Clone Sequence Records
BO04837.3prime Sequence
895 bp (831 high quality bases) assembled on 2005-12-02
> BO04837.3prime
ATGGTCTAGAAAGCTTGCAACGGTCCTCGCGTTCAGAATGGGGGTATCTC
GGAAGTGCAGCTCCTGTGAGGCGGGTGTCTGCTGATACTCCACCACCACC
AGTCGATTTGAGCCCGCCTTGAGCACGGCGGCCGGAACATACAGGGTGAC
TTGAGGTCCCACCAGGGGCCAATACCTGCCGAGATTTTCGCCATTCACAA
AGACAATGCCCTTGCCCCAGCCGGACATGTCCAGATAGGTGTCCGCCAGA
TCAGATTCCTTTTGGATGTCCAGTTGACCGTGGTAAATGGCGGGACCAGT
GCGCAGCATTGTGCGCAACTTCTTTAGCTCCTGGAAGCCCTGACGAACTG
CCTCATCCGACTGGGTAATCAGCTGCTCCAGGTTGTCGTACGATTCGAGT
GGGAATTGGGTCATGTTCCAGTTGCTCAGCACCTGCTTGTCCAGTCGAAC
ATCCCGCAGGATGCCCTTAAAATCGTTCAACTGTCGACCGTAGTTGATGC
GACCCTGGTTCTCTACGATAATCTGGAACCTCCGCCCGGCACTTGCACTG
AGTGGCAATTCGAACACGGGGGTTTCCCTGGCCAGAATACCCACGAACTC
ACCATCCACATAAACGTAACCTCGATCCGCCAGTCCGGGAACGCTAAGGA
TGCTCGGATCCCGCTGGAAGCTGGGCAACCAGGTCTCGTAGAGCACCAAA
CCAGAGTACTGTCCCAAAGCCTCGAAGCTCTTCGGCTTGGCGGACTGCAC
AAATCCAGTGGAGAGACGAGATCGAGCCTCCGACGAAAGCAGACTACAGC
AGGTGGTCAGACGCACAGTTCCGTAGGATCGCTTGGGTACGGGTCCGGGC
ACGGGTTGATTTGGCAGCGGGAGATAGCGGCCAATGATGCGTCGC
BO04837.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3132-PA | 1914 | Ect3-RA | 1035..1911 | 895..19 | 4385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ect3-RA | 2236 | CG3132-RA | 1198..2074 | 895..19 | 4385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12002478..12003354 | 895..19 | 4385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:55:34 has no hits.
BO04837.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:07 Download gff for
BO04837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-PA | 1035..1914 | 18..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:58 Download gff for
BO04837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3132-PA | 1035..1914 | 18..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:43:19 Download gff for
BO04837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 1198..2074 | 19..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:49 Download gff for
BO04837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 1198..2074 | 19..895 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:49 Download gff for
BO04837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12002478..12003354 | 19..895 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:43:19 Download gff for
BO04837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7828200..7829076 | 19..895 | 100 | | Minus |
BO04837.5prime Sequence
827 bp (826 high quality bases) assembled on 2005-12-02
> BO04837.5prime
GAAGTTATCAGTCGACATGAAGTTCAGTGTGGTGGTCCTGGTGGCCCTAC
TACCGCTGCTAGGAGCTGTTTCAGCGAATCGCACTTTTGTGGTGGACTAC
GAAAAGGATCAGTTCCTAAAGGATGGAGAACCATTCCGATTCATTGCCGG
CTCCTTCCACTACTTCCGTGCTCATCCAGCCACCTGGCAAAGGCATCTTA
GGACCATGAGAGCTGCGGGTCTGAATGCGGTGACAACCTATGTGGAGTGG
TCATTGCACAATCCGCGGGATGGCGTTTATGTGTGGAGCGGCATTGCCGA
TCTGGAACACTTTATACGCCTGGCCGTGGGCGAGGATCTGCTGGTCATCC
TCCGTCCGGGTCCGTATATTTGTGCGGAGCGTGACATGGGCGGCTTTCCC
TACTGGCTGCTGAATAAGTATCCGGGCATTCAGCTCCGGACAGCAGATGT
CAATTATCTTAGCGAAATTCGCATTTGGTATACCCAACTGTTTGCCAAAA
TGAATAAATATCTGTATGGCAATGGTGGGCCAATTATAATGGTTCAGGTG
GAGAACGAATATGGCTCCTTCTATGCCTGCGATCTCAACTATCGGAATTG
GCTACGCGATGAGACCGAGAGTCATGTCAAAGGTCAGGCGGTGCTCTTCA
CCAACGATGGACCCAGTGTGCTGCGCTGTGGAAAAATCCAGGGCGTCCTA
GCGACCATGGACTTTGGAGCAACGAACGATCTCAAGCCCATTTGGGCCAA
GTTTAGAAGGTACCAGCCAAAGGGTCCGCTGGTCAATGCGGAATACTATC
CCGGTTGGCTAACTCACTGGACGGAGC
BO04837.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3132-PA | 1914 | Ect3-RA | 1..811 | 17..827 | 4055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ect3-RA | 2236 | CG3132-RA | 164..974 | 17..827 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12001776..12002150 | 453..827 | 1875 | 100 | Plus |
3R | 32079331 | 3R | 12001210..12001430 | 17..237 | 1105 | 100 | Plus |
3R | 32079331 | 3R | 12001482..12001701 | 233..452 | 1085 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:28:34 has no hits.
