Clone Sequence Records
BO04825.5prime Sequence
730 bp (294 high quality bases) assembled on 2005-09-08
> BO04825.5prime
CAGTCGACATGCAATGTTCTAGCTCTCGGCCAGTCGGAGGTAAAGCAGCC
GGTGGAGCATAAGCAGGAGGGGCAGGAGCAACTGGCCAGATGACTGTGAC
CACCATGGAGGCACAGGTCAAGGCAGCACACCATCATCATCTACACCATC
CCACGGGCGGAGGGGCCCAGCTCAAGGTGGAGGAGGAGGAGCCGGATCCT
GTTGAGGACGAGATGACCGTACTGCTGGCCAATAAGAACTTTCACTATGA
CGTCTCCTCCTATCTGGACGACGACGCTTTTGTGGAGCTCAAAGAAGACA
CCGCCCAAGCGGATGATGCGGGCTCGGGCGTTGGCTTCTACAATCCGGAT
GAACTGCTGCTCGATGACCAGCCACATCCGCAAGTCACGTGGCTGGACGA
CGACGAGATCGAGACGCTCGATCGCGTGACGCTGGACATGGGTAATATGT
TCTTCAGTCGCGTCGACAGCCAGGATGTCATCTTATCAGCAGAAAAAGAG
CAGCATTAAGATGGTGGGCAAGTACATAATGGGCGATGTTCTCGGCGAGG
GATCGTACGGCAAGGTGAAGGAGGCCATGAACTCGGAGAACCTGTGCCGC
CTGGCCGTCAAGATCCTGACTAAGGGGAACTTGCGCCGGATTCCCAACGG
TCAACAGAACGTCCCCCGCGAGATCGCCTTGCTGAAGCACCTGAAGCATC
AACATGTCGTGGAGCTGGTCCATGTTTTGT
BO04825.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9374-PE | 1704 | lkb1-RE | 1..467 | 9..475 | 2135 | 98.2 | Plus |
CG9374-PF | 1704 | lkb1-RF | 1..467 | 9..475 | 2135 | 98.2 | Plus |
CG9374-PH | 1704 | lkb1-RH | 1..467 | 9..475 | 2135 | 98.2 | Plus |
CG9374-PI | 1704 | lkb1-RI | 1..467 | 9..475 | 2135 | 98.2 | Plus |
CG9374-PA | 1704 | lkb1-RA | 1..467 | 9..475 | 2135 | 98.2 | Plus |
CG9374-PB | 1704 | lkb1-RB | 1..467 | 9..475 | 2135 | 98.2 | Plus |
CG9374-PC | 1704 | lkb1-RC | 1..467 | 9..475 | 2135 | 98.2 | Plus |
CG9374-PD | 1704 | lkb1-RD | 1..467 | 9..475 | 2135 | 98.2 | Plus |
CG9374-PE | 1704 | lkb1-RE | 475..653 | 484..662 | 745 | 96.6 | Plus |
CG9374-PF | 1704 | lkb1-RF | 475..653 | 484..662 | 745 | 96.6 | Plus |
CG9374-PH | 1704 | lkb1-RH | 475..653 | 484..662 | 745 | 96.6 | Plus |
CG9374-PI | 1704 | lkb1-RI | 475..653 | 484..662 | 745 | 96.6 | Plus |
CG9374-PA | 1704 | lkb1-RA | 475..653 | 484..662 | 745 | 96.6 | Plus |
CG9374-PB | 1704 | lkb1-RB | 475..653 | 484..662 | 745 | 96.6 | Plus |
CG9374-PC | 1704 | lkb1-RC | 475..653 | 484..662 | 745 | 96.6 | Plus |
CG9374-PD | 1704 | lkb1-RD | 475..653 | 484..662 | 745 | 96.6 | Plus |
CG9374-PE | 1704 | lkb1-RE | 658..721 | 667..730 | 245 | 95.3 | Plus |
CG9374-PF | 1704 | lkb1-RF | 658..721 | 667..730 | 245 | 95.3 | Plus |
CG9374-PH | 1704 | lkb1-RH | 658..721 | 667..730 | 245 | 95.3 | Plus |
CG9374-PI | 1704 | lkb1-RI | 658..721 | 667..730 | 245 | 95.3 | Plus |
CG9374-PA | 1704 | lkb1-RA | 658..721 | 667..730 | 245 | 95.3 | Plus |
CG9374-PB | 1704 | lkb1-RB | 658..721 | 667..730 | 245 | 95.3 | Plus |
CG9374-PC | 1704 | lkb1-RC | 658..721 | 667..730 | 245 | 95.3 | Plus |
CG9374-PD | 1704 | lkb1-RD | 658..721 | 667..730 | 245 | 95.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lkb1-RJ | 2487 | CG9374-RJ | 351..1071 | 9..730 | 3255 | 96.8 | Plus |
lkb1-RD | 2422 | CG9374-RD | 345..1065 | 9..730 | 3255 | 96.8 | Plus |
lkb1-RC | 2391 | CG9374-RC | 339..1059 | 9..730 | 3255 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:12:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13677110..13677830 | 9..730 | 3230 | 96.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:12:03 has no hits.
