Clone BO04828 Report

Search the DGRC for BO04828

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptDsp1-RA
Protein status:BO04828.pep: validated full length
Sequenced Size:1189

Clone Sequence Records

BO04828.3prime Sequence

901 bp (826 high quality bases) assembled on 2005-12-02

> BO04828.3prime
ATGGTCTAGAAAGCTTGCTTGGTTCTCGTCATCATCTCCATCGCCGTCGT
CGTCGTCGTGCTGCTCTTCCAGCTGCTGGTGCTGCTGCTGGGCAGCGGCG
GCAAGTAACGCGGCTTTCTGTGCCTGCGCCTGCATCGACGCCTGCATCGA
CGGTGCGGACATGGCTATTTTCCCGCTCGTCTTGTACTCGGTCATCTCGC
GTTCATATCGAGCCTTGTCCCGCTCGGCCATCGACTCGTACTTCTGCTTG
ACCTCGGGATCCACATCGGACCACTTTCGTCCCAGCTCTTTGGCGATGTC
GCCCACTCCGAACTCGGGATTAAGTGCCTTCACCTTATTTCTCTCGTCAT
TGCAGAACCAGAAGAACGCAGACAATGAACGTTTTGGAGCATTGGGGTCC
TTGATCTGTTTCCTCTTCTTGCCGCGTCCCACAACCGCTCCCTTGGGCGG
CACATAGTTCTGCATTTCCGCCTCATATCGCTGCTTGTCCTTCTCGGCCA
TTTCGTGGAAGCGCTTCTTCTCCTTGTCCACCATTGTCTTCCACCGTTCG
GCGCACTTCCGCGAGAATTCGGCGAATATCACCGTCTCATCGGGATGCTT
CTTTTTGTGCTCCTCTCTGCAAGTTTGTACAAAGTATGCGTAGGCGGTCA
TTCGGCCTCTGGGCTTGGCATCGGCCTTGACTCTGCTCATGGGGCTCGCC
GAATTGATGACATTCTGTTGCTGCTGCTGCTGTTGCATCTGTTGTTGCTG
CTGGTGCTGTTGCTGCTGCTGCTGTTGTTGCTGCTGCTGTTGCTGCTGCT
GGTGCTGCAGTTGCGCCGCTGTATTAGCATCGACCTGTCCCTGATTGGCG
GCCGAATACCACCACTGGGAGCCGGGTACGGCTGCTGCTGCTGCTGCCTG
T

BO04828.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12223-PB 1158 Dsp1-RB 273..1155 901..19 4315 99.5 Minus
CG12223-PA 1158 Dsp1-RA 273..1155 901..19 4315 99.5 Minus
CG12223-PC 1158 Dsp1-RC 273..1155 901..19 4315 99.5 Minus
CG12223-PD 1161 Dsp1-RD 276..1158 901..19 4315 99.5 Minus
CG12223-PE 1182 Dsp1-RE 297..1179 901..19 4315 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsp1-RG 2359 CG12223-RG 397..1279 901..19 4355 99.5 Minus
Dsp1-RF 2205 CG12223-RF 356..1238 901..19 4355 99.5 Minus
Dsp1-RE 4240 CG12223-RE 538..1420 901..19 4355 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16336539..16336743 901..697 980 98.5 Minus
X 23542271 X 16337625..16337804 198..19 900 100 Minus
X 23542271 X 16337381..16337556 373..198 880 100 Minus
X 23542271 X 16337084..16337251 539..372 840 100 Minus
X 23542271 X 16336850..16337009 697..538 785 99.4 Minus
Blast to na_te.dros performed 2015-02-12 06:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6831 132..56 123 65.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6840 101..59 109 75 Minus

BO04828.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:52 Download gff for BO04828.3prime
Subject Subject Range Query Range Percent Splice Strand
Dsp1-PE 297..1182 18..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:36 Download gff for BO04828.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12223-PE 297..1182 18..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:20 Download gff for BO04828.3prime
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RE 538..1427 10..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:12:59 Download gff for BO04828.3prime
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RE 538..1427 10..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:12:59 Download gff for BO04828.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16337086..16337249 374..537 100 -> Minus
X 16337381..16337555 199..373 100 -> Minus
X 16337625..16337811 10..198 97   Minus
X 16336539..16336743 697..901 98 -> Minus
X 16336851..16337009 538..696 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:20 Download gff for BO04828.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16231119..16231282 374..537 100 -> Minus
arm_X 16231414..16231588 199..373 100 -> Minus
arm_X 16230572..16230776 697..901 98 -> Minus
arm_X 16230884..16231042 538..696 99 -> Minus
arm_X 16231658..16231844 10..198 97   Minus

