Clone BO04832 Report

Search the DGRC for BO04832

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG5114-RA
Protein status:BO04832.pep: validated full length
Sequenced Size:1309

Clone Sequence Records

BO04832.3prime Sequence

927 bp (829 high quality bases) assembled on 2005-12-02

> BO04832.3prime
ATGGTCTAGAAAGCTTGCATCGCCCAGCGCCGGCACCTTGAATATCTTGG
CCGTGTTGTCCTCGGATACCGTTAGCAATAGATTTTCCTGAGGCTTGTAG
ACAAACTCGTAGATGTGATAGTAGTGTCCCGTCAGAGTGAATTTCAGAAT
TCCTGTGCGTGCGTCGAATGCGTTCAGATTTCCCTGCGAGGTGGCCGCAA
GTATCGTGTGGTCGTTCAACCATTTGATCCTTATGACAGCATCATTGGGA
ACTGGATTTTCGCATATGGTACGCAACGCTGATTTGGCATAGTCCCAGAT
GGATATCCTGCCGTCCAGCGAGCCACAGGCAAAGAGCTTTAGATCCGCCG
AGGAGGGAGCAAAGGCCAGACACTCAATACCGTGTTCCGACTGGATTGTG
CTAACCGGACCGTTGTTAGTGCAGAACAGCATTTTTCCGGACGCCTCAGC
GCAGACGTAGAAGGGCGATTCCCTTTCGCAGGCCACCACCGCGTGCGTGA
TCTCGCCGAAACCCATTGGATGCGATTCGTTTACGTCAATGAGCACCTGA
CAGCTCTTGAGATCCCACAGCTTTACGGATCCGTTCACGTAGGCCGTGAA
CAGCTTTTTGCCATCCCCACTGAGCTCTCCGGACTCGCAACGCGAAGATT
GTCCCGGCAGGATTTTGCATTCACCGCTGGGTATGCGGAAAACGAAGACC
TCTCCGCTGTCACTACCCGCCAGCAGGATGTGGGCAGCTCGATGCCAGAA
GAGCCAGGACATGTCGCTCATGGAGTACTCCCAGATTTTAGTCAGGATCG
GACGTTCGTCGTGCTTTTCACTGACCTTGAAGACAAACAGATCGCCGGCT
AGATCACCGGTGGCCAAATAGACGCCGTCGTGACTGAAATGCGTTTCCGT
GACGGTGTCCTTGTGCTCCGTGATCTC

BO04832.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5114-PA 1278 CG5114-RA 367..1275 927..19 4495 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5114-RA 1440 CG5114-RA 467..1375 927..19 4515 99.8 Minus
CG5114-RB 1500 CG5114-RB 467..957 927..437 2455 100 Minus
CG5114-RB 1500 CG5114-RB 1017..1435 437..19 2065 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14983301..14983791 927..437 2455 100 Minus
3L 28110227 3L 14984209..14984421 231..19 1050 99.5 Minus
3L 28110227 3L 14983912..14984121 438..229 1035 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 02:12:49 has no hits.

BO04832.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:00 Download gff for BO04832.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5114-PA 367..1278 18..927 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:48 Download gff for BO04832.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5114-PA 367..1278 18..927 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:16 Download gff for BO04832.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5114-RA 467..1380 11..927 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:39:26 Download gff for BO04832.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5114-RA 467..1380 11..927 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:39:26 Download gff for BO04832.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14983301..14983790 438..927 100 -> Minus
3L 14983913..14984120 230..437 99 -> Minus
3L 14984211..14984426 11..229 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:16 Download gff for BO04832.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14977013..14977220 230..437 99 -> Minus
arm_3L 14976401..14976890 438..927 100 -> Minus
arm_3L 14977311..14977526 11..229 97   Minus

