Clone Sequence Records
BO04832.3prime Sequence
927 bp (829 high quality bases) assembled on 2005-12-02
> BO04832.3prime
ATGGTCTAGAAAGCTTGCATCGCCCAGCGCCGGCACCTTGAATATCTTGG
CCGTGTTGTCCTCGGATACCGTTAGCAATAGATTTTCCTGAGGCTTGTAG
ACAAACTCGTAGATGTGATAGTAGTGTCCCGTCAGAGTGAATTTCAGAAT
TCCTGTGCGTGCGTCGAATGCGTTCAGATTTCCCTGCGAGGTGGCCGCAA
GTATCGTGTGGTCGTTCAACCATTTGATCCTTATGACAGCATCATTGGGA
ACTGGATTTTCGCATATGGTACGCAACGCTGATTTGGCATAGTCCCAGAT
GGATATCCTGCCGTCCAGCGAGCCACAGGCAAAGAGCTTTAGATCCGCCG
AGGAGGGAGCAAAGGCCAGACACTCAATACCGTGTTCCGACTGGATTGTG
CTAACCGGACCGTTGTTAGTGCAGAACAGCATTTTTCCGGACGCCTCAGC
GCAGACGTAGAAGGGCGATTCCCTTTCGCAGGCCACCACCGCGTGCGTGA
TCTCGCCGAAACCCATTGGATGCGATTCGTTTACGTCAATGAGCACCTGA
CAGCTCTTGAGATCCCACAGCTTTACGGATCCGTTCACGTAGGCCGTGAA
CAGCTTTTTGCCATCCCCACTGAGCTCTCCGGACTCGCAACGCGAAGATT
GTCCCGGCAGGATTTTGCATTCACCGCTGGGTATGCGGAAAACGAAGACC
TCTCCGCTGTCACTACCCGCCAGCAGGATGTGGGCAGCTCGATGCCAGAA
GAGCCAGGACATGTCGCTCATGGAGTACTCCCAGATTTTAGTCAGGATCG
GACGTTCGTCGTGCTTTTCACTGACCTTGAAGACAAACAGATCGCCGGCT
AGATCACCGGTGGCCAAATAGACGCCGTCGTGACTGAAATGCGTTTCCGT
GACGGTGTCCTTGTGCTCCGTGATCTC
BO04832.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-PA | 1278 | CG5114-RA | 367..1275 | 927..19 | 4495 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-RA | 1440 | CG5114-RA | 467..1375 | 927..19 | 4515 | 99.8 | Minus |
CG5114-RB | 1500 | CG5114-RB | 467..957 | 927..437 | 2455 | 100 | Minus |
CG5114-RB | 1500 | CG5114-RB | 1017..1435 | 437..19 | 2065 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:12:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14983301..14983791 | 927..437 | 2455 | 100 | Minus |
3L | 28110227 | 3L | 14984209..14984421 | 231..19 | 1050 | 99.5 | Minus |
3L | 28110227 | 3L | 14983912..14984121 | 438..229 | 1035 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:12:49 has no hits.
BO04832.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:00 Download gff for
BO04832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-PA | 367..1278 | 18..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:48 Download gff for
BO04832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-PA | 367..1278 | 18..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:16 Download gff for
BO04832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 467..1380 | 11..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:39:26 Download gff for
BO04832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 467..1380 | 11..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:39:26 Download gff for
BO04832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14983301..14983790 | 438..927 | 100 | -> | Minus |
3L | 14983913..14984120 | 230..437 | 99 | -> | Minus |
3L | 14984211..14984426 | 11..229 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:16 Download gff for
BO04832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14977013..14977220 | 230..437 | 99 | -> | Minus |
arm_3L | 14976401..14976890 | 438..927 | 100 | -> | Minus |
arm_3L | 14977311..14977526 | 11..229 | 97 | | Minus |
BO04832.5prime Sequence
889 bp (760 high quality bases) assembled on 2005-11-29
> BO04832.5prime
GAAGTTATCAGTCGACATGCGTGACAACACACCGCCACACCGGCCAGATT
TCGATGACGGCGACGACGAACTCCAGGAGATAATTGAGCTGGAGGAGCAG
CCGCTGGACGAAGATGACGACGATTTGGAGGAGGTGACGCTGGAGCAACT
