Clone BO04825 Report

Search the DGRC for BO04825

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:25
Vector:pDNR-Dual
Associated Gene/Transcriptlkb1-RE
Protein status:BO04825.pep: Imported from assembly
Sequenced Size:1735

Clone Sequence Records

BO04825.5prime Sequence

730 bp (294 high quality bases) assembled on 2005-09-08

> BO04825.5prime
CAGTCGACATGCAATGTTCTAGCTCTCGGCCAGTCGGAGGTAAAGCAGCC
GGTGGAGCATAAGCAGGAGGGGCAGGAGCAACTGGCCAGATGACTGTGAC
CACCATGGAGGCACAGGTCAAGGCAGCACACCATCATCATCTACACCATC
CCACGGGCGGAGGGGCCCAGCTCAAGGTGGAGGAGGAGGAGCCGGATCCT
GTTGAGGACGAGATGACCGTACTGCTGGCCAATAAGAACTTTCACTATGA
CGTCTCCTCCTATCTGGACGACGACGCTTTTGTGGAGCTCAAAGAAGACA
CCGCCCAAGCGGATGATGCGGGCTCGGGCGTTGGCTTCTACAATCCGGAT
GAACTGCTGCTCGATGACCAGCCACATCCGCAAGTCACGTGGCTGGACGA
CGACGAGATCGAGACGCTCGATCGCGTGACGCTGGACATGGGTAATATGT
TCTTCAGTCGCGTCGACAGCCAGGATGTCATCTTATCAGCAGAAAAAGAG
CAGCATTAAGATGGTGGGCAAGTACATAATGGGCGATGTTCTCGGCGAGG
GATCGTACGGCAAGGTGAAGGAGGCCATGAACTCGGAGAACCTGTGCCGC
CTGGCCGTCAAGATCCTGACTAAGGGGAACTTGCGCCGGATTCCCAACGG
TCAACAGAACGTCCCCCGCGAGATCGCCTTGCTGAAGCACCTGAAGCATC
AACATGTCGTGGAGCTGGTCCATGTTTTGT

BO04825.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9374-PE 1704 lkb1-RE 1..467 9..475 2135 98.2 Plus
CG9374-PF 1704 lkb1-RF 1..467 9..475 2135 98.2 Plus
CG9374-PH 1704 lkb1-RH 1..467 9..475 2135 98.2 Plus
CG9374-PI 1704 lkb1-RI 1..467 9..475 2135 98.2 Plus
CG9374-PA 1704 lkb1-RA 1..467 9..475 2135 98.2 Plus
CG9374-PB 1704 lkb1-RB 1..467 9..475 2135 98.2 Plus
CG9374-PC 1704 lkb1-RC 1..467 9..475 2135 98.2 Plus
CG9374-PD 1704 lkb1-RD 1..467 9..475 2135 98.2 Plus
CG9374-PE 1704 lkb1-RE 475..653 484..662 745 96.6 Plus
CG9374-PF 1704 lkb1-RF 475..653 484..662 745 96.6 Plus
CG9374-PH 1704 lkb1-RH 475..653 484..662 745 96.6 Plus
CG9374-PI 1704 lkb1-RI 475..653 484..662 745 96.6 Plus
CG9374-PA 1704 lkb1-RA 475..653 484..662 745 96.6 Plus
CG9374-PB 1704 lkb1-RB 475..653 484..662 745 96.6 Plus
CG9374-PC 1704 lkb1-RC 475..653 484..662 745 96.6 Plus
CG9374-PD 1704 lkb1-RD 475..653 484..662 745 96.6 Plus
CG9374-PE 1704 lkb1-RE 658..721 667..730 245 95.3 Plus
CG9374-PF 1704 lkb1-RF 658..721 667..730 245 95.3 Plus
CG9374-PH 1704 lkb1-RH 658..721 667..730 245 95.3 Plus
CG9374-PI 1704 lkb1-RI 658..721 667..730 245 95.3 Plus
CG9374-PA 1704 lkb1-RA 658..721 667..730 245 95.3 Plus
CG9374-PB 1704 lkb1-RB 658..721 667..730 245 95.3 Plus
CG9374-PC 1704 lkb1-RC 658..721 667..730 245 95.3 Plus
CG9374-PD 1704 lkb1-RD 658..721 667..730 245 95.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
lkb1-RJ 2487 CG9374-RJ 351..1071 9..730 3255 96.8 Plus
lkb1-RD 2422 CG9374-RD 345..1065 9..730 3255 96.8 Plus
lkb1-RC 2391 CG9374-RC 339..1059 9..730 3255 96.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13677110..13677830 9..730 3230 96.8 Plus
Blast to na_te.dros performed on 2015-02-12 01:12:03 has no hits.

