Clone Sequence Records
BO04827.3prime Sequence
958 bp (832 high quality bases) assembled on 2005-12-02
> BO04827.3prime
ATGGTCTAGAAAGCTTGCAGATATAGTACAGTCGCAGCACATCAGTGAGT
AGTACAAGCATTTAACGACTTTCTCATCGTTGTCATCGTACTCCTTGCGA
TTCAATTTGGCCTTGTCATTGTCATAGCCTAACGATTTGGCATCCAACTG
GTCGGCGGCCAGGCCCTCCACCTTTTTGGACATCTTTCGCTTATTCGCAT
GTATCAGTTCGTTGGTGTTTCGCTGTCCCACCATTTCGTCGATCCAATCG
AAGTCTGTGGCGTTTCCCTGAAACCTGGTTAAACTGGAAATGGTTTCGAT
CGAATTGATATCCTCCTGATTGTTGTTGTGGTTCTTATATCTACTTTTCT
GTGGCGTTGTTTGCTGGGAATGTGATGCGGGCGGCGACGAGCCCGGCTTA
TGATTAGCCAGTGGCGAAGAATCGGTTGCTATCGATGCTGTGGTTCCCGC
AGAGCTATTTAGCACCACATCGGTGTCCTGTGCTGCTGGAAAACTTGGCA
CCTTCGGCAAATCCTCGGGGCTTACAAAGTTGTGCAAGTCCTGTATTACA
ACGGTGGTGATCACGCTGGGCGAAGTCATGGCTCGCGTGGATGCGGTTGC
AGTCTCGGAAGTAGGACTATACGGGATCGGTGAGTTCGGGCTCACAGGCG
TAGTCGGCAGTGTGGCAGTCTCCGAAACGATGGCCAAGTCCTCAGAGGAT
GCTCTATCGCTGTTTGCGCATCCTTGAACCAGCGAACAGGTGGCCACAAT
GCTCAGCGACGATGATGGTGAGTTGGCAGACAAATCGGTGGAGGGAAAAT
CAATCAGCTCGGCCTGAGCCTTGCTGCCGCCCAGGGACATACTTCGCTCT
TTTTCTGTGGACCCGAGTACGAGATATGCTTGTTGGTGGCATAAAACGAC
CCTTGGAATGGGGACTTCGGCCCGGTATCACAATATGCGCATACCGCTCG
GTTTGCTT
BO04827.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9992-PA | 969 | CG9992-RA | 152..966 | 833..19 | 4075 | 100 | Minus |
| CG9992-PD | 969 | CG9992-RD | 152..966 | 833..19 | 4075 | 100 | Minus |
| CG9992-PE | 969 | CG9992-RE | 152..966 | 833..19 | 4075 | 100 | Minus |
| CG9992-PC | 969 | CG9992-RC | 152..966 | 833..19 | 4075 | 100 | Minus |
| CG9992-PB | 564 | CG9992-RB | 1..561 | 579..19 | 2805 | 100 | Minus |
| CG9992-PA | 969 | CG9992-RA | 92..146 | 892..838 | 275 | 100 | Minus |
| CG9992-PD | 969 | CG9992-RD | 92..146 | 892..838 | 275 | 100 | Minus |
| CG9992-PE | 969 | CG9992-RE | 92..146 | 892..838 | 275 | 100 | Minus |
| CG9992-PC | 969 | CG9992-RC | 92..146 | 892..838 | 275 | 100 | Minus |
| CG9992-PA | 969 | CG9992-RA | 24..53 | 958..929 | 150 | 100 | Minus |
| CG9992-PD | 969 | CG9992-RD | 24..53 | 958..929 | 150 | 100 | Minus |
| CG9992-PE | 969 | CG9992-RE | 24..53 | 958..929 | 150 | 100 | Minus |
| CG9992-PC | 969 | CG9992-RC | 24..53 | 958..929 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9992-RC | 1340 | CG9992-RC | 91..1033 | 958..19 | 4580 | 99.4 | Minus |
| CG9992-RE | 1380 | CG9992-RE | 131..1073 | 958..19 | 4580 | 99.4 | Minus |
| CG9992-RD | 1608 | CG9992-RD | 359..1301 | 958..19 | 4580 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16382261..16382565 | 19..323 | 1510 | 99.7 | Plus |
| X | 23542271 | X | 16382906..16383167 | 535..796 | 1310 | 100 | Plus |
| X | 23542271 | X | 16382624..16382844 | 315..535 | 1105 | 100 | Plus |
| X | 23542271 | X | 16383324..16383488 | 797..958 | 615 | 95.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:58:54 has no hits.
