Clone Sequence Records
BO04828.3prime Sequence
901 bp (826 high quality bases) assembled on 2005-12-02
> BO04828.3prime
ATGGTCTAGAAAGCTTGCTTGGTTCTCGTCATCATCTCCATCGCCGTCGT
CGTCGTCGTGCTGCTCTTCCAGCTGCTGGTGCTGCTGCTGGGCAGCGGCG
GCAAGTAACGCGGCTTTCTGTGCCTGCGCCTGCATCGACGCCTGCATCGA
CGGTGCGGACATGGCTATTTTCCCGCTCGTCTTGTACTCGGTCATCTCGC
GTTCATATCGAGCCTTGTCCCGCTCGGCCATCGACTCGTACTTCTGCTTG
ACCTCGGGATCCACATCGGACCACTTTCGTCCCAGCTCTTTGGCGATGTC
GCCCACTCCGAACTCGGGATTAAGTGCCTTCACCTTATTTCTCTCGTCAT
TGCAGAACCAGAAGAACGCAGACAATGAACGTTTTGGAGCATTGGGGTCC
TTGATCTGTTTCCTCTTCTTGCCGCGTCCCACAACCGCTCCCTTGGGCGG
CACATAGTTCTGCATTTCCGCCTCATATCGCTGCTTGTCCTTCTCGGCCA
TTTCGTGGAAGCGCTTCTTCTCCTTGTCCACCATTGTCTTCCACCGTTCG
GCGCACTTCCGCGAGAATTCGGCGAATATCACCGTCTCATCGGGATGCTT
CTTTTTGTGCTCCTCTCTGCAAGTTTGTACAAAGTATGCGTAGGCGGTCA
TTCGGCCTCTGGGCTTGGCATCGGCCTTGACTCTGCTCATGGGGCTCGCC
GAATTGATGACATTCTGTTGCTGCTGCTGCTGTTGCATCTGTTGTTGCTG
CTGGTGCTGTTGCTGCTGCTGCTGTTGTTGCTGCTGCTGTTGCTGCTGCT
GGTGCTGCAGTTGCGCCGCTGTATTAGCATCGACCTGTCCCTGATTGGCG
GCCGAATACCACCACTGGGAGCCGGGTACGGCTGCTGCTGCTGCTGCCTG
T
BO04828.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12223-PB | 1158 | Dsp1-RB | 273..1155 | 901..19 | 4315 | 99.5 | Minus |
CG12223-PA | 1158 | Dsp1-RA | 273..1155 | 901..19 | 4315 | 99.5 | Minus |
CG12223-PC | 1158 | Dsp1-RC | 273..1155 | 901..19 | 4315 | 99.5 | Minus |
CG12223-PD | 1161 | Dsp1-RD | 276..1158 | 901..19 | 4315 | 99.5 | Minus |
CG12223-PE | 1182 | Dsp1-RE | 297..1179 | 901..19 | 4315 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsp1-RG | 2359 | CG12223-RG | 397..1279 | 901..19 | 4355 | 99.5 | Minus |
Dsp1-RF | 2205 | CG12223-RF | 356..1238 | 901..19 | 4355 | 99.5 | Minus |
Dsp1-RE | 4240 | CG12223-RE | 538..1420 | 901..19 | 4355 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16336539..16336743 | 901..697 | 980 | 98.5 | Minus |
X | 23542271 | X | 16337625..16337804 | 198..19 | 900 | 100 | Minus |
X | 23542271 | X | 16337381..16337556 | 373..198 | 880 | 100 | Minus |
X | 23542271 | X | 16337084..16337251 | 539..372 | 840 | 100 | Minus |
X | 23542271 | X | 16336850..16337009 | 697..538 | 785 | 99.4 | Minus |
Blast to na_te.dros performed 2015-02-12 06:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6831 | 132..56 | 123 | 65.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6840 | 101..59 | 109 | 75 | Minus |
BO04828.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:52 Download gff for
BO04828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-PE | 297..1182 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:36 Download gff for
BO04828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12223-PE | 297..1182 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:20 Download gff for
BO04828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RE | 538..1427 | 10..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:12:59 Download gff for
BO04828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RE | 538..1427 | 10..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:12:59 Download gff for
BO04828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16337086..16337249 | 374..537 | 100 | -> | Minus |
