Clone BO04830 Report

Search the DGRC for BO04830

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG10778-RA
Protein status:BO04830.pep: validated full length
Sequenced Size:934

Clone Sequence Records

BO04830.3prime Sequence

932 bp (822 high quality bases) assembled on 2005-12-02

> BO04830.3prime
ATGGTCTAGAAAGCTTGCGTTGGCGGCCAGTCGCACAAGCAGCTTCCGCC
GATCCTCATCGATGGTGGTCAGGAAATTCTGGACGCGTTCGCTGTAGAAG
TCAGTCGCCTTGGCCAGCTGGCAGCTCTGCATCCTCTCCGCTCGCCGAAA
GTCGTCCAGCTGCCAGCGATCACGCTGGTAGGCCAGAATGCTGGCCAGGA
AATGCCAGAAAGTGATCTGCGGCCACAGGACGTTGCTGAAGTACAACACG
GATGTGCTTAACTGCCACATCATGAAGTCGCTTAGCCTAGTCTCGCCGGA
GGTGCGGAACACCAGATCCGGTGGCGGCGAGTGTCGCGTGTAGAGGCATT
CTTCCAGCAACCGCTCACTGATGTCCTCGCCCGCCAAATCCTGGCTGCCA
TGCCGCAGTATCGTTTCCACCGCCTGCGTAATCTCATCCCGCGACGTGTA
CGCAAAGGCGACGTTCAGGAAGAGCTTGTCATTGCGCTCCGTGCTAAGCA
TAGCCGAAGCCACTAGTTTCTGCAAGTCGTGTGGCAGTAGCTCGATGTTA
CCAATCACCCGAATGCGGATGCCATGTTCGTCCAGTCGAGCAGTCTCCTC
CAGCAGGCGGGCAAACTTCTCTCTGGCCAAATTGAACAGACCCTCCACCT
CCTCGTTGGAACGCTTGAAGTTCTCGATGCTGAAGGCAAAGGTGGTCACC
TCGCGGACGCCAACGTCCAGGCACCAGCGCAGGCAGTCCGCAAGCTTCTC
GAATCCCCGCGAATGACCCTCGATCTTATCAATCTGCTGTGAGCGGGCGA
ACCTCCGATTACCGTCCATCACGAAGGCGACGTGGTGCGGAATGTAGCCA
CAGGCGCGCAGCGTTCGCATCGCTATCCGCTCCGTCCATGTGTACTTGTA
GTCGGAGACCCACGACATGTCGACTGATAACT

BO04830.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10778-PA 903 CG10778-RA 1..900 918..19 4500 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10778-RB 1251 CG10778-RB 44..944 919..19 4505 100 Minus
CG10778-RA 1346 CG10778-RA 139..1039 919..19 4505 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7932537..7933194 262..919 3290 100 Plus
X 23542271 X 7932052..7932297 19..264 1230 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:40:54 has no hits.

BO04830.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:56 Download gff for BO04830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10778-PA 1..903 15..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:42 Download gff for BO04830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10778-PA 1..903 15..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:38 Download gff for BO04830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 135..1048 8..925 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:29 Download gff for BO04830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 135..1048 8..925 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:29 Download gff for BO04830.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7932040..7932294 8..261 98 <- Plus
X 7932537..7933198 262..925 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:38 Download gff for BO04830.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7826073..7826327 8..261 98 <- Plus
arm_X 7826570..7827231 262..925 99   Plus

BO04830.5prime Sequence

906 bp (854 high quality bases) assembled on 2005-11-29

> BO04830.5prime
GAAGTTATCAGTCGACATGTCGTGGGTCTCCGACTACAAGTACACATGGA
CGGAGCGGATAGCGATGCGAACGCTGCGCGCCTGTGGCTACATTCCGCAC
CACGTCGCCTTCGTGATGGACGGTAATCGGAGGTTCGCCCGCTCACAGCA
GATTGATAAGATCGAGGGTCATTCGCGGGGATTCGAGAAGCTTGCGGACT
GCCTGCGCTGGTGCCTGGACGTTGGCGTCCGCGAGGTGACCACCTTTGCC
TTCAGCATCGAGAACTTCAAGCGTTCCAACGAGGAGGTGGAGGGTCTGTT
CAATTTGGCCAGAGAGAAGTTTGCCCGCCTGCTGGAGGAGACTGCTCGAC
TGGACGAACATGGCATCCGCATTCGGGTGATTGGTAACATCGAGCTACTG
CCACACGACTTGCAGAAACTAGTGGCTTCGGCTATGCTTAGCACGGAGCG
CAATGACAAGCTCTTCCTGAACGTCGCCTTTGCGTACACGTCGCGGGATG
AGATTACGCAGGCGGTGGAAACGATACTGCGGCATGGCAGCCAGGATTTG
GCGGGCGAGGACATCAGTGAGCGGTTGCTGGAAGAATGCCTCTACACGCG
ACACTCGCCGCCACCGGATCTGGTGTTCCGCACCTCCGGCGAGACTAGGC
TAAGCGACTTCATGATGTGGCAGTTAAGCACATCCGTGTTGTACTTCAGC
AACGTCCTGTGGCCGCAGATCACTTTCTGGCATTTCCTGGCCAGCATTCT
GGCCTACCAGCGTGATCGCTGGCAGCTGGACGACTTTCGGCGAGCGGAGA
GGATGCAGAGCTGCCAGCTGGCCAAGGCGACTGACTTCTACAGCGAACGC
GTCCAGAATTTCCTGACCACATCGATGAGGATCGGCGGGAGCTGCTTGTG
CGACTG

BO04830.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10778-PA 903 CG10778-RA 1..854 17..870 4270 100 Plus
CG10778-PA 903 CG10778-RA 855..891 870..906 160 97.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10778-RB 1251 CG10778-RB 44..935 16..906 4420 99.8 Plus
CG10778-RA 1346 CG10778-RA 139..1030 16..906 4420 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7932537..7933194 673..16 3290 100 Minus
X 23542271 X 7932061..7932297 906..671 1120 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 10:10:44 has no hits.