BO04827.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:50 Download gff for
BO04827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-PC | 24..969 | 15..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:33 Download gff for
BO04827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-PA | 24..969 | 15..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:28 Download gff for
BO04827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-RD | 359..1304 | 15..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:02 Download gff for
BO04827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-RD | 359..1304 | 15..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:02 Download gff for
BO04827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16382257..16382557 | 15..315 | 99 | <- | Plus |
| X | 16382625..16382843 | 316..534 | 100 | <- | Plus |
| X | 16382906..16383167 | 535..796 | 100 | <- | Plus |
| X | 16383324..16383488 | 797..958 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:28 Download gff for
BO04827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16276939..16277200 | 535..796 | 100 | <- | Plus |
| arm_X | 16276290..16276590 | 15..315 | 99 | <- | Plus |
| arm_X | 16276658..16276876 | 316..534 | 100 | <- | Plus |
| arm_X | 16277357..16277521 | 797..958 | 96 | | Plus |
BO04827.5prime Sequence
918 bp (842 high quality bases) assembled on 2005-11-29
> BO04827.5prime
GAAGTTATCAGTCGACATGGCTTCCAACTCAACGAAGAAAAGCAAACCGA
GCGGTATGCGCATATTGTGGATACCGGGCCGAAAGTCCCATTCCAAGGGT
CGTTTTAATGCCACCAACAAGCATATCTCGTACTCGGGTCCACAGAAAAA
GAGCGAAGTATGGTCCTTGGGCGGCAGCAAGGCTCAGGCCGAGCTGATTG
ATTTTCCCTCCACCGATTTGTCTGCCAACTCACCATCATCGTCGCTGAGC
ATTGTGGCCACCTGTTCGCTGGTTCAAGGATGCGCAAACAGCGATAGAGC
ATCCTCTGAGGACTTGGCCATCGTTTCGGAGACTGCCACACTGCCGACTA
CGCCTGTGAGCCCGAACTCACCGATCCCGTATAGTCCTACTTCCGAGACT
GCAACCGCATCCACGCGAGCCATGACTTCGCCCAGCGTGATCACCACCGT
TGTAATACAGGACTTGCACAACTTTGTAAGCCCCGAGGATTTGCCGAAGG
TGCCAAGTTTTCCAGCAGCACAGGACACCGATGTGGTGCTAAATAGCTCT
GCGGGAACCACAGCATCGATAGCAACCGATTCTTCGCCACTGGCTAATCA
TAAGCCGGGCTCGTCGCCGCCCGCATCACATTCCCAGCAAACAACGCCAC
AGAAAAGTAGATATAAGAACCACAACAACAATCAGGAGGATATCAATTCG
ATCGAAACCATTTCCAGTTTAACCAGGTTTCAGGGAAACGCCACAGACTT
CGATTGGATCGACGAAATGGTGGGACAGCGAAACACCAACGAACTGATAC
ATGCGAATAAGCGAAAGATGTCCAAAAAGGTGGAGGGCCTGGCCGCCGAC
CAGTTGGATGCCAAATCGTTAGGCTATGACAATGACAAGGCCAAATTGAA
TCGCAAGGAGTACGATGA
BO04827.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9992-PA | 969 | CG9992-RA | 1..902 | 17..918 | 4510 | 100 | Plus |
| CG9992-PD | 969 | CG9992-RD | 1..902 | 17..918 | 4510 | 100 | Plus |
| CG9992-PE | 969 | CG9992-RE | 1..902 | 17..918 | 4510 | 100 | Plus |
| CG9992-PC | 969 | CG9992-RC | 1..902 | 17..918 | 4510 | 100 | Plus |
| CG9992-PB | 564 | CG9992-RB | 1..497 | 422..918 | 2485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9992-RC | 1340 | CG9992-RC | 68..969 | 17..918 | 4510 | 100 | Plus |
| CG9992-RE | 1380 | CG9992-RE | 108..1009 | 17..918 | 4510 | 100 | Plus |
| CG9992-RD | 1608 | CG9992-RD | 336..1237 | 17..918 | 4510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16382906..16383167 | 466..205 | 1310 | 100 | Minus |
| X | 23542271 | X | 16382325..16382565 | 918..678 | 1190 | 99.6 | Minus |
| X | 23542271 | X | 16382624..16382844 | 686..466 | 1105 | 100 | Minus |
| X | 23542271 | X | 16383324..16383511 | 204..17 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:23:28 has no hits.