BO04832.5prime Sequence

889 bp (760 high quality bases) assembled on 2005-11-29

> BO04832.5prime
GAAGTTATCAGTCGACATGCGTGACAACACACCGCCACACCGGCCAGATT
TCGATGACGGCGACGACGAACTCCAGGAGATAATTGAGCTGGAGGAGCAG
CCGCTGGACGAAGATGACGACGATTTGGAGGAGGTGACGCTGGAGCAACT
GGAGGCCCGGCTTGCAATGGCCGGTGGCGATGATGATGAAGAGGAGGACG
AGGAGGAGCTACGTGACCGTGAGAGAATAGCAGCCATCACGGACGAAGCT
ACGGTCACTTTCAAGAAGCACACCGCTCCTGTTTTCGCCTGCAGTCTGCA
TCCCAACTACAATTGGGCGGTGACGGGCAGCGAGGACGATCGAGCCTTCG
TTTGGGAAACCTCCACCGGCGATGTCCTCTACGAGATCACGGAGCACAAG
GACACCGTCACGGAAACGCATTTCAGTCACGACGGCGTCTATTTGGCCAC
CGGTGATCTAGCCGGCGATCTGTTTGTCTTCAAGGTCAGTGAAAAGCACG
ACGAACGTCCGATCCTGACTAAAATCTGGGAGTACTCCATGAGCGACATG
TCCTGGCTCTTCTGGCATCGAGCTGCCCACATCCTGCTGGCGGGTAGTGA
CAGCGGAGAGGTCTTCGTTTTCCGCATACCCAGCGGTGAATGCAAAATCC
TGCCGGGACAATCTTCGCGTTGCGAGTCCGGAGAGCTCAGTGGGGATGGC
AAAAAGCTGTTCACGGCCTACGTGAACGGATCCGTAAAGCTGTGGGATCT
CAAGAGCTGTCAGGTGCTCATTGACGTAAACGAATCGCATCCAATGGGTT
TCGGCGAGATCACGCACGCGGTGGTGGCCTGCGAAAGGGAATCGCCCTTC
TACGTCTGCGCTGAGGCGTCCGGAAAAATGCTGTTCTGC

BO04832.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5114-PA 1278 CG5114-RA 1..873 17..889 4340 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5114-RA 1440 CG5114-RA 101..973 17..889 4350 99.9 Plus
CG5114-RB 1500 CG5114-RB 101..957 17..873 4270 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14982935..14983791 17..873 4270 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 17:54:32 has no hits.

BO04832.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:01 Download gff for BO04832.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5114-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:49 Download gff for BO04832.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5114-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:43:15 Download gff for BO04832.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5114-RA 95..973 7..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:46 Download gff for BO04832.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5114-RA 95..973 7..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:46 Download gff for BO04832.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14982929..14983790 7..872 99 -> Plus
3L 14983913..14983929 873..889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:43:15 Download gff for BO04832.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14976029..14976890 7..872 99 -> Plus
arm_3L 14977013..14977029 873..889 100   Plus

BO04832.complete Sequence

1309 bp (1309 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629884

> BO04832.complete
GAAGTTATCAGTCGACATGCGTGACAACACACCGCCACACCGGCCAGATT
TCGATGACGGCGACGACGAACTCCAGGAGATAATTGAGCTGGAGGAGCAG
CCGCTGGACGAAGATGACGACGATTTGGAGGAGGTGACGCTGGAGCAACT
GGAGGCCCGGCTTGCAATGGCCGGTGGCGATGATGATGAAGAGGAGGACG
AGGAGGAGCTACGTGACCGTGAGAGAATAGCAGCCATCACGGACGAAGCT
ACGGTCACTTTCAAGAAGCACACCGCTCCTGTTTTCGCCTGCAGTCTGCA
TCCCAACTACAATTGGGCGGTGACGGGCAGCGAGGACGATCGAGCCTTCG
TTTGGGAAACCTCCACCGGCGATGTCCTCTACGAGATCACGGAGCACAAG
GACACCGTCACGGAAACGCATTTCAGTCACGACGGCGTCTATTTGGCCAC
CGGTGATCTAGCCGGCGATCTGTTTGTCTTCAAGGTCAGTGAAAAGCACG
ACGAACGTCCGATCCTGACTAAAATCTGGGAGTACTCCATGAGCGACATG
TCCTGGCTCTTCTGGCATCGAGCTGCCCACATCCTGCTGGCGGGTAGTGA
CAGCGGAGAGGTCTTCGTTTTCCGCATACCCAGCGGTGAATGCAAAATCC
TGCCGGGACAATCTTCGCGTTGCGAGTCCGGAGAGCTCAGTGGGGATGGC
AAAAAGCTGTTCACGGCCTACGTGAACGGATCCGTAAAGCTGTGGGATCT
CAAGAGCTGTCAGGTGCTCATTGACGTAAACGAATCGCATCCAATGGGTT
TCGGCGAGATCACGCACGCGGTGGTGGCCTGCGAAAGGGAATCGCCCTTC
TACGTCTGCGCTGAGGCGTCCGGAAAAATGCTGTTCTGCACTAACAACGG
TCCGGTTAGCACAATCCAGTCGGAACACGGTATTGAGTGTCTGGCCTTTG
CTCCCTCCTCGGCGGATCTAAAGCTCTTTGCCTGTGGCTCGCTGGACGGC
AGGATATCCATCTGGGACTATGCCAAATCAGCGTTGCGTACCATATGCGA
AAATCCAGTTCCCAATGATGCTGTCATAAGGATCAAATGGTTGAACGACC
ACACGATACTTGCGGCCACCTCGCAGGGAAATCTGAACGCATTCGACGCA
CGCACAGGAATTCTGAAATTCACTCTGACGGGACACTACTATCACATCTA
CGAGTTTGTCTACAAGCCTCAGGAAAATCTATTGCTAACGGTATCCGAGG
ACAACACGGCCAAGATATTCAAGGTGCCGGCGCTGGGCGATGCAAGCTTT
CTAGACCAT

