Clone BO04834 Report

Search the DGRC for BO04834

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptRbp1-RD
Protein status:BO04834.pep: validated full length
Sequenced Size:466

Clone Sequence Records

BO04834.5prime Sequence

464 bp (463 high quality bases) assembled on 2005-12-02

> BO04834.5prime
GAAGTTATCAGTCGACATGCCGCGATATAGGGAGTGGGACTTGGCCTGCA
AGGTGTACGTGGGAAACCTGGGCTCCTCGGCGTCCAAGCACGAGATAGAA
GGCGCATTTGCCAAATATGGACCCCTGCGAAACGTGTGGGTGGCCCGCAA
TCCACCAGGTTTCGCCTTTGTCGAATTTGAGGATCGCCGTGACGCGGAAG
ACGCAACGCGTGCCCTGGACGGAACACGCTGCTGCGGCACCAGGATTCGC
GTAGAGATGTCTTCGGGTCGCTCGCGCGATCGCCGGCGCGGAGAAGGCGG
CAGTAGTGGTCGCTCTGGTTCCGGACGCTACAGGATAACTCCTTCGGCTA
GAACTACTTCCACTGCTACTTCTTCCTTCTACAACATCAACAATCTACAA
CAGCAACCATCTTCACAGCCACAGCCAGCAACCTTCAACTTGCAACTCGC
AAGCTTTCTAGACC

BO04834.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17136-PD 435 Rbp1-RD 1..432 17..448 2135 99.7 Plus
CG17136-PA 408 Rbp1-RA 1..318 17..334 1565 99.6 Plus
CG17136-PB 321 Rbp1-RB 1..318 17..334 1565 99.6 Plus
CG17136-PC 408 Rbp1-RC 1..318 17..334 1565 99.6 Plus
CG1987-PA 477 Rbp1-like-RA 96..170 112..186 150 88 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-RD 1528 CG17136-RD 149..580 17..448 2145 99.8 Plus
Rbp1-RA 773 CG17136-RA 149..466 17..334 1575 99.7 Plus
Rbp1-like-RC 1456 CG1987-RC 208..434 35..261 475 80.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10784607..10784924 17..334 1575 99.7 Plus
3R 32079331 3R 10785400..10785517 331..448 590 100 Plus
X 23542271 X 13384444..13384670 261..35 475 80.6 Minus
Blast to na_te.dros performed on 2015-02-11 15:41:06 has no hits.

BO04834.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:03 Download gff for BO04834.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-PD 1..435 17..452 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:52 Download gff for BO04834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17136-PD 1..435 17..452 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:39 Download gff for BO04834.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 149..586 17..456 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:34 Download gff for BO04834.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 149..586 17..456 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:34 Download gff for BO04834.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10784607..10784923 17..333 99 -> Plus
3R 10785403..10785523 334..456 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:39 Download gff for BO04834.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6610329..6610645 17..333 99 -> Plus
arm_3R 6611125..6611245 334..456 96   Plus

BO04834.3prime Sequence

464 bp (463 high quality bases) assembled on 2005-12-02

> BO04834.3prime
ATGGTCTAGAAAGCTTGCGAGTTGCAAGTTGAAGGTTGCTGGCTGTGGCT
GTGAAGATGGTTGCTGTTGTAGATTGTTGATGTTGTAGAAGGAAGAAGTA
GCAGTGGAAGTAGTTCTAGCCGAAGGAGTTATCCTGTAGCGTCCGGAACC
AGAGCGACCACTACTGCCGCCTTCTCCGCGCCGGCGATCGCGCGAGCGAC
CCGAAGACATCTCTACGCGAATCCTGGTGCCGCAGCAGCGTGTTCCGTCC
AGGGCACGCGTTGCGTCTTCCGCGTCACGGCGATCCTCAAATTCGACAAA
GGCGAAACCTGGTGGATTGCGGGCCACCCACACGTTTCGCAGGGGTCCAT
ATTTGGCAAATGCGCCTTCTATCTCGTGCTTGGACGCCGAGGAGCCCAGG
TTTCCCACGTACACCTTGCAGGCCAAGTCCCACTCCCTATATCGCGGCAT
GTCGACTGATAACT

BO04834.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17136-PD 435 Rbp1-RD 1..432 450..19 2135 99.7 Minus
CG17136-PA 408 Rbp1-RA 1..318 450..133 1565 99.6 Minus
CG17136-PB 321 Rbp1-RB 1..318 450..133 1565 99.6 Minus
CG17136-PC 408 Rbp1-RC 1..318 450..133 1565 99.6 Minus
CG1987-PA 477 Rbp1-like-RA 96..170 355..281 150 88 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-RD 1528 CG17136-RD 149..580 450..19 2145 99.8 Minus
Rbp1-RA 773 CG17136-RA 149..466 450..133 1575 99.7 Minus
Rbp1-like-RC 1456 CG1987-RC 208..434 432..206 475 80.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10784607..10784924 450..133 1575 99.7 Minus
3R 32079331 3R 10785400..10785517 136..19 590 100 Minus
X 23542271 X 13384444..13384670 206..432 475 80.6 Plus
Blast to na_te.dros performed on 2015-02-13 02:13:17 has no hits.

