Clone Sequence Records
BO04836.3prime Sequence
956 bp (851 high quality bases) assembled on 2005-12-02
> BO04836.3prime
ATGGTCTAGAAAGCTTGCGGGCAGATTGCAGCCCACCTGGGTGACGACCT
TGGCGGCTACGCTGGAGGCCATTCGGATGCACTCGCCCAGCGAGCGCTTC
TCCAGCCAGGCGTGCAAGAATCCGGCCACAAAAGCATCTCCGGCCCCAGT
GGCATCCACCAGCTGCTCTACGCGCTGCGCCCTGAAGTCCTCAAAGCTTA
CGGGTCCGGGAGGAGCCAGCTCCTCCACGTAGTTGGTGATCACCTGGACG
CCGGCACTGCCGTTGGTGACGAAGATGACCTTGGTGCCACCGGATTGCAG
GAGATGATCCGCCAGTTCGTCGACGTTTCGGAACCCACCCGCAGCCTCGG
CCAGCGCCTCGAACTCCTGTCGGTTTCCGAACAGGAAGAAGGCGGCCCGG
GCCAGCTTCATCATAGCCTGGTGATTTTTCCTCACAATGTAGGGTGCACT
GAGATTGAGAGCCAGGCGTCGCCGCTCCCGCACCAGGTGCTGCACTATGT
AATCGCACACATCACTCCTCTGGGGCACAAAGAAGCCCTCCACGTACAGG
ATTTGCTTGCGCTCCACCGGTCGCAGGAAGCTCTGGCCTTCGTGGCTGAC
GGCGTGGCTCAGGGTCTGCACCTCGAACTGAGCCGAGGCGCCGATGTTGG
CGTACAGCGTGGGGTTGTCCTGATACATGAGGCACACGCACTGCCCTGTG
TGCGCATCCTCGACGGTCTGCAGCCTGGCCTCGATGCCGCGATCCCGAAT
GATCTGGCGCAGCTCCTCGGCGTGCTTGTCGGCTCCCACGGCGCCAAAGA
AGAGCGCGTCTGTGCCCAGCTGCTTCAGGATGCGGGCAGTGTTGAGGGCA
GAGCCACCCGGGTTTGTAAGGCACCGAGAGCTCTCAGAAGCCTCCGCTGC
CAGCTGGTTGAGTTTTCTCATGTCCAGTTCACCCTTGGAGCCCAGTTCCA
GGCCCG
BO04836.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1851-PA | 1101 | Ady43A-RA | 202..1098 | 915..19 | 4485 | 100 | Minus |
CG1851-PA | 1101 | Ady43A-RA | 163..198 | 954..919 | 180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ady43A-RA | 2203 | CG1851-RA | 638..1573 | 954..19 | 4635 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7243654..7244517 | 19..882 | 4320 | 100 | Plus |
2R | 25286936 | 2R | 7244988..7245061 | 881..954 | 325 | 95.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:13:23 has no hits.
