
3R 11244787..11244890 92..195 100 -> Plus
3R 11244945..11245046 196..297 100 -> Plus
3R 11245121..11245660 298..837 99 -> Plus
3R 11245739..11245781 838..880 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:50 Download gff for BO04824.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7070159..7070238 9..91 96 -> Plus
arm_3R 7070509..7070612 92..195 100 -> Plus
arm_3R 7070667..7070768 196..297 100 -> Plus
arm_3R 7070843..7071382 298..837 99 -> Plus
arm_3R 7071461..7071503 838..880 100   Plus

BO04824.complete Sequence

1438 bp (1438 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629877

> BO04824.complete
GAAGTTATCAGTCGACATGACGGGAATAATTTCGATCGTAACGAGACGGC
TGCCCCAAACTTTGGGAATGCGAGCCCTGCGGAGTAATGAGGTAAAGCGC
TGCATCCGCCAATATTCTCGGTTAGTTGCCTGCGCCGCCCAGCAGCAGCA
ACTGCTTCGCCAGGATGGCTCGAATCGCTGCCAGGAGGCCACCAGGCTTC
TCACCTGGCAGGGAATCCACACCACGTCGAGCTTGTGGTCGGAGCAGACC
GTCAATGTGCCACCCTTTGCGGACTCCATTGCCGAGGGTGACATCAAGTT
TACTTGCAAGGTGGGTGACTCATTCGCCGCTGACGAGGCTGTCATGGAAA
TCGAGACCGACAAGACGACGGTGGCTGTGCCAGCTCCCTTCTCCGGAACT
CTGACCGACATTCTGGTGAAGGATGGCGACACCGTCAAGCCCGGCCAGGC
TCTGTTCAAGATTAAGCCCGGTGCAGCGCCCGCCAAGGCAGCTGCTCCAG
CGGCTGCTCCTGCGCCTGCTGCCCCAAAAGCAGCACCAGCTCCAGCTGCT
GCACCCAAGCCGGCACCTCCACCACCTGCGGCCGGCGCACCAAAGCCACC
ACCACCGCCACCACCAAAGGCAGCCCCTCGACCACCGCCACCTGCTCCAG
TGGCTGCACTCAAACCGGCCGTCGCCCAGGTGAAGGTGCCACCAGCGGAC
GGATCGCGGCAGATCCTAGGCACTAGGTCCGAGCAGCGTGTCAAGATGAA
CCGCATGCGTCTAAAGATTGCCGCCCGCTTGAAGGATGCCCAGAACACAT
GTGCCATGCTCACCACTTTCAACGAGGTTGATATGAGCTATGCCATGGAC
TTCCGAAAGCAGAATCTGGATGCGTTCACTAAGAAGTATGGTATTAAGTT
TGGATTCATGTCGATCTTCGCCAAGGCTAGTGCCTATGCGCTGCAGGATC
AGCCCGTAGTGAACGCCGTCATCGATGGCACGGACATCGTGTATCGCGAC
TACGTTGACATCTCTGTGGCCGTGGCTACGCCCCGTGGATTGGTGGTACC
CGTCATCCGCAACGTGGAGGGCATGAACTATGCGGACATCGAGATCGCAC
TGGCCGGTCTGGCCGATAAGGCCAGGCGGGATGCCATCACCGTGGAAGAC
ATGGACGGTGGCACCTTCACCATCAGCAATGGCGGAGTGTTCGGATCCCT
GATGGGCACGCCCATCATCAATCCGCCACAGAGTGCCATTCTCGGCATGC
ACGGCATCTTTGAGCGGCCAATTGCTGTCAAGGGAGAGGTCAAGATACGT
CCTATGATGTACATCGCCCTGACCTACGATCACCGAATCATTGATGGACG
TGAGGCGGTCCTGTTCCTGCGAAAAATAAAGGCTGCCGTTGAGAACCCAG
CAATAATTGTTGCCGGATTGGCAAGCTTTCTAGACCAT