BO04834.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:02 Download gff for BO04834.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-PD 1..435 15..450 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:51 Download gff for BO04834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17136-PD 1..435 15..450 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:18 Download gff for BO04834.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 149..586 11..450 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:40:54 Download gff for BO04834.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 149..586 11..450 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:40:54 Download gff for BO04834.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10784607..10784923 134..450 99 -> Minus
3R 10785403..10785523 11..133 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:18 Download gff for BO04834.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6610329..6610645 134..450 99 -> Minus
arm_3R 6611125..6611245 11..133 96   Minus

BO04834.complete Sequence

466 bp (466 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629885

> BO04834.complete
GAAGTTATCAGTCGACATGCCGCGATATAGGGAGTGGGACTTGGCCTGCA
AGGTGTACGTGGGAAACCTGGGCTCCTCGGCGTCCAAGCACGAGATAGAA
GGCGCATTTGCCAAATATGGACCCCTGCGAAACGTGTGGGTGGCCCGCAA
TCCACCAGGTTTCGCCTTTGTCGAATTTGAGGATCGCCGTGACGCGGAAG
ACGCAACGCGTGCCCTGGACGGAACACGCTGCTGCGGCACCAGGATTCGC
GTAGAGATGTCTTCGGGTCGCTCGCGCGATCGCCGGCGCGGAGAAGGCGG
CAGTAGTGGTCGCTCTGGTTCCGGACGCTACAGGATAACTCCTTCGGCTA
GAACTACTTCCACTGCTACTTCTTCCTTCTACAACATCAACAATCTACAA
CAGCAACCATCTTCACAGCCACAGCCAGCAACCTTCAACTTGCAACTCGC
AAGCTTTCTAGACCAT

BO04834.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-RD 435 CG17136-PD 1..432 17..448 2145 99.8 Plus
Rbp1-RA 408 CG17136-PA 1..318 17..334 1575 99.7 Plus
Rbp1-like-RC 477 CG1987-PC 19..245 35..261 475 80.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-RD 1528 CG17136-RD 149..580 17..448 2145 99.8 Plus
Rbp1-RA 773 CG17136-RA 149..466 17..334 1575 99.7 Plus
Rbp1-like-RC 1456 CG1987-RC 208..434 35..261 475 80.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10784607..10784924 17..334 1575 99.7 Plus
3R 32079331 3R 10785400..10785517 331..448 590 100 Plus
X 23542271 X 13384444..13384670 261..35 475 80.6 Minus
Blast to na_te.dros performed on 2014-11-27 01:00:04 has no hits.

BO04834.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:38 Download gff for BO04834.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 1..435 17..452 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:53 Download gff for BO04834.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 133..570 17..456 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:35 Download gff for BO04834.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 149..580 17..450 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:38 Download gff for BO04834.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 133..570 17..456 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:59 Download gff for BO04834.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RD 149..580 17..450 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:59 Download gff for BO04834.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10784607..10784923 17..333 99 -> Plus
3R 10785403..10785517 334..450 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:35 Download gff for BO04834.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6610329..6610645 17..333 99 -> Plus
arm_3R 6611125..6611239 334..450 98   Plus

BO04834.pep Sequence

Translation from 16 to 466

> BO04834.pep
MPRYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFA
FVEFEDRRDAEDATRALDGTRCCGTRIRVEMSSGRSRDRRRGEGGSSGRS
GSGRYRITPSARTTSTATSSFYNINNLQQQPSSQPQPATFNLQLASFLDH

BO04834.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-PD 144 CG17136-PD 1..144 1..144 761 100 Plus
Rbp1-PA 135 CG17136-PA 1..121 1..121 580 90.9 Plus
Rbp1-like-PB 247 CG1987-PB 1..142 1..118 490 69 Plus
Rbp1-like-PC 158 CG1987-PC 1..101 1..101 479 88.1 Plus
Rbp1-like-PA 158 CG1987-PA 1..101 1..101 479 88.1 Plus