BO04827.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:51 Download gff for
BO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-PD | 1..901 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:35 Download gff for
BO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-PC | 1..901 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:53 Download gff for
BO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-RD | 332..1236 | 12..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:13:33 Download gff for
BO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-RD | 332..1236 | 12..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:13:33 Download gff for
BO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16383324..16383515 | 12..204 | 98 | | Minus |
| X | 16382326..16382557 | 686..917 | 100 | <- | Minus |
| X | 16382625..16382843 | 467..685 | 100 | <- | Minus |
| X | 16382906..16383167 | 205..466 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:53 Download gff for
BO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16276359..16276590 | 686..917 | 100 | <- | Minus |
| arm_X | 16276658..16276876 | 467..685 | 100 | <- | Minus |
| arm_X | 16276939..16277200 | 205..466 | 100 | <- | Minus |
| arm_X | 16277357..16277548 | 12..204 | 98 | | Minus |
BO04827.complete Sequence
1000 bp (1000 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629879
> BO04827.complete
GAAGTTATCAGTCGACATGGCTTCCAACTCAACGAAGAAAAGCAAACCGA
GCGGTATGCGCATATTGTGGATACCGGGCCGAAAGTCCCATTCCAAGGGT
CGTTTTAATGCCACCAACAAGCATATCTCGTACTCGGGTCCACAGAAAAA
GAGCGAAGTATGGTCCTTGGGCGGCAGCAAGGCTCAGGCCGAGCTGATTG
ATTTTCCCTCCACCGATTTGTCTGCCAACTCACCATCATCGTCGCTGAGC
ATTGTGGCCACCTGTTCGCTGGTTCAAGGATGCGCAAACAGCGATAGAGC
ATCCTCTGAGGACTTGGCCATCGTTTCGGAGACTGCCACACTGCCGACTA
CGCCTGTGAGCCCGAACTCACCGATCCCGTATAGTCCTACTTCCGAGACT
GCAACCGCATCCACGCGAGCCATGACTTCGCCCAGCGTGATCACCACCGT
TGTAATACAGGACTTGCACAACTTTGTAAGCCCCGAGGATTTGCCGAAGG
TGCCAAGTTTTCCAGCAGCACAGGACACCGATGTGGTGCTAAATAGCTCT
GCGGGAACCACAGCATCGATAGCAACCGATTCTTCGCCACTGGCTAATCA
TAAGCCGGGCTCGTCGCCGCCCGCATCACATTCCCAGCAAACAACGCCAC
AGAAAAGTAGATATAAGAACCACAACAACAATCAGGAGGATATCAATTCG
ATCGAAACCATTTCCAGTTTAACCAGGTTTCAGGGAAACGCCACAGACTT
CGATTGGATCGACGAAATGGTGGGACAGCGAAACACCAACGAACTGATAC
ATGCGAATAAGCGAAAGATGTCCAAAAAGGTGGAGGGCCTGGCCGCCGAC
CAGTTGGATGCCAAATCGTTAGGCTATGACAATGACAAGGCCAAATTGAA
TCGCAAGGAGTACGATGACAACGATGAGAAAGTCGTTAAATGCTTGTACT
ACTCACTGATGTGCTGCGACTGTACTATATCTGCAAGCTTTCTAGACCAT
BO04827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9992-RC | 969 | CG9992-PC | 1..966 | 17..982 | 4830 | 100 | Plus |
| CG9992-RE | 969 | CG9992-PE | 1..966 | 17..982 | 4830 | 100 | Plus |
| CG9992-RD | 969 | CG9992-PD | 1..966 | 17..982 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9992-RC | 1340 | CG9992-RC | 68..1033 | 17..982 | 4830 | 100 | Plus |
