Clone Sequence Records
BO04834.5prime Sequence
464 bp (463 high quality bases) assembled on 2005-12-02
> BO04834.5prime
GAAGTTATCAGTCGACATGCCGCGATATAGGGAGTGGGACTTGGCCTGCA
AGGTGTACGTGGGAAACCTGGGCTCCTCGGCGTCCAAGCACGAGATAGAA
GGCGCATTTGCCAAATATGGACCCCTGCGAAACGTGTGGGTGGCCCGCAA
TCCACCAGGTTTCGCCTTTGTCGAATTTGAGGATCGCCGTGACGCGGAAG
ACGCAACGCGTGCCCTGGACGGAACACGCTGCTGCGGCACCAGGATTCGC
GTAGAGATGTCTTCGGGTCGCTCGCGCGATCGCCGGCGCGGAGAAGGCGG
CAGTAGTGGTCGCTCTGGTTCCGGACGCTACAGGATAACTCCTTCGGCTA
GAACTACTTCCACTGCTACTTCTTCCTTCTACAACATCAACAATCTACAA
CAGCAACCATCTTCACAGCCACAGCCAGCAACCTTCAACTTGCAACTCGC
AAGCTTTCTAGACC
BO04834.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17136-PD | 435 | Rbp1-RD | 1..432 | 17..448 | 2135 | 99.7 | Plus |
CG17136-PA | 408 | Rbp1-RA | 1..318 | 17..334 | 1565 | 99.6 | Plus |
CG17136-PB | 321 | Rbp1-RB | 1..318 | 17..334 | 1565 | 99.6 | Plus |
CG17136-PC | 408 | Rbp1-RC | 1..318 | 17..334 | 1565 | 99.6 | Plus |
CG1987-PA | 477 | Rbp1-like-RA | 96..170 | 112..186 | 150 | 88 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-RD | 1528 | CG17136-RD | 149..580 | 17..448 | 2145 | 99.8 | Plus |
Rbp1-RA | 773 | CG17136-RA | 149..466 | 17..334 | 1575 | 99.7 | Plus |
Rbp1-like-RC | 1456 | CG1987-RC | 208..434 | 35..261 | 475 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:41:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10784607..10784924 | 17..334 | 1575 | 99.7 | Plus |
3R | 32079331 | 3R | 10785400..10785517 | 331..448 | 590 | 100 | Plus |
X | 23542271 | X | 13384444..13384670 | 261..35 | 475 | 80.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:41:06 has no hits.
BO04834.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:03 Download gff for
BO04834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-PD | 1..435 | 17..452 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:52 Download gff for
BO04834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17136-PD | 1..435 | 17..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:39 Download gff for
BO04834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 149..586 | 17..456 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:34 Download gff for
BO04834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 149..586 | 17..456 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:34 Download gff for
BO04834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10784607..10784923 | 17..333 | 99 | -> | Plus |
3R | 10785403..10785523 | 334..456 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:39 Download gff for
BO04834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6610329..6610645 | 17..333 | 99 | -> | Plus |
arm_3R | 6611125..6611245 | 334..456 | 96 | | Plus |
BO04834.3prime Sequence
464 bp (463 high quality bases) assembled on 2005-12-02
> BO04834.3prime
ATGGTCTAGAAAGCTTGCGAGTTGCAAGTTGAAGGTTGCTGGCTGTGGCT
GTGAAGATGGTTGCTGTTGTAGATTGTTGATGTTGTAGAAGGAAGAAGTA
GCAGTGGAAGTAGTTCTAGCCGAAGGAGTTATCCTGTAGCGTCCGGAACC
AGAGCGACCACTACTGCCGCCTTCTCCGCGCCGGCGATCGCGCGAGCGAC
CCGAAGACATCTCTACGCGAATCCTGGTGCCGCAGCAGCGTGTTCCGTCC
AGGGCACGCGTTGCGTCTTCCGCGTCACGGCGATCCTCAAATTCGACAAA
GGCGAAACCTGGTGGATTGCGGGCCACCCACACGTTTCGCAGGGGTCCAT
ATTTGGCAAATGCGCCTTCTATCTCGTGCTTGGACGCCGAGGAGCCCAGG
TTTCCCACGTACACCTTGCAGGCCAAGTCCCACTCCCTATATCGCGGCAT
GTCGACTGATAACT
BO04834.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17136-PD | 435 | Rbp1-RD | 1..432 | 450..19 | 2135 | 99.7 | Minus |
CG17136-PA | 408 | Rbp1-RA | 1..318 | 450..133 | 1565 | 99.6 | Minus |
CG17136-PB | 321 | Rbp1-RB | 1..318 | 450..133 | 1565 | 99.6 | Minus |
CG17136-PC | 408 | Rbp1-RC | 1..318 | 450..133 | 1565 | 99.6 | Minus |
CG1987-PA | 477 | Rbp1-like-RA | 96..170 | 355..281 | 150 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-RD | 1528 | CG17136-RD | 149..580 | 450..19 | 2145 | 99.8 | Minus |
Rbp1-RA | 773 | CG17136-RA | 149..466 | 450..133 | 1575 | 99.7 | Minus |
Rbp1-like-RC | 1456 | CG1987-RC | 208..434 | 432..206 | 475 | 80.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10784607..10784924 | 450..133 | 1575 | 99.7 | Minus |
3R | 32079331 | 3R | 10785400..10785517 | 136..19 | 590 | 100 | Minus |
X | 23542271 | X | 13384444..13384670 | 206..432 | 475 | 80.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:13:17 has no hits.