BO04837.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:08 Download gff for
BO04837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:00 Download gff for
BO04837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3132-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:24 Download gff for
BO04837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 154..974 | 7..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:15:18 Download gff for
BO04837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 154..974 | 7..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:15:18 Download gff for
BO04837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12001487..12001701 | 238..452 | 100 | -> | Plus |
3R | 12001208..12001430 | 14..237 | 99 | -> | Plus |
3R | 12001776..12002150 | 453..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:24 Download gff for
BO04837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7826930..7827152 | 14..237 | 99 | -> | Plus |
arm_3R | 7827209..7827423 | 238..452 | 100 | -> | Plus |
arm_3R | 7827498..7827872 | 453..827 | 100 | | Plus |
BO04837.complete Sequence
1945 bp (1945 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629887
> BO04837.complete
GAAGTTATCAGTCGACATGAAGTTCAGTGTGGTGGTCCTGGTGGCCCTAC
TACCGCTGCTAGGAGCTGTTTCAGCGAATCGCACTTTTGTGGTGGACTAC
GAAAAGGATCAGTTCCTAAAGGATGGAGAACCATTCCGATTCATTGCCGG
CTCCTTCCACTACTTCCGTGCTCATCCAGCCACCTGGCAAAGGCATCTTA
GGACCATGAGAGCTGCGGGTCTGAATGCGGTGACAACCTATGTGGAGTGG
TCATTGCACAATCCGCGGGATGGCGTTTATGTGTGGAGCGGCATTGCCGA
TCTGGAACACTTTATACGCCTGGCCGTGGGCGAGGATCTGCTGGTCATCC
TCCGTCCGGGTCCGTATATTTGTGCGGAGCGTGACATGGGCGGCTTTCCC
TACTGGCTGCTGAATAAGTATCCGGGCATTCAGCTCCGGACAGCAGATGT
CAATTATCTTAGCGAAATTCGCATTTGGTATACCCAACTGTTTGCCAAAA
TGAATAAATATCTGTATGGCAATGGTGGGCCAATTATAATGGTTCAGGTG
GAGAACGAATATGGCTCCTTCTATGCCTGCGATCTCAACTATCGGAATTG
GCTACGCGATGAGACCGAGAGTCATGTCAAAGGTCAGGCGGTGCTCTTCA
CCAACGATGGACCCAGTGTGCTGCGCTGTGGAAAAATCCAGGGCGTCCTA
GCGACCATGGACTTTGGAGCAACGAACGATCTCAAGCCCATTTGGGCCAA
GTTTAGAAGGTACCAGCCAAAGGGTCCGCTGGTCAATGCGGAATACTATC
CCGGTTGGCTAACTCACTGGACGGAGCCGATGGCCAATGTTAGCACCCAA
TCGATTACTTCCACTTTTATAAACATGCTGGATCATGGTGCCAGTGTGAA
CTTCTACATGTTCTACGGCGGCACCAACTTCGGATTCACAGCTGGTGCCA
ATGACATTGGACCCGGAAACTACATGGCTGACATTACCAGCTACGACTAC
GATGCACCCATGACGGAGGCGGGGGATCCCACTCCCAAATACCAGGCCCT
GCGACGCATCATTGGCCGCTATCTCCCGCTGCCAAATCAACCCGTGCCCG
GACCCGTACCCAAGCGATCCTACGGAACTGTGCGTCTGACCACCTGCTGT
AGTCTGCTTTCGTCGGAGGCTCGATCTCGTCTCTCCACTGGATTTGTGCA
GTCCGCCAAGCCGAAGAGCTTCGAGGCTTTGGGACAGTACTCTGGTTTGG
TGCTCTACGAGACCTGGTTGCCCAGCTTCCAGCGGGATCCGAGCATCCTT
AGCGTTCCCGGACTGGCGGATCGAGGTTACGTTTATGTGGATGGTGAGTT
CGTGGGTATTCTGGCCAGGGAAACCCCCGTGTTCGAATTGCCACTCAGTG
CAAGTGCCGGGCGGAGGTTCCAGATTATCGTAGAGAACCAGGGTCGCATC
AACTACGGTCGACAGTTGAACGATTTTAAGGGCATCCTGCGGGATGTTCG
ACTGGACAAGCAGGTGCTGAGCAACTGGAACATGACCCAATTCCCACTCG
AATCGTACGACAACCTGGAGCAGCTGATTACCCAGTCGGATGAGGCAGTT
CGTCAGGGCTTCCAGGAGCTAAAGAAGTTGCGCACAATGCTGCGCACTGG
TCCCGCCATTTACCACGGTCAACTGGACATCCAAAAGGAATCTGATCTGG
CGGACACCTATCTGGACATGTCCGGCTGGGGCAAGGGCATTGTCTTTGTG
AATGGCGAAAATCTCGGCAGGTATTGGCCCCTGGTGGGACCTCAAGTCAC
CCTGTATGTTCCGGCCGCCGTGCTCAAGGCGGGCTCAAATCGACTGGTGG