BO04830.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:57 Download gff for BO04830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10778-PA 1..891 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:44 Download gff for BO04830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10778-PA 1..891 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:59 Download gff for BO04830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 135..1030 10..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:49:27 Download gff for BO04830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 135..1030 10..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:27 Download gff for BO04830.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7932061..7932294 674..906 99 <- Minus
X 7932537..7933198 10..673 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:59 Download gff for BO04830.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7826094..7826327 674..906 99 <- Minus
arm_X 7826570..7827231 10..673 99   Minus

BO04830.complete Sequence

934 bp (934 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629882

> BO04830.complete
GAAGTTATCAGTCGACATGTCGTGGGTCTCCGACTACAAGTACACATGGA
CGGAGCGGATAGCGATGCGAACGCTGCGCGCCTGTGGCTACATTCCGCAC
CACGTCGCCTTCGTGATGGACGGTAATCGGAGGTTCGCCCGCTCACAGCA
GATTGATAAGATCGAGGGTCATTCGCGGGGATTCGAGAAGCTTGCGGACT
GCCTGCGCTGGTGCCTGGACGTTGGCGTCCGCGAGGTGACCACCTTTGCC
TTCAGCATCGAGAACTTCAAGCGTTCCAACGAGGAGGTGGAGGGTCTGTT
CAATTTGGCCAGAGAGAAGTTTGCCCGCCTGCTGGAGGAGACTGCTCGAC
TGGACGAACATGGCATCCGCATTCGGGTGATTGGTAACATCGAGCTACTG
CCACACGACTTGCAGAAACTAGTGGCTTCGGCTATGCTTAGCACGGAGCG
CAATGACAAGCTCTTCCTGAACGTCGCCTTTGCGTACACGTCGCGGGATG
AGATTACGCAGGCGGTGGAAACGATACTGCGGCATGGCAGCCAGGATTTG
GCGGGCGAGGACATCAGTGAGCGGTTGCTGGAAGAATGCCTCTACACGCG
ACACTCGCCGCCACCGGATCTGGTGTTCCGCACCTCCGGCGAGACTAGGC
TAAGCGACTTCATGATGTGGCAGTTAAGCACATCCGTGTTGTACTTCAGC
AACGTCCTGTGGCCGCAGATCACTTTCTGGCATTTCCTGGCCAGCATTCT
GGCCTACCAGCGTGATCGCTGGCAGCTGGACGACTTTCGGCGAGCGGAGA
GGATGCAGAGCTGCCAGCTGGCCAAGGCGACTGACTTCTACAGCGAACGC
GTCCAGAATTTCCTGACCACCATCGATGAGGATCGGCGGAAGCTGCTTGT
GCGACTGGCCGCCAACGCAAGCTTTCTAGACCAT

BO04830.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10778-RB 903 CG10778-PB 1..900 17..916 4500 100 Plus
CG10778-RA 903 CG10778-PA 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10778-RB 1251 CG10778-RB 44..944 16..916 4505 100 Plus
CG10778-RA 1346 CG10778-RA 139..1039 16..916 4505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7932537..7933194 673..16 3290 100 Minus
X 23542271 X 7932052..7932297 916..671 1230 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:00:17 has no hits.

BO04830.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:00 Download gff for BO04830.complete
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 1..903 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:39 Download gff for BO04830.complete
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 83..996 10..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:26 Download gff for BO04830.complete
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 140..1039 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:00 Download gff for BO04830.complete
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 83..996 10..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:35 Download gff for BO04830.complete
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 140..1039 17..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:35 Download gff for BO04830.complete
Subject Subject Range Query Range Percent Splice Strand
X 7932050..7932294 674..918 99 <- Minus
X 7932537..7933193 17..673 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:26 Download gff for BO04830.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7826083..7826327 674..918 99 <- Minus
arm_X 7826570..7827226 17..673 100   Minus

BO04830.pep Sequence

Translation from 16 to 934

> BO04830.pep
MSWVSDYKYTWTERIAMRTLRACGYIPHHVAFVMDGNRRFARSQQIDKIE
GHSRGFEKLADCLRWCLDVGVREVTTFAFSIENFKRSNEEVEGLFNLARE
KFARLLEETARLDEHGIRIRVIGNIELLPHDLQKLVASAMLSTERNDKLF
LNVAFAYTSRDEITQAVETILRHGSQDLAGEDISERLLEECLYTRHSPPP
DLVFRTSGETRLSDFMMWQLSTSVLYFSNVLWPQITFWHFLASILAYQRD
RWQLDDFRRAERMQSCQLAKATDFYSERVQNFLTTIDEDRRKLLVRLAAN
ASFLDH

BO04830.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10778-PB 300 CG10778-PB 1..300 1..300 1565 100 Plus
CG10778-PA 300 CG10778-PA 1..300 1..300 1565 100 Plus