BO04836.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:05 Download gff for
BO04836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1851-PA | 162..1101 | 18..956 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:56 Download gff for
BO04836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1851-PA | 162..1101 | 18..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:21 Download gff for
BO04836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ady43A-RA | 637..1573 | 19..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:41:14 Download gff for
BO04836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ady43A-RA | 637..1573 | 19..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:41:14 Download gff for
BO04836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7243654..7244515 | 19..880 | 100 | <- | Plus |
2R | 7244988..7245062 | 881..956 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:21 Download gff for
BO04836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3131159..3132020 | 19..880 | 100 | <- | Plus |
arm_2R | 3132493..3132567 | 881..956 | 96 | | Plus |
BO04836.5prime Sequence
833 bp (811 high quality bases) assembled on 2005-11-29
> BO04836.5prime
GAAGTTATCAGTCGACATGGAGTACCTGAGCTACGTGTACGAAAAAATCT
TCGGGGGCAATCCTCCCACGGATGACACGCAAGGGGCTTTCCACACGCCC
CGCAAGGTCATCTGCTTCGGCAACGTCCTGCTCGACCGACTAGTCCAGCT
CGAGGATCCCCAACTCCTGGAGCGGTTCGGCCTGGAACTGGGCTCCAAGG
GTGAACTGGACATGGAGAAACTCAACCAGCTGGCAGCGGAGGCTTCTGAG
AGCTCTCGGTGCCTTACAAACCCGGGTGGCTCTGCCCTCAACACTGCCCG
CATCCTGAAGCAGCTGGGCACAGACGCGCTCTTCTTTGGCGCCGTGGGAG
CCGACAAGCACGCCGAGGAGCTGCGCCAGATCATTCGGGATCGCGGCATC
GAGGCCAGGCTGCAGACCGTCGAGGATGCGCACACAGGGCAGTGCGTGTG
CCTCATGTATCAGGACAACCCCACGCTGTACGCCAACATCGGCGCCTCGG
CTCAGTTCGAGGTGCAGACCCTGAGCCACGCCGTCAGCCACGAAGGCCAG
AGCTTCCTGCGACCGGTGGAGCGCAAGCAAATCCTGTACGTGGAGGGCTT
CTTTGTGCCCCAGAGGAGTGATGTGTGCGATTACATAGTGCAGCACCTGG
TGCGGGAGCGGCGACGCCTGGCTCTCAATCTCAGTGCACCCTACATTGTG
AGGAAAAATCACCAGGCTATGATGAAGCTGGCCCGGGCCGCCTTCTTCCT
GTTCGGAAACCGACAGGAGTTCGAGGCGCTGGCCGAGGCTGCGGGTGGGT
TCCGAAACGTCGACGAACTGGCGGATCATCTCC
BO04836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1851-PA | 1101 | Ady43A-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ady43A-RA | 2203 | CG1851-RA | 476..1292 | 17..833 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7243935..7244517 | 833..251 | 2915 | 100 | Minus |
2R | 25286936 | 2R | 7244988..7245143 | 252..97 | 780 | 100 | Minus |
2R | 25286936 | 2R | 7245221..7245301 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:29:47 has no hits.
BO04836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:06 Download gff for
BO04836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1851-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:57 Download gff for
BO04836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1851-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:50 Download gff for
BO04836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ady43A-RA | 470..1292 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:35:19 Download gff for
BO04836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ady43A-RA | 470..1292 | 9..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:35:19 Download gff for
BO04836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7243935..7244515 | 253..833 | 100 | <- | Minus |
2R | 7244988..7245143 | 97..252 | 100 | <- | Minus |
2R | 7245222..7245307 | 9..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:50 Download gff for
BO04836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3131440..3132020 | 253..833 | 100 | <- | Minus |
arm_2R | 3132493..3132648 | 97..252 | 100 | <- | Minus |
arm_2R | 3132727..3132812 | 9..96 | 95 | | Minus |
BO04836.complete Sequence
1132 bp (1132 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629886
> BO04836.complete
GAAGTTATCAGTCGACATGGAGTACCTGAGCTACGTGTACGAAAAAATCT
TCGGGGGCAATCCTCCCACGGATGACACGCAAGGGGCTTTCCACACGCCC