| CG9992-RE | 1380 | CG9992-RE | 108..1073 | 17..982 | 4830 | 100 | Plus |
| CG9992-RD | 1608 | CG9992-RD | 336..1301 | 17..982 | 4830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16382261..16382565 | 982..678 | 1510 | 99.7 | Minus |
| X | 23542271 | X | 16382906..16383167 | 466..205 | 1310 | 100 | Minus |
| X | 23542271 | X | 16382624..16382844 | 686..466 | 1105 | 100 | Minus |
| X | 23542271 | X | 16383324..16383511 | 204..17 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:35:02 has no hits.
BO04827.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:56 Download gff for
BO04827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-RE | 1..969 | 17..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:34 Download gff for
BO04827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-RE | 108..1076 | 17..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:26 Download gff for
BO04827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-RD | 336..1301 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:56 Download gff for
BO04827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-RE | 108..1076 | 17..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:18 Download gff for
BO04827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-RD | 336..1301 | 17..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:18 Download gff for
BO04827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16382906..16383167 | 205..466 | 100 | <- | Minus |
| X | 16383324..16383511 | 17..204 | 100 | | Minus |
| X | 16382259..16382557 | 686..984 | 99 | <- | Minus |
| X | 16382625..16382843 | 467..685 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:26 Download gff for
BO04827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16276292..16276590 | 686..984 | 99 | <- | Minus |
| arm_X | 16276658..16276876 | 467..685 | 100 | <- | Minus |
| arm_X | 16276939..16277200 | 205..466 | 100 | <- | Minus |
| arm_X | 16277357..16277544 | 17..204 | 100 | | Minus |
BO04827.pep Sequence
Translation from 16 to 1000
> BO04827.pep
MASNSTKKSKPSGMRILWIPGRKSHSKGRFNATNKHISYSGPQKKSEVWS
LGGSKAQAELIDFPSTDLSANSPSSSLSIVATCSLVQGCANSDRASSEDL
AIVSETATLPTTPVSPNSPIPYSPTSETATASTRAMTSPSVITTVVIQDL
HNFVSPEDLPKVPSFPAAQDTDVVLNSSAGTTASIATDSSPLANHKPGSS
PPASHSQQTTPQKSRYKNHNNNQEDINSIETISSLTRFQGNATDFDWIDE
MVGQRNTNELIHANKRKMSKKVEGLAADQLDAKSLGYDNDKAKLNRKEYD
DNDEKVVKCLYYSLMCCDCTISASFLDH
BO04827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9992-PC | 322 | CG9992-PC | 1..322 | 1..322 | 1663 | 100 | Plus |
| CG9992-PE | 322 | CG9992-PE | 1..322 | 1..322 | 1663 | 100 | Plus |
| CG9992-PD | 322 | CG9992-PD | 1..322 | 1..322 | 1663 | 100 | Plus |
| CG9992-PA | 322 | CG9992-PA | 1..322 | 1..322 | 1663 | 100 | Plus |
| CG9992-PB | 187 | CG9992-PB | 1..187 | 136..322 | 978 | 100 | Plus |
