Clone Sequence Records
BO04830.3prime Sequence
932 bp (822 high quality bases) assembled on 2005-12-02
> BO04830.3prime
ATGGTCTAGAAAGCTTGCGTTGGCGGCCAGTCGCACAAGCAGCTTCCGCC
GATCCTCATCGATGGTGGTCAGGAAATTCTGGACGCGTTCGCTGTAGAAG
TCAGTCGCCTTGGCCAGCTGGCAGCTCTGCATCCTCTCCGCTCGCCGAAA
GTCGTCCAGCTGCCAGCGATCACGCTGGTAGGCCAGAATGCTGGCCAGGA
AATGCCAGAAAGTGATCTGCGGCCACAGGACGTTGCTGAAGTACAACACG
GATGTGCTTAACTGCCACATCATGAAGTCGCTTAGCCTAGTCTCGCCGGA
GGTGCGGAACACCAGATCCGGTGGCGGCGAGTGTCGCGTGTAGAGGCATT
CTTCCAGCAACCGCTCACTGATGTCCTCGCCCGCCAAATCCTGGCTGCCA
TGCCGCAGTATCGTTTCCACCGCCTGCGTAATCTCATCCCGCGACGTGTA
CGCAAAGGCGACGTTCAGGAAGAGCTTGTCATTGCGCTCCGTGCTAAGCA
TAGCCGAAGCCACTAGTTTCTGCAAGTCGTGTGGCAGTAGCTCGATGTTA
CCAATCACCCGAATGCGGATGCCATGTTCGTCCAGTCGAGCAGTCTCCTC
CAGCAGGCGGGCAAACTTCTCTCTGGCCAAATTGAACAGACCCTCCACCT
CCTCGTTGGAACGCTTGAAGTTCTCGATGCTGAAGGCAAAGGTGGTCACC
TCGCGGACGCCAACGTCCAGGCACCAGCGCAGGCAGTCCGCAAGCTTCTC
GAATCCCCGCGAATGACCCTCGATCTTATCAATCTGCTGTGAGCGGGCGA
ACCTCCGATTACCGTCCATCACGAAGGCGACGTGGTGCGGAATGTAGCCA
CAGGCGCGCAGCGTTCGCATCGCTATCCGCTCCGTCCATGTGTACTTGTA
GTCGGAGACCCACGACATGTCGACTGATAACT
BO04830.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10778-PA | 903 | CG10778-RA | 1..900 | 918..19 | 4500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10778-RB | 1251 | CG10778-RB | 44..944 | 919..19 | 4505 | 100 | Minus |
CG10778-RA | 1346 | CG10778-RA | 139..1039 | 919..19 | 4505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7932537..7933194 | 262..919 | 3290 | 100 | Plus |
X | 23542271 | X | 7932052..7932297 | 19..264 | 1230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:40:54 has no hits.
BO04830.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:56 Download gff for
BO04830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10778-PA | 1..903 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:42 Download gff for
BO04830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10778-PA | 1..903 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:38 Download gff for
BO04830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10778-RA | 135..1048 | 8..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:29 Download gff for
BO04830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10778-RA | 135..1048 | 8..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:29 Download gff for
BO04830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7932040..7932294 | 8..261 | 98 | <- | Plus |
X | 7932537..7933198 | 262..925 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:38 Download gff for
BO04830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7826073..7826327 | 8..261 | 98 | <- | Plus |
arm_X | 7826570..7827231 | 262..925 | 99 | | Plus |
BO04830.5prime Sequence
906 bp (854 high quality bases) assembled on 2005-11-29
> BO04830.5prime
GAAGTTATCAGTCGACATGTCGTGGGTCTCCGACTACAAGTACACATGGA
CGGAGCGGATAGCGATGCGAACGCTGCGCGCCTGTGGCTACATTCCGCAC
CACGTCGCCTTCGTGATGGACGGTAATCGGAGGTTCGCCCGCTCACAGCA
GATTGATAAGATCGAGGGTCATTCGCGGGGATTCGAGAAGCTTGCGGACT
GCCTGCGCTGGTGCCTGGACGTTGGCGTCCGCGAGGTGACCACCTTTGCC
TTCAGCATCGAGAACTTCAAGCGTTCCAACGAGGAGGTGGAGGGTCTGTT
CAATTTGGCCAGAGAGAAGTTTGCCCGCCTGCTGGAGGAGACTGCTCGAC
TGGACGAACATGGCATCCGCATTCGGGTGATTGGTAACATCGAGCTACTG
CCACACGACTTGCAGAAACTAGTGGCTTCGGCTATGCTTAGCACGGAGCG
CAATGACAAGCTCTTCCTGAACGTCGCCTTTGCGTACACGTCGCGGGATG
AGATTACGCAGGCGGTGGAAACGATACTGCGGCATGGCAGCCAGGATTTG
GCGGGCGAGGACATCAGTGAGCGGTTGCTGGAAGAATGCCTCTACACGCG
ACACTCGCCGCCACCGGATCTGGTGTTCCGCACCTCCGGCGAGACTAGGC
TAAGCGACTTCATGATGTGGCAGTTAAGCACATCCGTGTTGTACTTCAGC
AACGTCCTGTGGCCGCAGATCACTTTCTGGCATTTCCTGGCCAGCATTCT
GGCCTACCAGCGTGATCGCTGGCAGCTGGACGACTTTCGGCGAGCGGAGA
GGATGCAGAGCTGCCAGCTGGCCAAGGCGACTGACTTCTACAGCGAACGC
GTCCAGAATTTCCTGACCACATCGATGAGGATCGGCGGGAGCTGCTTGTG
CGACTG
BO04830.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10778-PA | 903 | CG10778-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
CG10778-PA | 903 | CG10778-RA | 855..891 | 870..906 | 160 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10778-RB | 1251 | CG10778-RB | 44..935 | 16..906 | 4420 | 99.8 | Plus |
CG10778-RA | 1346 | CG10778-RA | 139..1030 | 16..906 | 4420 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7932537..7933194 | 673..16 | 3290 | 100 | Minus |
X | 23542271 | X | 7932061..7932297 | 906..671 | 1120 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:10:44 has no hits.