BO04825.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:47 Download gff for BO04825.5prime
Subject Subject Range Query Range Percent Splice Strand
lkb1-PH 1..721 9..730 96   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:30 Download gff for BO04825.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9374-PE 1..721 9..730 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:16 Download gff for BO04825.5prime
Subject Subject Range Query Range Percent Splice Strand
lkb1-RC 335..1059 3..730 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:09:08 Download gff for BO04825.5prime
Subject Subject Range Query Range Percent Splice Strand
lkb1-RC 335..1059 3..730 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:09:08 Download gff for BO04825.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13677106..13677830 3..730 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:16 Download gff for BO04825.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9502828..9503552 3..730 96   Plus

BO04825.complete Sequence

1735 bp assembled on 2008-11-10

GenBank Submission: KX797767

> BO04825.complete
GAAGTTATCAGTCGACATGCAATGTTCTAGCTCTCGGCCAGTCGGAGGTA
AAGCAGCCGGTGGAGCAGAAGCAGGAGGGGCAGGAGCAACAGGCCAGATG
ACTGTGACCACCATGGAGGCACAGGTCAAGGCAGCACACCATCATCATCT
ACACCATCCCACGGGCGGAGGGGCCCAGCACAAGGTGGAGGAGGAGGAGC
CGGATCCTGTTGAGGACGAGATGACCGTACTGCTGGCCAATAAGAACTTT
CACTATGACGTCGCCTCCGATCTGGACGACGACGCTTTTGTGGAGCTCAA
AGAAGACACCGCCCAAGCGGATGATGCGGGCGCGGGCGTTGGCTTCTACA
ATCCGGATGAACTGCTGCTCGATGACCAGCCACATCCGCAAGTCACGTGG
CTGGACGACGACGAGATCGAGACGCTCGATCGCGTGACGCTGGACATGGG
TAATATGTTCTTCAATCGCGTCGACAGCCAGGACATCATCTATCAGCAGA
AAAAGAAGAGCATTAAGATGGTGGGCAAGTACATAATGGGCGATGTTCTC
GGCGAGGGATCGTACGGCAAGGTGAAGGAGGCCATGAACTCGGAGAACCT
GTGCCGCCTGGCCGTCAAGATCCTGACTAAGCGGAAGTTGCGCCGGATTC
CCAACGGCGAACAGAACGTAACGCGCGAGATCGCCTTGCTGAAGCAGCTG
AAGCATCGACATGTCGTGGAGCTGGTCGATGTTTTGTACAACGAGGAGAA
GCAGAAAATGTACTTGGTCATGGAGTACTGTGTCGGCGGGCTGCAGGAGA
TGATTGACTATCAGCCAGACAAGCGGATGCCGCTGTTTCAGGCGCACGGT
TACTTCAAACAGCTAGTCGACGGCCTGGAGTACTTGCACAGCTGCCGGGT
CATCCACAAGGATATCAAGCCAGGCAACCTGCTGCTCTCCCTGGATCAAA
CGCTGAAGATATCCGACTTCGGTGTGGCGGAGCAACTGGATCTGTTCGCA
CCTGACGACACATGCACGACGGGCCAAGGTTCTCCGGCCTTCCAGCCACC
GGAGATTGCCAACGGACACGAGACGTTCGCCGGCTTCAAGGTGGACATCT
GGTCCAGCGGAGTGACTCTCTACAATTTGGCCACTGGACAGTATCCCTTC
GAGGGCGACAATATCTACCGACTGCTGGAGAACATCGGGCGAGGTCAGTG
GGAGGCGCCCGCGTGGCTATACGAAATGGACGCGGACTTTGCCAACCTGA
TTCTCGGCATGCTTCAGGCTGATCCCAGTAAACGCCTCTCTCTGCAGGAA
ATACGCCACGACACTTGGTTCCGATCCGCACCGGTTAAGACCGGCCCACC
GATACCCATTCCCCCCCTGAAGGGTGACAAATACCGCAACTCCACGGTGA
TACCTTACTTGGAAGCTTACCACTACGGCACCCAGGAGGAGGATGTCTAC
TTTACAGAACACGACGTAAATCAGGAGCTCGCCCGCCAAGCGGCAGCTGC
TGCCTCCGAAATTCGGGCCAAACAGTCGGCGGCAGCCCTAGCCGCCTGCC
ACACCTACGAACCGCCCTCCACAAGTGCCGCAGCCGCCAGCAATTCGCTG
GGCAACGGTAGCAGAGAGGAGGCGCCCGTCAAGAAGAAGGGATCGGCACT
GAAGAGGCGCGCCAAGAAGCTGACGTCCTGCATCTCCGTGCGCAAGCTGA
GCCACTGCCGAACTTCGGCAAGCTTTCTAGACCAT