BO04828.5prime Sequence

883 bp (772 high quality bases) assembled on 2005-11-29

> BO04828.5prime
GAAGTTATCAGTCGACATGGAACACTTTCATCAAATACAGCAATTGGCTG
CTCAGCAACAACAACAAGTACAACAGCAACAGTTGCAACAACACCAGGTG
GTCGTCCAGCAGAATCAGCAGCAGGCGCACCAGAACAGCTCCAATACCAC
AGCCGGCGTGGGCACCCAACAGCTGTTCACATACAAAATGGCCAGCAGTT
TTCCGAATCCGGCCACGACGATGGCCCAAGTGGTGGCCACATCGAACGCA
GCCGGCACCACGGGCTATGATTATCGTCTAAATATGGCACAGGCAGCAGC
AGCAGCAGCCGTACCCGGCTCCCAGTGGTGGTATTCGGCCGCCAATCAGG
GACAGGTCGATGCTAATACAGCGGCGCAACTGCAGCACCAGCAGCAGCAA
CAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCACCAGCAGCAACAACA
GATGCAACAGCAGCAGCAGCAACAGAATGTCATCAATTCGGCGAGCCCCA
TGAGCAGAGTCAAGGCCGATGCCAAGCCCAGAGGCCGAATGACCGCCTAC
GCATACTTTGTACAAACTTGCAGAGAGGAGCACAAAAAGAAGCATCCCGA
TGAGACGGTGATATTCGCCGAATTCTCGCGGAAGTGCGCCGAACGGTGGA
AGACAATGGTGGACAAGGAGAAGAAGCGCTTCCACGAAATGGCCGAGAAG
GACAAGCAGCGATATGAGGCGGAAATGCAGAACTATGTGCCGCCCAAGGG
AGCGGTTGTGGGACGCGGCAAGAAGAGGAAACAGATCAAGGACCCCAATG
CTCCAAAACGTTCATTGTCTGCGTTCTTCTGGTTCTGCAATGACGAGAGA
AATAAGGTGAAGGCACTTAATCCCGAGTTCGGA

BO04828.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12223-PB 1158 Dsp1-RB 1..867 17..883 4235 99.5 Plus
CG12223-PA 1158 Dsp1-RA 1..867 17..883 4235 99.5 Plus
CG12223-PC 1158 Dsp1-RC 1..867 17..883 4235 99.5 Plus
CG12223-PE 1182 Dsp1-RE 46..891 38..883 4130 99.5 Plus
CG12223-PD 1161 Dsp1-RD 25..870 38..883 4130 99.5 Plus
CG12223-PE 1182 Dsp1-RE 1..27 17..43 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsp1-RC 4511 CG12223-RC 718..1584 17..883 4275 99.5 Plus
Dsp1-RA 3990 CG12223-RA 197..1063 17..883 4275 99.5 Plus
Dsp1-RB 3915 CG12223-RB 122..988 17..883 4275 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16336288..16336743 38..493 2235 99.3 Plus
X 23542271 X 16337084..16337251 651..818 840 100 Plus
X 23542271 X 16336850..16337009 493..652 785 99.4 Plus
X 23542271 X 16337381..16337447 817..883 335 100 Plus
Blast to na_te.dros performed 2015-02-04 19:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2407..2854 21..477 336 56.8 Plus

BO04828.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:53 Download gff for BO04828.5prime
Subject Subject Range Query Range Percent Splice Strand
Dsp1-PA 1..866 17..882 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:37 Download gff for BO04828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12223-PC 1..866 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:48 Download gff for BO04828.5prime
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RB 117..987 9..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:35:03 Download gff for BO04828.5prime
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RB 117..987 9..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:35:03 Download gff for BO04828.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16334388..16334413 17..40 92 -> Plus
X 16336291..16336743 41..493 99 -> Plus
X 16336851..16337009 494..652 99 -> Plus
X 16337086..16337249 653..816 100 -> Plus
X 16337381..16337446 817..882 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:48 Download gff for BO04828.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16228421..16228446 17..40 92 -> Plus
arm_X 16230324..16230776 41..493 99 -> Plus
arm_X 16230884..16231042 494..652 99 -> Plus
arm_X 16231119..16231282 653..816 100 -> Plus
arm_X 16231414..16231479 817..882 100   Plus