GGAGGCCCGGCTTGCAATGGCCGGTGGCGATGATGATGAAGAGGAGGACG
AGGAGGAGCTACGTGACCGTGAGAGAATAGCAGCCATCACGGACGAAGCT
ACGGTCACTTTCAAGAAGCACACCGCTCCTGTTTTCGCCTGCAGTCTGCA
TCCCAACTACAATTGGGCGGTGACGGGCAGCGAGGACGATCGAGCCTTCG
TTTGGGAAACCTCCACCGGCGATGTCCTCTACGAGATCACGGAGCACAAG
GACACCGTCACGGAAACGCATTTCAGTCACGACGGCGTCTATTTGGCCAC
CGGTGATCTAGCCGGCGATCTGTTTGTCTTCAAGGTCAGTGAAAAGCACG
ACGAACGTCCGATCCTGACTAAAATCTGGGAGTACTCCATGAGCGACATG
TCCTGGCTCTTCTGGCATCGAGCTGCCCACATCCTGCTGGCGGGTAGTGA
CAGCGGAGAGGTCTTCGTTTTCCGCATACCCAGCGGTGAATGCAAAATCC
TGCCGGGACAATCTTCGCGTTGCGAGTCCGGAGAGCTCAGTGGGGATGGC
AAAAAGCTGTTCACGGCCTACGTGAACGGATCCGTAAAGCTGTGGGATCT
CAAGAGCTGTCAGGTGCTCATTGACGTAAACGAATCGCATCCAATGGGTT
TCGGCGAGATCACGCACGCGGTGGTGGCCTGCGAAAGGGAATCGCCCTTC
TACGTCTGCGCTGAGGCGTCCGGAAAAATGCTGTTCTGC
BO04832.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-PA | 1278 | CG5114-RA | 1..873 | 17..889 | 4340 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-RA | 1440 | CG5114-RA | 101..973 | 17..889 | 4350 | 99.9 | Plus |
CG5114-RB | 1500 | CG5114-RB | 101..957 | 17..873 | 4270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14982935..14983791 | 17..873 | 4270 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:54:32 has no hits.
BO04832.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:01 Download gff for
BO04832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:49 Download gff for
BO04832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:43:15 Download gff for
BO04832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 95..973 | 7..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:46 Download gff for
BO04832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 95..973 | 7..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:46 Download gff for
BO04832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14982929..14983790 | 7..872 | 99 | -> | Plus |
3L | 14983913..14983929 | 873..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:43:15 Download gff for
BO04832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14976029..14976890 | 7..872 | 99 | -> | Plus |
arm_3L | 14977013..14977029 | 873..889 | 100 | | Plus |
BO04832.complete Sequence
1309 bp (1309 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629884
> BO04832.complete
GAAGTTATCAGTCGACATGCGTGACAACACACCGCCACACCGGCCAGATT
TCGATGACGGCGACGACGAACTCCAGGAGATAATTGAGCTGGAGGAGCAG
CCGCTGGACGAAGATGACGACGATTTGGAGGAGGTGACGCTGGAGCAACT
GGAGGCCCGGCTTGCAATGGCCGGTGGCGATGATGATGAAGAGGAGGACG
AGGAGGAGCTACGTGACCGTGAGAGAATAGCAGCCATCACGGACGAAGCT
ACGGTCACTTTCAAGAAGCACACCGCTCCTGTTTTCGCCTGCAGTCTGCA
TCCCAACTACAATTGGGCGGTGACGGGCAGCGAGGACGATCGAGCCTTCG
TTTGGGAAACCTCCACCGGCGATGTCCTCTACGAGATCACGGAGCACAAG
GACACCGTCACGGAAACGCATTTCAGTCACGACGGCGTCTATTTGGCCAC
CGGTGATCTAGCCGGCGATCTGTTTGTCTTCAAGGTCAGTGAAAAGCACG
ACGAACGTCCGATCCTGACTAAAATCTGGGAGTACTCCATGAGCGACATG
TCCTGGCTCTTCTGGCATCGAGCTGCCCACATCCTGCTGGCGGGTAGTGA
CAGCGGAGAGGTCTTCGTTTTCCGCATACCCAGCGGTGAATGCAAAATCC
TGCCGGGACAATCTTCGCGTTGCGAGTCCGGAGAGCTCAGTGGGGATGGC
AAAAAGCTGTTCACGGCCTACGTGAACGGATCCGTAAAGCTGTGGGATCT
CAAGAGCTGTCAGGTGCTCATTGACGTAAACGAATCGCATCCAATGGGTT
TCGGCGAGATCACGCACGCGGTGGTGGCCTGCGAAAGGGAATCGCCCTTC
TACGTCTGCGCTGAGGCGTCCGGAAAAATGCTGTTCTGCACTAACAACGG
TCCGGTTAGCACAATCCAGTCGGAACACGGTATTGAGTGTCTGGCCTTTG