X | 16337381..16337555 | 199..373 | 100 | -> | Minus |
X | 16337625..16337811 | 10..198 | 97 | | Minus |
X | 16336539..16336743 | 697..901 | 98 | -> | Minus |
X | 16336851..16337009 | 538..696 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:20 Download gff for
BO04828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16231119..16231282 | 374..537 | 100 | -> | Minus |
arm_X | 16231414..16231588 | 199..373 | 100 | -> | Minus |
arm_X | 16230572..16230776 | 697..901 | 98 | -> | Minus |
arm_X | 16230884..16231042 | 538..696 | 99 | -> | Minus |
arm_X | 16231658..16231844 | 10..198 | 97 | | Minus |
BO04828.5prime Sequence
883 bp (772 high quality bases) assembled on 2005-11-29
> BO04828.5prime
GAAGTTATCAGTCGACATGGAACACTTTCATCAAATACAGCAATTGGCTG
CTCAGCAACAACAACAAGTACAACAGCAACAGTTGCAACAACACCAGGTG
GTCGTCCAGCAGAATCAGCAGCAGGCGCACCAGAACAGCTCCAATACCAC
AGCCGGCGTGGGCACCCAACAGCTGTTCACATACAAAATGGCCAGCAGTT
TTCCGAATCCGGCCACGACGATGGCCCAAGTGGTGGCCACATCGAACGCA
GCCGGCACCACGGGCTATGATTATCGTCTAAATATGGCACAGGCAGCAGC
AGCAGCAGCCGTACCCGGCTCCCAGTGGTGGTATTCGGCCGCCAATCAGG
GACAGGTCGATGCTAATACAGCGGCGCAACTGCAGCACCAGCAGCAGCAA
CAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCACCAGCAGCAACAACA
GATGCAACAGCAGCAGCAGCAACAGAATGTCATCAATTCGGCGAGCCCCA
TGAGCAGAGTCAAGGCCGATGCCAAGCCCAGAGGCCGAATGACCGCCTAC
GCATACTTTGTACAAACTTGCAGAGAGGAGCACAAAAAGAAGCATCCCGA
TGAGACGGTGATATTCGCCGAATTCTCGCGGAAGTGCGCCGAACGGTGGA
AGACAATGGTGGACAAGGAGAAGAAGCGCTTCCACGAAATGGCCGAGAAG
GACAAGCAGCGATATGAGGCGGAAATGCAGAACTATGTGCCGCCCAAGGG
AGCGGTTGTGGGACGCGGCAAGAAGAGGAAACAGATCAAGGACCCCAATG
CTCCAAAACGTTCATTGTCTGCGTTCTTCTGGTTCTGCAATGACGAGAGA
AATAAGGTGAAGGCACTTAATCCCGAGTTCGGA
BO04828.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12223-PB | 1158 | Dsp1-RB | 1..867 | 17..883 | 4235 | 99.5 | Plus |
CG12223-PA | 1158 | Dsp1-RA | 1..867 | 17..883 | 4235 | 99.5 | Plus |
CG12223-PC | 1158 | Dsp1-RC | 1..867 | 17..883 | 4235 | 99.5 | Plus |
CG12223-PE | 1182 | Dsp1-RE | 46..891 | 38..883 | 4130 | 99.5 | Plus |
CG12223-PD | 1161 | Dsp1-RD | 25..870 | 38..883 | 4130 | 99.5 | Plus |
CG12223-PE | 1182 | Dsp1-RE | 1..27 | 17..43 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsp1-RC | 4511 | CG12223-RC | 718..1584 | 17..883 | 4275 | 99.5 | Plus |
Dsp1-RA | 3990 | CG12223-RA | 197..1063 | 17..883 | 4275 | 99.5 | Plus |
Dsp1-RB | 3915 | CG12223-RB | 122..988 | 17..883 | 4275 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16336288..16336743 | 38..493 | 2235 | 99.3 | Plus |
X | 23542271 | X | 16337084..16337251 | 651..818 | 840 | 100 | Plus |
X | 23542271 | X | 16336850..16337009 | 493..652 | 785 | 99.4 | Plus |
X | 23542271 | X | 16337381..16337447 | 817..883 | 335 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 19:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2854 | 21..477 | 336 | 56.8 | Plus |
BO04828.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:53 Download gff for
BO04828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:37 Download gff for
BO04828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12223-PC | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:48 Download gff for