TGGTGGAGTATCAGCAGACACCCGCCTCACAGGAGCTGCACTTCCGAGAT
ACCCCCATTCTGAACGCGAGGACCGTTGCAAGCTTTCTAGACCAT
BO04837.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ect3-RA | 1914 | CG3132-PA | 1..1911 | 17..1927 | 9555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ect3-RA | 2236 | CG3132-RA | 164..2074 | 17..1927 | 9555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12002298..12003354 | 871..1927 | 5285 | 100 | Plus |
3R | 32079331 | 3R | 12001776..12002193 | 453..870 | 2090 | 100 | Plus |
3R | 32079331 | 3R | 12001210..12001430 | 17..237 | 1105 | 100 | Plus |
3R | 32079331 | 3R | 12001482..12001701 | 233..452 | 1085 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:47:36 has no hits.
BO04837.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:13 Download gff for
BO04837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 1..1914 | 17..1928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:17 Download gff for
BO04837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 125..2045 | 7..1927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:39 Download gff for
BO04837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 164..2074 | 17..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:13 Download gff for
BO04837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 125..2045 | 7..1927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:36 Download gff for
BO04837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ect3-RA | 164..2074 | 17..1929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:36 Download gff for
BO04837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12001210..12001430 | 17..237 | 100 | -> | Plus |
3R | 12001487..12001701 | 238..452 | 100 | -> | Plus |
3R | 12001776..12002193 | 453..870 | 100 | -> | Plus |
3R | 12002298..12003354 | 871..1929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:39 Download gff for
BO04837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7826932..7827152 | 17..237 | 100 | -> | Plus |
arm_3R | 7827209..7827423 | 238..452 | 100 | -> | Plus |
arm_3R | 7827498..7827915 | 453..870 | 100 | -> | Plus |
arm_3R | 7828020..7829076 | 871..1929 | 99 | | Plus |
BO04837.pep Sequence
Translation from 16 to 1945
> BO04837.pep
MKFSVVVLVALLPLLGAVSANRTFVVDYEKDQFLKDGEPFRFIAGSFHYF
RAHPATWQRHLRTMRAAGLNAVTTYVEWSLHNPRDGVYVWSGIADLEHFI
RLAVGEDLLVILRPGPYICAERDMGGFPYWLLNKYPGIQLRTADVNYLSE
IRIWYTQLFAKMNKYLYGNGGPIIMVQVENEYGSFYACDLNYRNWLRDET
ESHVKGQAVLFTNDGPSVLRCGKIQGVLATMDFGATNDLKPIWAKFRRYQ
PKGPLVNAEYYPGWLTHWTEPMANVSTQSITSTFINMLDHGASVNFYMFY
GGTNFGFTAGANDIGPGNYMADITSYDYDAPMTEAGDPTPKYQALRRIIG
RYLPLPNQPVPGPVPKRSYGTVRLTTCCSLLSSEARSRLSTGFVQSAKPK
SFEALGQYSGLVLYETWLPSFQRDPSILSVPGLADRGYVYVDGEFVGILA
RETPVFELPLSASAGRRFQIIVENQGRINYGRQLNDFKGILRDVRLDKQV
LSNWNMTQFPLESYDNLEQLITQSDEAVRQGFQELKKLRTMLRTGPAIYH
GQLDIQKESDLADTYLDMSGWGKGIVFVNGENLGRYWPLVGPQVTLYVPA
AVLKAGSNRLVVVEYQQTPASQELHFRDTPILNARTVASFLDH
BO04837.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ect3-PA | 637 | CG3132-PA | 1..637 | 1..637 | 3388 | 100 | Plus |
Gal-PA | 672 | CG9092-PA | 23..660 | 1..638 | 1626 | 51.1 | Plus |
Gal-PB | 670 | CG9092-PB | 44..658 | 24..638 | 1624 | 52.2 | Plus |