BO04834.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:02 Download gff for
BO04834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-PD | 1..435 | 15..450 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:51 Download gff for
BO04834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17136-PD | 1..435 | 15..450 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:18 Download gff for
BO04834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 149..586 | 11..450 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:40:54 Download gff for
BO04834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 149..586 | 11..450 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:40:54 Download gff for
BO04834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10784607..10784923 | 134..450 | 99 | -> | Minus |
3R | 10785403..10785523 | 11..133 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:18 Download gff for
BO04834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6610329..6610645 | 134..450 | 99 | -> | Minus |
arm_3R | 6611125..6611245 | 11..133 | 96 | | Minus |
BO04834.complete Sequence
466 bp (466 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629885
> BO04834.complete
GAAGTTATCAGTCGACATGCCGCGATATAGGGAGTGGGACTTGGCCTGCA
AGGTGTACGTGGGAAACCTGGGCTCCTCGGCGTCCAAGCACGAGATAGAA
GGCGCATTTGCCAAATATGGACCCCTGCGAAACGTGTGGGTGGCCCGCAA
TCCACCAGGTTTCGCCTTTGTCGAATTTGAGGATCGCCGTGACGCGGAAG
ACGCAACGCGTGCCCTGGACGGAACACGCTGCTGCGGCACCAGGATTCGC
GTAGAGATGTCTTCGGGTCGCTCGCGCGATCGCCGGCGCGGAGAAGGCGG
CAGTAGTGGTCGCTCTGGTTCCGGACGCTACAGGATAACTCCTTCGGCTA
GAACTACTTCCACTGCTACTTCTTCCTTCTACAACATCAACAATCTACAA
CAGCAACCATCTTCACAGCCACAGCCAGCAACCTTCAACTTGCAACTCGC
AAGCTTTCTAGACCAT
BO04834.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-RD | 435 | CG17136-PD | 1..432 | 17..448 | 2145 | 99.8 | Plus |
Rbp1-RA | 408 | CG17136-PA | 1..318 | 17..334 | 1575 | 99.7 | Plus |
Rbp1-like-RC | 477 | CG1987-PC | 19..245 | 35..261 | 475 | 80.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-RD | 1528 | CG17136-RD | 149..580 | 17..448 | 2145 | 99.8 | Plus |
Rbp1-RA | 773 | CG17136-RA | 149..466 | 17..334 | 1575 | 99.7 | Plus |
Rbp1-like-RC | 1456 | CG1987-RC | 208..434 | 35..261 | 475 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10784607..10784924 | 17..334 | 1575 | 99.7 | Plus |
3R | 32079331 | 3R | 10785400..10785517 | 331..448 | 590 | 100 | Plus |
X | 23542271 | X | 13384444..13384670 | 261..35 | 475 | 80.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:00:04 has no hits.
BO04834.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:38 Download gff for
BO04834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 1..435 | 17..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:53 Download gff for
BO04834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 133..570 | 17..456 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:35 Download gff for
BO04834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 149..580 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:38 Download gff for
BO04834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 133..570 | 17..456 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:59 Download gff for
BO04834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-RD | 149..580 | 17..450 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:59 Download gff for
BO04834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10784607..10784923 | 17..333 | 99 | -> | Plus |
3R | 10785403..10785517 | 334..450 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:35 Download gff for
BO04834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6610329..6610645 | 17..333 | 99 | -> | Plus |
arm_3R | 6611125..6611239 | 334..450 | 98 | | Plus |
BO04834.pep Sequence
Translation from 16 to 466
> BO04834.pep
MPRYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFA
FVEFEDRRDAEDATRALDGTRCCGTRIRVEMSSGRSRDRRRGEGGSSGRS
GSGRYRITPSARTTSTATSSFYNINNLQQQPSSQPQPATFNLQLASFLDH
BO04834.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-PD | 144 | CG17136-PD | 1..144 | 1..144 | 761 | 100 | Plus |
Rbp1-PA | 135 | CG17136-PA | 1..121 | 1..121 | 580 | 90.9 | Plus |
Rbp1-like-PB | 247 | CG1987-PB | 1..142 | 1..118 | 490 | 69 | Plus |
Rbp1-like-PC | 158 | CG1987-PC | 1..101 | 1..101 | 479 | 88.1 | Plus |
Rbp1-like-PA | 158 | CG1987-PA | 1..101 | 1..101 | 479 | 88.1 | Plus |