BO04830.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:10:57 Download gff for
BO04830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10778-PA | 1..891 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:44 Download gff for
BO04830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10778-PA | 1..891 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:59 Download gff for
BO04830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10778-RA | 135..1030 | 10..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:49:27 Download gff for
BO04830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10778-RA | 135..1030 | 10..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:27 Download gff for
BO04830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7932061..7932294 | 674..906 | 99 | <- | Minus |
X | 7932537..7933198 | 10..673 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:59 Download gff for
BO04830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7826094..7826327 | 674..906 | 99 | <- | Minus |
arm_X | 7826570..7827231 | 10..673 | 99 | | Minus |
BO04830.complete Sequence
934 bp (934 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629882
> BO04830.complete
GAAGTTATCAGTCGACATGTCGTGGGTCTCCGACTACAAGTACACATGGA
CGGAGCGGATAGCGATGCGAACGCTGCGCGCCTGTGGCTACATTCCGCAC
CACGTCGCCTTCGTGATGGACGGTAATCGGAGGTTCGCCCGCTCACAGCA
GATTGATAAGATCGAGGGTCATTCGCGGGGATTCGAGAAGCTTGCGGACT
GCCTGCGCTGGTGCCTGGACGTTGGCGTCCGCGAGGTGACCACCTTTGCC
TTCAGCATCGAGAACTTCAAGCGTTCCAACGAGGAGGTGGAGGGTCTGTT
CAATTTGGCCAGAGAGAAGTTTGCCCGCCTGCTGGAGGAGACTGCTCGAC
TGGACGAACATGGCATCCGCATTCGGGTGATTGGTAACATCGAGCTACTG
CCACACGACTTGCAGAAACTAGTGGCTTCGGCTATGCTTAGCACGGAGCG
CAATGACAAGCTCTTCCTGAACGTCGCCTTTGCGTACACGTCGCGGGATG
AGATTACGCAGGCGGTGGAAACGATACTGCGGCATGGCAGCCAGGATTTG
GCGGGCGAGGACATCAGTGAGCGGTTGCTGGAAGAATGCCTCTACACGCG
ACACTCGCCGCCACCGGATCTGGTGTTCCGCACCTCCGGCGAGACTAGGC
TAAGCGACTTCATGATGTGGCAGTTAAGCACATCCGTGTTGTACTTCAGC
AACGTCCTGTGGCCGCAGATCACTTTCTGGCATTTCCTGGCCAGCATTCT
GGCCTACCAGCGTGATCGCTGGCAGCTGGACGACTTTCGGCGAGCGGAGA
GGATGCAGAGCTGCCAGCTGGCCAAGGCGACTGACTTCTACAGCGAACGC
GTCCAGAATTTCCTGACCACCATCGATGAGGATCGGCGGAAGCTGCTTGT
GCGACTGGCCGCCAACGCAAGCTTTCTAGACCAT
BO04830.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10778-RB | 903 | CG10778-PB | 1..900 | 17..916 | 4500 | 100 | Plus |
CG10778-RA | 903 | CG10778-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10778-RB | 1251 | CG10778-RB | 44..944 | 16..916 | 4505 | 100 | Plus |
CG10778-RA | 1346 | CG10778-RA | 139..1039 | 16..916 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7932537..7933194 | 673..16 | 3290 | 100 | Minus |
X | 23542271 | X | 7932052..7932297 | 916..671 | 1230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:00:17 has no hits.
BO04830.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:00 Download gff for
BO04830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10778-RA | 1..903 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:39 Download gff for
BO04830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10778-RA | 83..996 | 10..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:26 Download gff for
BO04830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10778-RA | 140..1039 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:00 Download gff for
BO04830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10778-RA | 83..996 | 10..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:35 Download gff for
BO04830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10778-RA | 140..1039 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:35 Download gff for
BO04830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7932050..7932294 | 674..918 | 99 | <- | Minus |
X | 7932537..7933193 | 17..673 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:26 Download gff for
BO04830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7826083..7826327 | 674..918 | 99 | <- | Minus |
arm_X | 7826570..7827226 | 17..673 | 100 | | Minus |
BO04830.pep Sequence
Translation from 16 to 934
> BO04830.pep
MSWVSDYKYTWTERIAMRTLRACGYIPHHVAFVMDGNRRFARSQQIDKIE
GHSRGFEKLADCLRWCLDVGVREVTTFAFSIENFKRSNEEVEGLFNLARE
KFARLLEETARLDEHGIRIRVIGNIELLPHDLQKLVASAMLSTERNDKLF
LNVAFAYTSRDEITQAVETILRHGSQDLAGEDISERLLEECLYTRHSPPP
DLVFRTSGETRLSDFMMWQLSTSVLYFSNVLWPQITFWHFLASILAYQRD
RWQLDDFRRAERMQSCQLAKATDFYSERVQNFLTTIDEDRRKLLVRLAAN
ASFLDH
BO04830.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10778-PB | 300 | CG10778-PB | 1..300 | 1..300 | 1565 | 100 | Plus |
CG10778-PA | 300 | CG10778-PA | 1..300 | 1..300 | 1565 | 100 | Plus |