Clone Sequence Records
BO04824.3prime Sequence
916 bp (758 high quality bases) assembled on 2005-12-02
> BO04824.3prime
ATGGTCTAGAAAGCTTGCCAATCCGGCAACAATTATTGCTGGGTTCTCAA
CGGCAGCCTTTATTTTTCGCAGGAACAGGACCGCCTCACGTCCATCAATG
ATTCGGTGATCGTAGGTCAGGGCGATGTACATCATAGGACGTATCTTGAC
CTCTCCCTTGACAGCAATTGGCCGCTCAAAGATGCCGTGCATGCCGAGAA
TGGCACTCTGTGGCGGATTGATGATGGGCGTGCCCATCAGGGATCCGAAC
ACTCCGCCATTGCTGATGGTGAAGGTGCCACCGTCCATGTCTTCCACGGT
GATGGCATCCCGCCTGGCCTTATCGGCCAGACCGGCCAGTGCGATCTCGA
TGTCCGCATAGTTCATGCCCTCCACGTTGCGGATGACGGGTACCACCAAT
CCACGGGGCGTAGCCACGGCCACAGAGATGTCAACGTAGTCGCGATACAC
GATGTCCGTGCCATCGATGACGGCGTTCACTACGGGCTGATCCTGCAGCG
CATAGGCACTAGCCTTGGCGAAGATCGACATGAATCCAAACTTAATACCA
TACTTCTTAGTGAACGCATCCAGATTCTGCTTTCGGAAGTCCATGGCATA
GCTCATATCAACCTCGTTGAAAGTGGTGAGCATGGCACATGTGTTCTGGG
CATCCTTCAAGCGGGCGGCAATCTTTAGACGCATGCGGTTCATCTTGACA
CGCTGCTCGGACCTAGTGCCTAGGATCTGCCGCGATCCGTCCGCTGGTGG
CACCTTCACCTGGGCGACGGCCGGTTTGAGTGCAGCCACTGGAGCAGGTG
GCGGTGGTCGAGGGGCTGCCTTTGGTGGTGGCGGTGGTGGTGGCTTTGGT
GCGCCGGCCGCAGGTGGTGGAGGTGCCGGCTTGGGTGCAGCAGCTGGAGC
TGGTGCTGCTTTGGGG
BO04824.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5214-PA | 1407 | CG5214-RA | 511..1404 | 912..19 | 4395 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5214-RA | 1817 | CG5214-RA | 647..1544 | 916..19 | 4430 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11245346..11245660 | 916..602 | 1560 | 99.7 | Minus |
3R | 32079331 | 3R | 11246087..11246395 | 457..149 | 1515 | 99.4 | Minus |
3R | 32079331 | 3R | 11245737..11245884 | 603..456 | 740 | 100 | Minus |
3R | 32079331 | 3R | 11246456..11246589 | 152..19 | 655 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:09:03 has no hits.