BO04825.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
lkb1-RJ 1704 CG9374-PJ 1..1701 17..1717 8490 99.9 Plus
lkb1-RD 1704 CG9374-PD 1..1701 17..1717 8490 99.9 Plus
lkb1-RC 1704 CG9374-PC 1..1701 17..1717 8490 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
lkb1-RJ 2487 CG9374-RJ 351..2051 17..1717 8490 99.9 Plus
lkb1-RD 2422 CG9374-RD 345..2045 17..1717 8490 99.9 Plus
lkb1-RC 2391 CG9374-RC 339..2039 17..1717 8490 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13677110..13678212 17..1119 5500 99.9 Plus
3R 32079331 3R 13678750..13678994 1473..1717 1225 100 Plus
3R 32079331 3R 13678279..13678473 1120..1314 975 100 Plus
3R 32079331 3R 13678535..13678692 1315..1472 790 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:44:34 has no hits.

BO04825.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:21 Download gff for BO04825.complete
Subject Subject Range Query Range Percent Splice Strand
lkb1-RH 475..2184 11..1723 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:37 Download gff for BO04825.complete
Subject Subject Range Query Range Percent Splice Strand
lkb1-RC 339..2039 17..1719 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:07 Download gff for BO04825.complete
Subject Subject Range Query Range Percent Splice Strand
lkb1-RH 479..2179 17..1719 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:28 Download gff for BO04825.complete
Subject Subject Range Query Range Percent Splice Strand
lkb1-RC 339..2039 17..1719 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:28 Download gff for BO04825.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13678750..13678994 1473..1719 99   Plus
3R 13678279..13678473 1120..1314 100 -> Plus
3R 13678535..13678692 1315..1472 100 -> Plus
3R 13677110..13678212 17..1119 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:37 Download gff for BO04825.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9502832..9503934 17..1119 99 -> Plus
arm_3R 9504001..9504195 1120..1314 100 -> Plus
arm_3R 9504257..9504414 1315..1472 100 -> Plus
arm_3R 9504472..9504716 1473..1719 99   Plus

BO04825.pep Sequence

Translation from 16 to 1735

> BO04825.pep
MQCSSSRPVGGKAAGGAEAGGAGATGQMTVTTMEAQVKAAHHHHLHHPTG
GGAQHKVEEEEPDPVEDEMTVLLANKNFHYDVASDLDDDAFVELKEDTAQ
ADDAGAGVGFYNPDELLLDDQPHPQVTWLDDDEIETLDRVTLDMGNMFFN
RVDSQDIIYQQKKKSIKMVGKYIMGDVLGEGSYGKVKEAMNSENLCRLAV
KILTKRKLRRIPNGEQNVTREIALLKQLKHRHVVELVDVLYNEEKQKMYL
VMEYCVGGLQEMIDYQPDKRMPLFQAHGYFKQLVDGLEYLHSCRVIHKDI
KPGNLLLSLDQTLKISDFGVAEQLDLFAPDDTCTTGQGSPAFQPPEIANG
HETFAGFKVDIWSSGVTLYNLATGQYPFEGDNIYRLLENIGRGQWEAPAW
LYEMDADFANLILGMLQADPSKRLSLQEIRHDTWFRSAPVKTGPPIPIPP
LKGDKYRNSTVIPYLEAYHYGTQEEDVYFTEHDVNQELARQAAAAASEIR
AKQSAAALAACHTYEPPSTSAAAASNSLGNGSREEAPVKKKGSALKRRAK
KLTSCISVRKLSHCRTSASFLDH

BO04825.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
lkb1-PJ 567 CG9374-PJ 1..567 1..567 2982 100 Plus
lkb1-PD 567 CG9374-PD 1..567 1..567 2982 100 Plus
lkb1-PC 567 CG9374-PC 1..567 1..567 2982 100 Plus
lkb1-PB 567 CG9374-PB 1..567 1..567 2982 100 Plus
lkb1-PA 567 CG9374-PA 1..567 1..567 2982 100 Plus