BO04825.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:47 Download gff for
BO04825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lkb1-PH | 1..721 | 9..730 | 96 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:30 Download gff for
BO04825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9374-PE | 1..721 | 9..730 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:16 Download gff for
BO04825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lkb1-RC | 335..1059 | 3..730 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:09:08 Download gff for
BO04825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lkb1-RC | 335..1059 | 3..730 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:09:08 Download gff for
BO04825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13677106..13677830 | 3..730 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:16 Download gff for
BO04825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9502828..9503552 | 3..730 | 96 | | Plus |
BO04825.complete Sequence
1735 bp assembled on 2008-11-10
GenBank Submission: KX797767
> BO04825.complete
GAAGTTATCAGTCGACATGCAATGTTCTAGCTCTCGGCCAGTCGGAGGTA
AAGCAGCCGGTGGAGCAGAAGCAGGAGGGGCAGGAGCAACAGGCCAGATG
ACTGTGACCACCATGGAGGCACAGGTCAAGGCAGCACACCATCATCATCT
ACACCATCCCACGGGCGGAGGGGCCCAGCACAAGGTGGAGGAGGAGGAGC
CGGATCCTGTTGAGGACGAGATGACCGTACTGCTGGCCAATAAGAACTTT
CACTATGACGTCGCCTCCGATCTGGACGACGACGCTTTTGTGGAGCTCAA
AGAAGACACCGCCCAAGCGGATGATGCGGGCGCGGGCGTTGGCTTCTACA
ATCCGGATGAACTGCTGCTCGATGACCAGCCACATCCGCAAGTCACGTGG
CTGGACGACGACGAGATCGAGACGCTCGATCGCGTGACGCTGGACATGGG
TAATATGTTCTTCAATCGCGTCGACAGCCAGGACATCATCTATCAGCAGA
AAAAGAAGAGCATTAAGATGGTGGGCAAGTACATAATGGGCGATGTTCTC
GGCGAGGGATCGTACGGCAAGGTGAAGGAGGCCATGAACTCGGAGAACCT
GTGCCGCCTGGCCGTCAAGATCCTGACTAAGCGGAAGTTGCGCCGGATTC
CCAACGGCGAACAGAACGTAACGCGCGAGATCGCCTTGCTGAAGCAGCTG
AAGCATCGACATGTCGTGGAGCTGGTCGATGTTTTGTACAACGAGGAGAA
GCAGAAAATGTACTTGGTCATGGAGTACTGTGTCGGCGGGCTGCAGGAGA
TGATTGACTATCAGCCAGACAAGCGGATGCCGCTGTTTCAGGCGCACGGT
TACTTCAAACAGCTAGTCGACGGCCTGGAGTACTTGCACAGCTGCCGGGT
CATCCACAAGGATATCAAGCCAGGCAACCTGCTGCTCTCCCTGGATCAAA
CGCTGAAGATATCCGACTTCGGTGTGGCGGAGCAACTGGATCTGTTCGCA
CCTGACGACACATGCACGACGGGCCAAGGTTCTCCGGCCTTCCAGCCACC
GGAGATTGCCAACGGACACGAGACGTTCGCCGGCTTCAAGGTGGACATCT
GGTCCAGCGGAGTGACTCTCTACAATTTGGCCACTGGACAGTATCCCTTC
GAGGGCGACAATATCTACCGACTGCTGGAGAACATCGGGCGAGGTCAGTG
GGAGGCGCCCGCGTGGCTATACGAAATGGACGCGGACTTTGCCAACCTGA
TTCTCGGCATGCTTCAGGCTGATCCCAGTAAACGCCTCTCTCTGCAGGAA
ATACGCCACGACACTTGGTTCCGATCCGCACCGGTTAAGACCGGCCCACC
GATACCCATTCCCCCCCTGAAGGGTGACAAATACCGCAACTCCACGGTGA
TACCTTACTTGGAAGCTTACCACTACGGCACCCAGGAGGAGGATGTCTAC
TTTACAGAACACGACGTAAATCAGGAGCTCGCCCGCCAAGCGGCAGCTGC
TGCCTCCGAAATTCGGGCCAAACAGTCGGCGGCAGCCCTAGCCGCCTGCC
ACACCTACGAACCGCCCTCCACAAGTGCCGCAGCCGCCAGCAATTCGCTG
GGCAACGGTAGCAGAGAGGAGGCGCCCGTCAAGAAGAAGGGATCGGCACT
GAAGAGGCGCGCCAAGAAGCTGACGTCCTGCATCTCCGTGCGCAAGCTGA
GCCACTGCCGAACTTCGGCAAGCTTTCTAGACCAT
BO04825.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lkb1-RJ | 1704 | CG9374-PJ | 1..1701 | 17..1717 | 8490 | 99.9 | Plus |
lkb1-RD | 1704 | CG9374-PD | 1..1701 | 17..1717 | 8490 | 99.9 | Plus |