BO04824.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:46 Download gff for
BO04824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5214-PA | 506..1407 | 15..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:26 Download gff for
BO04824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5214-PA | 506..1407 | 15..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:40 Download gff for
BO04824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5214-RA | 646..1547 | 15..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:03 Download gff for
BO04824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5214-RA | 646..1547 | 15..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:03 Download gff for
BO04824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11245345..11245660 | 602..916 | 99 | -> | Minus |
3R | 11245739..11245883 | 457..601 | 100 | -> | Minus |
3R | 11246088..11246393 | 151..456 | 99 | -> | Minus |
3R | 11246458..11246593 | 15..150 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:40 Download gff for
BO04824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7071067..7071382 | 602..916 | 99 | -> | Minus |
arm_3R | 7071461..7071605 | 457..601 | 100 | -> | Minus |
arm_3R | 7071810..7072115 | 151..456 | 99 | -> | Minus |
arm_3R | 7072180..7072315 | 15..150 | 97 | -> | Minus |
BO04824.5prime Sequence
881 bp (859 high quality bases) assembled on 2005-11-29
> BO04824.5prime
GAAGTTATCAGTCGACATGACGGGAATAATTTCGATCGTAACGAGACGGC
TGCCCCAAACTTTGGGAATGCGAGCCCTGCGGAGTAATGAGGTAAAGCGC
TGCATCCGCCAATATTCTCGGTTAGTTGCCTGCGCCGCCCAGCAGCAGCA
ACTGCTTCGCCAGGATGGCTCGAATCGCTGCCAGGAGGCCACCAGGCTTC
TCACCTGGCAGGGAATCCACACCACGTCGAGCTTGTGGTCGGAGCAGACC
GTCAATGTGCCACCCTTTGCGGACTCCATTGCCGAGGGTGACATCAAGTT
TACTTGCAAGGTGGGTGACTCATTCGCCGCTGACGAGGCTGTCATGGAAA
TCGAGACCGACAAGACGACGGTGGCTGTGCCAGCTCCCTTCTCCGGAACT
CTGACCGACATTCTGGTGAAGGATGGCGACACCGTCAAGCCCGGCCAGGC
TCTGTTCAAGATTAAGCCCGGTGCAGCGCCCGCCAAGGCAGCTGCTCCAG
CGGCTGCTCCTGCGCCTGCTGCCCCAAAAGCAGCACCAGCTCCAGCTGCT
GCACCCAAGCCGGCACCTCCACCACCTGCGGCCGGCGCACCAAAGCCACC
ACCACCGCCACCACCAAAGGCAGCCCCTCGACCACCGCCACCTGCTCCAG
TGGCTGCACTCAAACCGGCCGTCGCCCAGGTGAAGGTGCCACCAGCGGAC
GGATCGCGGCAGATCCTAGGCACTAGGTCCGAGCAGCGTGTCAAGATGAA
CCGCATGCGTCTAAAGATTGCCGCCCGCTTGAAGGATGCCCAGAACACAT
GTGCCATGCTCACCACTTTCAACGAGGTTGATATGAGCTATGCCATGGAC
TTCCGAAAGCAGAATCTGGATGCGTTCACTA
BO04824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5214-PA | 1407 | CG5214-RA | 1..865 | 17..881 | 4275 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5214-RA | 1817 | CG5214-RA | 141..1005 | 17..881 | 4295 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11245121..11245660 | 298..837 | 2670 | 99.6 | Plus |
3R | 32079331 | 3R | 11244785..11244891 | 90..196 | 535 | 100 | Plus |
3R | 32079331 | 3R | 11244943..11245048 | 194..299 | 530 | 100 | Plus |
3R | 32079331 | 3R | 11244442..11244521 | 17..96 | 400 | 100 | Plus |
3R | 32079331 | 3R | 11245737..11245782 | 836..881 | 230 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 15:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2658 | 494..555 | 112 | 64.5 | Plus |
BO04824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:46 Download gff for
BO04824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5214-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:28 Download gff for