CTCCCTCCTCGGCGGATCTAAAGCTCTTTGCCTGTGGCTCGCTGGACGGC
AGGATATCCATCTGGGACTATGCCAAATCAGCGTTGCGTACCATATGCGA
AAATCCAGTTCCCAATGATGCTGTCATAAGGATCAAATGGTTGAACGACC
ACACGATACTTGCGGCCACCTCGCAGGGAAATCTGAACGCATTCGACGCA
CGCACAGGAATTCTGAAATTCACTCTGACGGGACACTACTATCACATCTA
CGAGTTTGTCTACAAGCCTCAGGAAAATCTATTGCTAACGGTATCCGAGG
ACAACACGGCCAAGATATTCAAGGTGCCGGCGCTGGGCGATGCAAGCTTT
CTAGACCAT
BO04832.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-RA | 1278 | CG5114-PA | 1..1275 | 17..1291 | 6330 | 99.8 | Plus |
CG5114-RB | 1338 | CG5114-PB | 1..857 | 17..873 | 4270 | 99.9 | Plus |
CG5114-RB | 1338 | CG5114-PB | 917..1335 | 873..1291 | 2065 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-RA | 1440 | CG5114-RA | 101..1375 | 17..1291 | 6330 | 99.8 | Plus |
CG5114-RB | 1500 | CG5114-RB | 101..957 | 17..873 | 4270 | 99.9 | Plus |
CG5114-RB | 1500 | CG5114-RB | 1017..1435 | 873..1291 | 2065 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14982935..14983791 | 17..873 | 4270 | 99.9 | Plus |
3L | 28110227 | 3L | 14984209..14984421 | 1079..1291 | 1050 | 99.5 | Plus |
3L | 28110227 | 3L | 14983912..14984121 | 872..1081 | 1035 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:59:54 has no hits.
BO04832.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:47 Download gff for
BO04832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 1..1278 | 17..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:22 Download gff for
BO04832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 82..1367 | 7..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:13 Download gff for
BO04832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 101..1375 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:47 Download gff for
BO04832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 82..1367 | 7..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:59 Download gff for
BO04832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5114-RA | 101..1375 | 17..1293 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:59 Download gff for
BO04832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14982935..14983790 | 17..872 | 99 | -> | Plus |
3L | 14983913..14984120 | 873..1080 | 99 | -> | Plus |
3L | 14984211..14984421 | 1081..1293 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:13 Download gff for
BO04832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14976035..14976890 | 17..872 | 99 | -> | Plus |
arm_3L | 14977013..14977220 | 873..1080 | 99 | -> | Plus |
arm_3L | 14977311..14977521 | 1081..1293 | 98 | | Plus |
BO04832.pep Sequence
Translation from 16 to 1309
> BO04832.pep
MRDNTPPHRPDFDDGDDELQEIIELEEQPLDEDDDDLEEVTLEQLEARLA
MAGGDDDEEEDEEELRDRERIAAITDEATVTFKKHTAPVFACSLHPNYNW
AVTGSEDDRAFVWETSTGDVLYEITEHKDTVTETHFSHDGVYLATGDLAG
DLFVFKVSEKHDERPILTKIWEYSMSDMSWLFWHRAAHILLAGSDSGEVF
VFRIPSGECKILPGQSSRCESGELSGDGKKLFTAYVNGSVKLWDLKSCQV
LIDVNESHPMGFGEITHAVVACERESPFYVCAEASGKMLFCTNNGPVSTI
QSEHGIECLAFAPSSADLKLFACGSLDGRISIWDYAKSALRTICENPVPN
DAVIRIKWLNDHTILAATSQGNLNAFDARTGILKFTLTGHYYHIYEFVYK
PQENLLLTVSEDNTAKIFKVPALGDASFLDH
BO04832.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5114-PA | 425 | CG5114-PA | 1..425 | 1..425 | 2265 | 100 | Plus |
CG5114-PB | 445 | CG5114-PB | 1..445 | 1..425 | 2234 | 95.5 | Plus |