BO04832.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5114-RA 1278 CG5114-PA 1..1275 17..1291 6330 99.8 Plus
CG5114-RB 1338 CG5114-PB 1..857 17..873 4270 99.9 Plus
CG5114-RB 1338 CG5114-PB 917..1335 873..1291 2065 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5114-RA 1440 CG5114-RA 101..1375 17..1291 6330 99.8 Plus
CG5114-RB 1500 CG5114-RB 101..957 17..873 4270 99.9 Plus
CG5114-RB 1500 CG5114-RB 1017..1435 873..1291 2065 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14982935..14983791 17..873 4270 99.9 Plus
3L 28110227 3L 14984209..14984421 1079..1291 1050 99.5 Plus
3L 28110227 3L 14983912..14984121 872..1081 1035 99.5 Plus
Blast to na_te.dros performed on 2014-11-27 07:59:54 has no hits.

BO04832.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:47 Download gff for BO04832.complete
Subject Subject Range Query Range Percent Splice Strand
CG5114-RA 1..1278 17..1292 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:22 Download gff for BO04832.complete
Subject Subject Range Query Range Percent Splice Strand
CG5114-RA 82..1367 7..1299 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:13 Download gff for BO04832.complete
Subject Subject Range Query Range Percent Splice Strand
CG5114-RA 101..1375 17..1293 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:47 Download gff for BO04832.complete
Subject Subject Range Query Range Percent Splice Strand
CG5114-RA 82..1367 7..1299 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:59 Download gff for BO04832.complete
Subject Subject Range Query Range Percent Splice Strand
CG5114-RA 101..1375 17..1293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:59 Download gff for BO04832.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14982935..14983790 17..872 99 -> Plus
3L 14983913..14984120 873..1080 99 -> Plus
3L 14984211..14984421 1081..1293 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:13 Download gff for BO04832.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14976035..14976890 17..872 99 -> Plus
arm_3L 14977013..14977220 873..1080 99 -> Plus
arm_3L 14977311..14977521 1081..1293 98   Plus

BO04832.pep Sequence

Translation from 16 to 1309

> BO04832.pep
MRDNTPPHRPDFDDGDDELQEIIELEEQPLDEDDDDLEEVTLEQLEARLA
MAGGDDDEEEDEEELRDRERIAAITDEATVTFKKHTAPVFACSLHPNYNW
AVTGSEDDRAFVWETSTGDVLYEITEHKDTVTETHFSHDGVYLATGDLAG
DLFVFKVSEKHDERPILTKIWEYSMSDMSWLFWHRAAHILLAGSDSGEVF
VFRIPSGECKILPGQSSRCESGELSGDGKKLFTAYVNGSVKLWDLKSCQV
LIDVNESHPMGFGEITHAVVACERESPFYVCAEASGKMLFCTNNGPVSTI
QSEHGIECLAFAPSSADLKLFACGSLDGRISIWDYAKSALRTICENPVPN
DAVIRIKWLNDHTILAATSQGNLNAFDARTGILKFTLTGHYYHIYEFVYK
PQENLLLTVSEDNTAKIFKVPALGDASFLDH

BO04832.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5114-PA 425 CG5114-PA 1..425 1..425 2265 100 Plus
CG5114-PB 445 CG5114-PB 1..445 1..425 2234 95.5 Plus