BO04824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5214-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:50 Download gff for
BO04824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5214-RA | 136..1004 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:11:39 Download gff for
BO04824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5214-RA | 136..1004 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:11:39 Download gff for
BO04824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11244437..11244516 | 9..91 | 96 | -> | Plus |
3R | 11244787..11244890 | 92..195 | 100 | -> | Plus |
3R | 11244945..11245046 | 196..297 | 100 | -> | Plus |
3R | 11245121..11245660 | 298..837 | 99 | -> | Plus |
3R | 11245739..11245781 | 838..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:50 Download gff for
BO04824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7070159..7070238 | 9..91 | 96 | -> | Plus |
arm_3R | 7070509..7070612 | 92..195 | 100 | -> | Plus |
arm_3R | 7070667..7070768 | 196..297 | 100 | -> | Plus |
arm_3R | 7070843..7071382 | 298..837 | 99 | -> | Plus |
arm_3R | 7071461..7071503 | 838..880 | 100 | | Plus |
BO04824.complete Sequence
1438 bp (1438 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629877
> BO04824.complete
GAAGTTATCAGTCGACATGACGGGAATAATTTCGATCGTAACGAGACGGC
TGCCCCAAACTTTGGGAATGCGAGCCCTGCGGAGTAATGAGGTAAAGCGC
TGCATCCGCCAATATTCTCGGTTAGTTGCCTGCGCCGCCCAGCAGCAGCA
ACTGCTTCGCCAGGATGGCTCGAATCGCTGCCAGGAGGCCACCAGGCTTC
TCACCTGGCAGGGAATCCACACCACGTCGAGCTTGTGGTCGGAGCAGACC
GTCAATGTGCCACCCTTTGCGGACTCCATTGCCGAGGGTGACATCAAGTT
TACTTGCAAGGTGGGTGACTCATTCGCCGCTGACGAGGCTGTCATGGAAA
TCGAGACCGACAAGACGACGGTGGCTGTGCCAGCTCCCTTCTCCGGAACT
CTGACCGACATTCTGGTGAAGGATGGCGACACCGTCAAGCCCGGCCAGGC
TCTGTTCAAGATTAAGCCCGGTGCAGCGCCCGCCAAGGCAGCTGCTCCAG
CGGCTGCTCCTGCGCCTGCTGCCCCAAAAGCAGCACCAGCTCCAGCTGCT
GCACCCAAGCCGGCACCTCCACCACCTGCGGCCGGCGCACCAAAGCCACC
ACCACCGCCACCACCAAAGGCAGCCCCTCGACCACCGCCACCTGCTCCAG
TGGCTGCACTCAAACCGGCCGTCGCCCAGGTGAAGGTGCCACCAGCGGAC
GGATCGCGGCAGATCCTAGGCACTAGGTCCGAGCAGCGTGTCAAGATGAA
CCGCATGCGTCTAAAGATTGCCGCCCGCTTGAAGGATGCCCAGAACACAT
GTGCCATGCTCACCACTTTCAACGAGGTTGATATGAGCTATGCCATGGAC
TTCCGAAAGCAGAATCTGGATGCGTTCACTAAGAAGTATGGTATTAAGTT
TGGATTCATGTCGATCTTCGCCAAGGCTAGTGCCTATGCGCTGCAGGATC
AGCCCGTAGTGAACGCCGTCATCGATGGCACGGACATCGTGTATCGCGAC
TACGTTGACATCTCTGTGGCCGTGGCTACGCCCCGTGGATTGGTGGTACC
CGTCATCCGCAACGTGGAGGGCATGAACTATGCGGACATCGAGATCGCAC
TGGCCGGTCTGGCCGATAAGGCCAGGCGGGATGCCATCACCGTGGAAGAC
ATGGACGGTGGCACCTTCACCATCAGCAATGGCGGAGTGTTCGGATCCCT
GATGGGCACGCCCATCATCAATCCGCCACAGAGTGCCATTCTCGGCATGC
ACGGCATCTTTGAGCGGCCAATTGCTGTCAAGGGAGAGGTCAAGATACGT
CCTATGATGTACATCGCCCTGACCTACGATCACCGAATCATTGATGGACG
TGAGGCGGTCCTGTTCCTGCGAAAAATAAAGGCTGCCGTTGAGAACCCAG
CAATAATTGTTGCCGGATTGGCAAGCTTTCTAGACCAT
BO04824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5214-RA | 1407 | CG5214-PA | 1..1404 | 17..1420 | 6945 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5214-RA | 1817 | CG5214-RA | 141..1544 | 17..1420 | 6945 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:20:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11245121..11245660 | 298..837 | 2670 | 99.6 | Plus |
3R | 32079331 | 3R | 11246087..11246395 | 982..1290 | 1515 | 99.4 | Plus |