CGCAAGGTCATCTGCTTCGGCAACGTCCTGCTCGACCGACTAGTCCAGCT
CGAGGATCCCCAACTCCTGGAGCGGTTCGGCCTGGAACTGGGCTCCAAGG
GTGAACTGGACATGGAGAAACTCAACCAGCTGGCAGCGGAGGCTTCTGAG
AGCTCTCGGTGCCTTACAAACCCGGGTGGCTCTGCCCTCAACACTGCCCG
CATCCTGAAGCAGCTGGGCACAGACGCGCTCTTCTTTGGCGCCGTGGGAG
CCGACAAGCACGCCGAGGAGCTGCGCCAGATCATTCGGGATCGCGGCATC
GAGGCCAGGCTGCAGACCGTCGAGGATGCGCACACAGGGCAGTGCGTGTG
CCTCATGTATCAGGACAACCCCACGCTGTACGCCAACATCGGCGCCTCGG
CTCAGTTCGAGGTGCAGACCCTGAGCCACGCCGTCAGCCACGAAGGCCAG
AGCTTCCTGCGACCGGTGGAGCGCAAGCAAATCCTGTACGTGGAGGGCTT
CTTTGTGCCCCAGAGGAGTGATGTGTGCGATTACATAGTGCAGCACCTGG
TGCGGGAGCGGCGACGCCTGGCTCTCAATCTCAGTGCACCCTACATTGTG
AGGAAAAATCACCAGGCTATGATGAAGCTGGCCCGGGCCGCCTTCTTCCT
GTTCGGAAACCGACAGGAGTTCGAGGCGCTGGCCGAGGCTGCGGGTGGGT
TCCGAAACGTCGACGAACTGGCGGATCATCTCCTGCAATCCGGTGGCACC
AAGGTCATCTTCGTCACCAACGGCAGTGCCGGCGTCCAGGTGATCACCAA
CTACGTGGAGGAGCTGGCTCCTCCCGGACCCGTAAGCTTTGAGGACTTCA
GGGCGCAGCGCGTAGAGCAGCTGGTGGATGCCACTGGGGCCGGAGATGCT
TTTGTGGCCGGATTCTTGCACGCCTGGCTGGAGAAGCGCTCGCTGGGCGA
GTGCATCCGAATGGCCTCCAGCGTAGCCGCCAAGGTCGTCACCCAGGTGG
GCTGCAATCTGCCCGCAAGCTTTCTAGACCAT
BO04836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:29:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ady43A-RA | 1101 | CG1851-PA | 1..1098 | 17..1114 | 5490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ady43A-RA | 2203 | CG1851-RA | 476..1573 | 17..1114 | 5490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:29:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7243654..7244517 | 1114..251 | 4320 | 100 | Minus |
2R | 25286936 | 2R | 7244988..7245143 | 252..97 | 780 | 100 | Minus |
2R | 25286936 | 2R | 7245221..7245301 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:29:21 has no hits.
BO04836.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:49 Download gff for
BO04836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ady43A-RA | 1..1101 | 17..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:24 Download gff for
BO04836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ady43A-RA | 452..1555 | 9..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:20 Download gff for
BO04836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ady43A-RA | 476..1573 | 17..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:49 Download gff for
BO04836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ady43A-RA | 452..1555 | 9..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:41 Download gff for
BO04836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ady43A-RA | 476..1573 | 17..1116 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:41 Download gff for
BO04836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7243652..7244515 | 253..1116 | 99 | <- | Minus |
2R | 7244988..7245143 | 97..252 | 100 | <- | Minus |
2R | 7245222..7245301 | 17..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:20 Download gff for
BO04836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3131157..3132020 | 253..1116 | 99 | <- | Minus |
arm_2R | 3132493..3132648 | 97..252 | 100 | <- | Minus |
arm_2R | 3132727..3132806 | 17..96 | 100 | | Minus |
BO04836.pep Sequence
Translation from 16 to 1132
> BO04836.pep
MEYLSYVYEKIFGGNPPTDDTQGAFHTPRKVICFGNVLLDRLVQLEDPQL
LERFGLELGSKGELDMEKLNQLAAEASESSRCLTNPGGSALNTARILKQL
GTDALFFGAVGADKHAEELRQIIRDRGIEARLQTVEDAHTGQCVCLMYQD
NPTLYANIGASAQFEVQTLSHAVSHEGQSFLRPVERKQILYVEGFFVPQR
SDVCDYIVQHLVRERRRLALNLSAPYIVRKNHQAMMKLARAAFFLFGNRQ
EFEALAEAAGGFRNVDELADHLLQSGGTKVIFVTNGSAGVQVITNYVEEL
APPGPVSFEDFRAQRVEQLVDATGAGDAFVAGFLHAWLEKRSLGECIRMA
SSVAAKVVTQVGCNLPASFLDH
BO04836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ady43A-PA | 366 | CG1851-PA | 1..366 | 1..366 | 1877 | 100 | Plus |
CG3809-PA | 396 | CG3809-PA | 60..385 | 34..365 | 272 | 25 | Plus |
AdenoK-PC | 345 | CG11255-PC | 64..335 | 87..363 | 267 | 28 | Plus |
AdenoK-PB | 345 | CG11255-PB | 64..335 | 87..363 | 267 | 28 | Plus |
AdenoK-PA | 345 | CG11255-PA | 64..335 | 87..363 | 267 | 28 | Plus |