BO04828.complete Sequence

1189 bp (1189 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629880

> BO04828.complete
GAAGTTATCAGTCGACATGGAACACTTTCATCAAATACAGCAATTGGCTG
CTCAGCAACAACAACAAGTACAACAGCAACAGTTGCAACAACACCAGGTG
GTCGTCCAGCAGAATCAGCAGCAGGCGCACCAGAACAGCTCCAATACCAC
AGCCGGCGTGGGCACCCAACAGCTGTTCACATACAAAATGGCCAGCAGTT
TTCCGAATCCGGCCACGACGATGGCCCAAGTGGTGGCCACATCGAACGCA
GCCGGCACCACGGGCTATGATTATCGTCTAAATATGGCACAGGCAGCAGC
AGCAGCAGCCGTACCCGGCTCCCAGTGGTGGTATTCGGCCGCCAATCAGG
GACAGGTCGATGCTAATACAGCGGCGCAACTGCAGCACCAGCAGCAGCAA
CAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCACCAGCAGCAACAACA
GATGCAACAGCAGCAGCAGCAACAGAATGTCATCAATTCGGCGAGCCCCA
TGAGCAGAGTCAAGGCCGATGCCAAGCCCAGAGGCCGAATGACCGCCTAC
GCATACTTTGTACAAACTTGCAGAGAGGAGCACAAAAAGAAGCATCCCGA
TGAGACGGTGATATTCGCCGAATTCTCGCGGAAGTGCGCCGAACGGTGGA
AGACAATGGTGGACAAGGAGAAGAAGCGCTTCCACGAAATGGCCGAGAAG
GACAAGCAGCGATATGAGGCGGAAATGCAGAACTATGTGCCGCCCAAGGG
AGCGGTTGTGGGACGCGGCAAGAAGAGGAAACAGATCAAGGACCCCAATG
CTCCAAAACGTTCATTGTCTGCGTTCTTCTGGTTCTGCAATGACGAGAGA
AATAAGGTGAAGGCACTTAATCCCGAGTTCGGAGTGGGCGACATCGCCAA
AGAGCTGGGACGAAAGTGGTCCGATGTGGATCCCGAGGTCAAGCAGAAGT
ACGAGTCGATGGCCGAGCGGGACAAGGCTCGATATGAACGCGAGATGACC
GAGTACAAGACGAGCGGGAAAATAGCCATGTCCGCACCGTCGATGCAGGC
GTCGATGCAGGCGCAGGCACAGAAAGCCGCGTTACTTGCCGCCGCTGCCC
AGCAGCAGCACCAGCAGCTGGAAGAGCAGCACGACGACGACGACGGCGAT
GGAGATGATGACGAGAACCAAGCAAGCTTTCTAGACCAT

BO04828.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsp1-RC 1158 CG12223-PC 1..1155 17..1171 5715 99.7 Plus
Dsp1-RA 1158 CG12223-PA 1..1155 17..1171 5715 99.7 Plus
Dsp1-RB 1158 CG12223-PB 1..1155 17..1171 5715 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsp1-RC 4511 CG12223-RC 718..1872 17..1171 5715 99.7 Plus
Dsp1-RA 3990 CG12223-RA 197..1351 17..1171 5715 99.7 Plus
Dsp1-RB 3915 CG12223-RB 122..1276 17..1171 5715 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16336288..16336743 38..493 2235 99.3 Plus
X 23542271 X 16337625..16337804 992..1171 900 100 Plus
X 23542271 X 16337381..16337556 817..992 880 100 Plus
X 23542271 X 16337084..16337251 651..818 840 100 Plus
X 23542271 X 16336850..16337009 493..652 785 99.4 Plus
Blast to na_te.dros performed 2014-11-27 20:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2407..2854 21..477 336 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6831 1058..1134 123 65.4 Plus

BO04828.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:57 Download gff for BO04828.complete
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RA 1..1158 17..1172 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:36 Download gff for BO04828.complete
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RC 713..1879 9..1180 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:50 Download gff for BO04828.complete
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RB 122..1276 17..1173 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:57 Download gff for BO04828.complete
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RA 192..1358 9..1180 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:17 Download gff for BO04828.complete
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RB 122..1276 17..1173 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:17 Download gff for BO04828.complete
Subject Subject Range Query Range Percent Splice Strand
X 16337381..16337555 817..991 100 -> Plus
X 16337625..16337804 992..1173 98   Plus
X 16334390..16334413 17..40 100 -> Plus
X 16336291..16336743 41..493 99 -> Plus
X 16336851..16337009 494..652 99 -> Plus
X 16337086..16337249 653..816 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:50 Download gff for BO04828.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16228423..16228446 17..40 100 -> Plus
arm_X 16230324..16230776 41..493 99 -> Plus
arm_X 16230884..16231042 494..652 99 -> Plus
arm_X 16231119..16231282 653..816 100 -> Plus
arm_X 16231414..16231588 817..991 100 -> Plus
arm_X 16231658..16231837 992..1173 98   Plus

BO04828.pep Sequence

Translation from 16 to 1189

> BO04828.pep
MEHFHQIQQLAAQQQQQVQQQQLQQHQVVVQQNQQQAHQNSSNTTAGVGT
QQLFTYKMASSFPNPATTMAQVVATSNAAGTTGYDYRLNMAQAAAAAAVP
GSQWWYSAANQGQVDANTAAQLQHQQQQQQQQQQQQQQQHQQQQQMQQQQ
QQQNVINSASPMSRVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIF
AEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGR
GKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRK
WSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIAMSAPSMQASMQAQ
AQKAALLAAAAQQQHQQLEEQHDDDDGDGDDDENQASFLDH

BO04828.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsp1-PC 385 CG12223-PC 1..385 1..385 2005 100 Plus
Dsp1-PA 385 CG12223-PA 1..385 1..385 2005 100 Plus
Dsp1-PB 385 CG12223-PB 1..385 1..385 2005 100 Plus
Dsp1-PG 386 CG12223-PG 1..386 1..385 1993 99.7 Plus
Dsp1-PD 386 CG12223-PD 1..386 1..385 1993 99.7 Plus