BO04828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RB | 117..987 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:35:03 Download gff for
BO04828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RB | 117..987 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:35:03 Download gff for
BO04828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16334388..16334413 | 17..40 | 92 | -> | Plus |
X | 16336291..16336743 | 41..493 | 99 | -> | Plus |
X | 16336851..16337009 | 494..652 | 99 | -> | Plus |
X | 16337086..16337249 | 653..816 | 100 | -> | Plus |
X | 16337381..16337446 | 817..882 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:48 Download gff for
BO04828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16228421..16228446 | 17..40 | 92 | -> | Plus |
arm_X | 16230324..16230776 | 41..493 | 99 | -> | Plus |
arm_X | 16230884..16231042 | 494..652 | 99 | -> | Plus |
arm_X | 16231119..16231282 | 653..816 | 100 | -> | Plus |
arm_X | 16231414..16231479 | 817..882 | 100 | | Plus |
BO04828.complete Sequence
1189 bp (1189 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629880
> BO04828.complete
GAAGTTATCAGTCGACATGGAACACTTTCATCAAATACAGCAATTGGCTG
CTCAGCAACAACAACAAGTACAACAGCAACAGTTGCAACAACACCAGGTG
GTCGTCCAGCAGAATCAGCAGCAGGCGCACCAGAACAGCTCCAATACCAC
AGCCGGCGTGGGCACCCAACAGCTGTTCACATACAAAATGGCCAGCAGTT
TTCCGAATCCGGCCACGACGATGGCCCAAGTGGTGGCCACATCGAACGCA
GCCGGCACCACGGGCTATGATTATCGTCTAAATATGGCACAGGCAGCAGC
AGCAGCAGCCGTACCCGGCTCCCAGTGGTGGTATTCGGCCGCCAATCAGG
GACAGGTCGATGCTAATACAGCGGCGCAACTGCAGCACCAGCAGCAGCAA
CAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCACCAGCAGCAACAACA
GATGCAACAGCAGCAGCAGCAACAGAATGTCATCAATTCGGCGAGCCCCA
TGAGCAGAGTCAAGGCCGATGCCAAGCCCAGAGGCCGAATGACCGCCTAC
GCATACTTTGTACAAACTTGCAGAGAGGAGCACAAAAAGAAGCATCCCGA
TGAGACGGTGATATTCGCCGAATTCTCGCGGAAGTGCGCCGAACGGTGGA
AGACAATGGTGGACAAGGAGAAGAAGCGCTTCCACGAAATGGCCGAGAAG
GACAAGCAGCGATATGAGGCGGAAATGCAGAACTATGTGCCGCCCAAGGG
AGCGGTTGTGGGACGCGGCAAGAAGAGGAAACAGATCAAGGACCCCAATG
CTCCAAAACGTTCATTGTCTGCGTTCTTCTGGTTCTGCAATGACGAGAGA
AATAAGGTGAAGGCACTTAATCCCGAGTTCGGAGTGGGCGACATCGCCAA
AGAGCTGGGACGAAAGTGGTCCGATGTGGATCCCGAGGTCAAGCAGAAGT
ACGAGTCGATGGCCGAGCGGGACAAGGCTCGATATGAACGCGAGATGACC
GAGTACAAGACGAGCGGGAAAATAGCCATGTCCGCACCGTCGATGCAGGC
GTCGATGCAGGCGCAGGCACAGAAAGCCGCGTTACTTGCCGCCGCTGCCC
AGCAGCAGCACCAGCAGCTGGAAGAGCAGCACGACGACGACGACGGCGAT
GGAGATGATGACGAGAACCAAGCAAGCTTTCTAGACCAT
BO04828.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsp1-RC | 1158 | CG12223-PC | 1..1155 | 17..1171 | 5715 | 99.7 | Plus |
Dsp1-RA | 1158 | CG12223-PA | 1..1155 | 17..1171 | 5715 | 99.7 | Plus |
Dsp1-RB | 1158 | CG12223-PB | 1..1155 | 17..1171 | 5715 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsp1-RC | 4511 | CG12223-RC | 718..1872 | 17..1171 | 5715 | 99.7 | Plus |
Dsp1-RA | 3990 | CG12223-RA | 197..1351 | 17..1171 | 5715 | 99.7 | Plus |
Dsp1-RB | 3915 | CG12223-RB | 122..1276 | 17..1171 | 5715 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16336288..16336743 | 38..493 | 2235 | 99.3 | Plus |