BO04824.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5214-RA 1407 CG5214-PA 1..1404 17..1420 6945 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5214-RA 1817 CG5214-RA 141..1544 17..1420 6945 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11245121..11245660 298..837 2670 99.6 Plus
3R 32079331 3R 11246087..11246395 982..1290 1515 99.4 Plus
3R 32079331 3R 11245737..11245884 836..983 740 100 Plus
3R 32079331 3R 11246456..11246589 1287..1420 655 99.3 Plus
3R 32079331 3R 11244785..11244891 90..196 535 100 Plus
3R 32079331 3R 11244943..11245048 194..299 530 100 Plus
3R 32079331 3R 11244442..11244521 17..96 400 100 Plus
Blast to na_te.dros performed 2014-11-27 13:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2597..2658 494..555 112 64.5 Plus

BO04824.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:13 Download gff for BO04824.complete
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 1..1407 17..1424 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:57 Download gff for BO04824.complete
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 154..1565 9..1424 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:38 Download gff for BO04824.complete
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 141..1544 17..1422 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:13 Download gff for BO04824.complete
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 154..1565 9..1424 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:04 Download gff for BO04824.complete
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 141..1544 17..1422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:04 Download gff for BO04824.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11244442..11244516 17..91 100 -> Plus
3R 11244787..11244890 92..195 100 -> Plus
3R 11244945..11245046 196..297 100 -> Plus
3R 11245121..11245660 298..837 99 -> Plus
3R 11245739..11245883 838..982 100 -> Plus
3R 11246088..11246393 983..1288 99 -> Plus
3R 11246458..11246589 1289..1422 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:38 Download gff for BO04824.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7072180..7072311 1289..1422 97   Plus
arm_3R 7070164..7070238 17..91 100 -> Plus
arm_3R 7070509..7070612 92..195 100 -> Plus
arm_3R 7070667..7070768 196..297 100 -> Plus
arm_3R 7070843..7071382 298..837 99 -> Plus
arm_3R 7071461..7071605 838..982 100 -> Plus
arm_3R 7071810..7072115 983..1288 99 -> Plus

BO04824.pep Sequence

Translation from 16 to 1438

> BO04824.pep
MTGIISIVTRRLPQTLGMRALRSNEVKRCIRQYSRLVACAAQQQQLLRQD
GSNRCQEATRLLTWQGIHTTSSLWSEQTVNVPPFADSIAEGDIKFTCKVG
DSFAADEAVMEIETDKTTVAVPAPFSGTLTDILVKDGDTVKPGQALFKIK
PGAAPAKAAAPAAAPAPAAPKAAPAPAAAPKPAPPPPAAGAPKPPPPPPP
KAAPRPPPPAPVAALKPAVAQVKVPPADGSRQILGTRSEQRVKMNRMRLK
IAARLKDAQNTCAMLTTFNEVDMSYAMDFRKQNLDAFTKKYGIKFGFMSI
FAKASAYALQDQPVVNAVIDGTDIVYRDYVDISVAVATPRGLVVPVIRNV
EGMNYADIEIALAGLADKARRDAITVEDMDGGTFTISNGGVFGSLMGTPI
INPPQSAILGMHGIFERPIAVKGEVKIRPMMYIALTYDHRIIDGREAVLF
LRKIKAAVENPAIIVAGLASFLDH

BO04824.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5214-PA 468 CG5214-PA 1..468 1..468 2389 100 Plus
CG5261-PC 473 CG5261-PC 83..472 79..465 450 33.8 Plus
CG5261-PD 489 CG5261-PD 83..488 79..465 434 32.5 Plus
CG5261-PE 496 CG5261-PE 83..495 79..465 432 32.2 Plus
CG5261-PF 512 CG5261-PF 83..511 79..465 416 31.1 Plus