3R | 32079331 | 3R | 11245737..11245884 | 836..983 | 740 | 100 | Plus |
3R | 32079331 | 3R | 11246456..11246589 | 1287..1420 | 655 | 99.3 | Plus |
3R | 32079331 | 3R | 11244785..11244891 | 90..196 | 535 | 100 | Plus |
3R | 32079331 | 3R | 11244943..11245048 | 194..299 | 530 | 100 | Plus |
3R | 32079331 | 3R | 11244442..11244521 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2658 | 494..555 | 112 | 64.5 | Plus |
BO04824.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:13 Download gff for
BO04824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5214-RA | 1..1407 | 17..1424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:57 Download gff for
BO04824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5214-RA | 154..1565 | 9..1424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:38 Download gff for
BO04824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5214-RA | 141..1544 | 17..1422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:13 Download gff for
BO04824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5214-RA | 154..1565 | 9..1424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:04 Download gff for
BO04824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5214-RA | 141..1544 | 17..1422 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:04 Download gff for
BO04824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11244442..11244516 | 17..91 | 100 | -> | Plus |
3R | 11244787..11244890 | 92..195 | 100 | -> | Plus |
3R | 11244945..11245046 | 196..297 | 100 | -> | Plus |
3R | 11245121..11245660 | 298..837 | 99 | -> | Plus |
3R | 11245739..11245883 | 838..982 | 100 | -> | Plus |
3R | 11246088..11246393 | 983..1288 | 99 | -> | Plus |
3R | 11246458..11246589 | 1289..1422 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:38 Download gff for
BO04824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7072180..7072311 | 1289..1422 | 97 | | Plus |
arm_3R | 7070164..7070238 | 17..91 | 100 | -> | Plus |
arm_3R | 7070509..7070612 | 92..195 | 100 | -> | Plus |
arm_3R | 7070667..7070768 | 196..297 | 100 | -> | Plus |
arm_3R | 7070843..7071382 | 298..837 | 99 | -> | Plus |
arm_3R | 7071461..7071605 | 838..982 | 100 | -> | Plus |
arm_3R | 7071810..7072115 | 983..1288 | 99 | -> | Plus |
BO04824.pep Sequence
Translation from 16 to 1438
> BO04824.pep
MTGIISIVTRRLPQTLGMRALRSNEVKRCIRQYSRLVACAAQQQQLLRQD
GSNRCQEATRLLTWQGIHTTSSLWSEQTVNVPPFADSIAEGDIKFTCKVG
DSFAADEAVMEIETDKTTVAVPAPFSGTLTDILVKDGDTVKPGQALFKIK
PGAAPAKAAAPAAAPAPAAPKAAPAPAAAPKPAPPPPAAGAPKPPPPPPP
KAAPRPPPPAPVAALKPAVAQVKVPPADGSRQILGTRSEQRVKMNRMRLK
IAARLKDAQNTCAMLTTFNEVDMSYAMDFRKQNLDAFTKKYGIKFGFMSI
FAKASAYALQDQPVVNAVIDGTDIVYRDYVDISVAVATPRGLVVPVIRNV
EGMNYADIEIALAGLADKARRDAITVEDMDGGTFTISNGGVFGSLMGTPI
INPPQSAILGMHGIFERPIAVKGEVKIRPMMYIALTYDHRIIDGREAVLF
LRKIKAAVENPAIIVAGLASFLDH
BO04824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5214-PA | 468 | CG5214-PA | 1..468 | 1..468 | 2389 | 100 | Plus |
CG5261-PC | 473 | CG5261-PC | 83..472 | 79..465 | 450 | 33.8 | Plus |
CG5261-PD | 489 | CG5261-PD | 83..488 | 79..465 | 434 | 32.5 | Plus |
CG5261-PE | 496 | CG5261-PE | 83..495 | 79..465 | 432 | 32.2 | Plus |
CG5261-PF | 512 | CG5261-PF | 83..511 | 79..465 | 416 | 31.1 | Plus |