X | 23542271 | X | 16337625..16337804 | 992..1171 | 900 | 100 | Plus |
X | 23542271 | X | 16337381..16337556 | 817..992 | 880 | 100 | Plus |
X | 23542271 | X | 16337084..16337251 | 651..818 | 840 | 100 | Plus |
X | 23542271 | X | 16336850..16337009 | 493..652 | 785 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-27 20:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2854 | 21..477 | 336 | 56.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6831 | 1058..1134 | 123 | 65.4 | Plus |
BO04828.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:57 Download gff for
BO04828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RA | 1..1158 | 17..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:36 Download gff for
BO04828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RC | 713..1879 | 9..1180 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:50 Download gff for
BO04828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RB | 122..1276 | 17..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:57 Download gff for
BO04828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RA | 192..1358 | 9..1180 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:17 Download gff for
BO04828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RB | 122..1276 | 17..1173 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:17 Download gff for
BO04828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16337381..16337555 | 817..991 | 100 | -> | Plus |
X | 16337625..16337804 | 992..1173 | 98 | | Plus |
X | 16334390..16334413 | 17..40 | 100 | -> | Plus |
X | 16336291..16336743 | 41..493 | 99 | -> | Plus |
X | 16336851..16337009 | 494..652 | 99 | -> | Plus |
X | 16337086..16337249 | 653..816 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:50 Download gff for
BO04828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16228423..16228446 | 17..40 | 100 | -> | Plus |
arm_X | 16230324..16230776 | 41..493 | 99 | -> | Plus |
arm_X | 16230884..16231042 | 494..652 | 99 | -> | Plus |
arm_X | 16231119..16231282 | 653..816 | 100 | -> | Plus |
arm_X | 16231414..16231588 | 817..991 | 100 | -> | Plus |
arm_X | 16231658..16231837 | 992..1173 | 98 | | Plus |
BO04828.pep Sequence
Translation from 16 to 1189
> BO04828.pep
MEHFHQIQQLAAQQQQQVQQQQLQQHQVVVQQNQQQAHQNSSNTTAGVGT
QQLFTYKMASSFPNPATTMAQVVATSNAAGTTGYDYRLNMAQAAAAAAVP
GSQWWYSAANQGQVDANTAAQLQHQQQQQQQQQQQQQQQHQQQQQMQQQQ
QQQNVINSASPMSRVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIF
AEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGR
GKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRK
WSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIAMSAPSMQASMQAQ
AQKAALLAAAAQQQHQQLEEQHDDDDGDGDDDENQASFLDH
BO04828.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsp1-PC | 385 | CG12223-PC | 1..385 | 1..385 | 2005 | 100 | Plus |
Dsp1-PA | 385 | CG12223-PA | 1..385 | 1..385 | 2005 | 100 | Plus |
Dsp1-PB | 385 | CG12223-PB | 1..385 | 1..385 | 2005 | 100 | Plus |
Dsp1-PG | 386 | CG12223-PG | 1..386 | 1..385 | 1993 | 99.7 | Plus |
Dsp1-PD | 386 | CG12223-PD | 1..386 | 1..385 | 1993 | 99.7 | Plus |