lkb1-RC | 1704 | CG9374-PC | 1..1701 | 17..1717 | 8490 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:44:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lkb1-RJ | 2487 | CG9374-RJ | 351..2051 | 17..1717 | 8490 | 99.9 | Plus |
lkb1-RD | 2422 | CG9374-RD | 345..2045 | 17..1717 | 8490 | 99.9 | Plus |
lkb1-RC | 2391 | CG9374-RC | 339..2039 | 17..1717 | 8490 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13677110..13678212 | 17..1119 | 5500 | 99.9 | Plus |
3R | 32079331 | 3R | 13678750..13678994 | 1473..1717 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 13678279..13678473 | 1120..1314 | 975 | 100 | Plus |
3R | 32079331 | 3R | 13678535..13678692 | 1315..1472 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:44:34 has no hits.
BO04825.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:21 Download gff for
BO04825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lkb1-RH | 475..2184 | 11..1723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:37 Download gff for
BO04825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lkb1-RC | 339..2039 | 17..1719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:07 Download gff for
BO04825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lkb1-RH | 479..2179 | 17..1719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:28 Download gff for
BO04825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lkb1-RC | 339..2039 | 17..1719 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:28 Download gff for
BO04825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13678750..13678994 | 1473..1719 | 99 | | Plus |
3R | 13678279..13678473 | 1120..1314 | 100 | -> | Plus |
3R | 13678535..13678692 | 1315..1472 | 100 | -> | Plus |
3R | 13677110..13678212 | 17..1119 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:37 Download gff for
BO04825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9502832..9503934 | 17..1119 | 99 | -> | Plus |
arm_3R | 9504001..9504195 | 1120..1314 | 100 | -> | Plus |
arm_3R | 9504257..9504414 | 1315..1472 | 100 | -> | Plus |
arm_3R | 9504472..9504716 | 1473..1719 | 99 | | Plus |
BO04825.pep Sequence
Translation from 16 to 1735
> BO04825.pep
MQCSSSRPVGGKAAGGAEAGGAGATGQMTVTTMEAQVKAAHHHHLHHPTG
GGAQHKVEEEEPDPVEDEMTVLLANKNFHYDVASDLDDDAFVELKEDTAQ
ADDAGAGVGFYNPDELLLDDQPHPQVTWLDDDEIETLDRVTLDMGNMFFN
RVDSQDIIYQQKKKSIKMVGKYIMGDVLGEGSYGKVKEAMNSENLCRLAV
KILTKRKLRRIPNGEQNVTREIALLKQLKHRHVVELVDVLYNEEKQKMYL
VMEYCVGGLQEMIDYQPDKRMPLFQAHGYFKQLVDGLEYLHSCRVIHKDI
KPGNLLLSLDQTLKISDFGVAEQLDLFAPDDTCTTGQGSPAFQPPEIANG
HETFAGFKVDIWSSGVTLYNLATGQYPFEGDNIYRLLENIGRGQWEAPAW
LYEMDADFANLILGMLQADPSKRLSLQEIRHDTWFRSAPVKTGPPIPIPP
LKGDKYRNSTVIPYLEAYHYGTQEEDVYFTEHDVNQELARQAAAAASEIR
AKQSAAALAACHTYEPPSTSAAAASNSLGNGSREEAPVKKKGSALKRRAK
KLTSCISVRKLSHCRTSASFLDH
BO04825.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lkb1-PJ | 567 | CG9374-PJ | 1..567 | 1..567 | 2982 | 100 | Plus |
lkb1-PD | 567 | CG9374-PD | 1..567 | 1..567 | 2982 | 100 | Plus |
lkb1-PC | 567 | CG9374-PC | 1..567 | 1..567 | 2982 | 100 | Plus |
lkb1-PB | 567 | CG9374-PB | 1..567 | 1..567 | 2982 | 100 | Plus |
lkb1-PA | 567 | CG9374-PA | 1..567 | 1..567 | 2982 | 100 | Plus |