Clone BO04837 Report

Search the DGRC for BO04837

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptEct3-RA
Protein status:BO04837.pep: validated full length
Sequenced Size:1945

Clone Sequence Records

BO04837.3prime Sequence

895 bp (831 high quality bases) assembled on 2005-12-02

> BO04837.3prime
ATGGTCTAGAAAGCTTGCAACGGTCCTCGCGTTCAGAATGGGGGTATCTC
GGAAGTGCAGCTCCTGTGAGGCGGGTGTCTGCTGATACTCCACCACCACC
AGTCGATTTGAGCCCGCCTTGAGCACGGCGGCCGGAACATACAGGGTGAC
TTGAGGTCCCACCAGGGGCCAATACCTGCCGAGATTTTCGCCATTCACAA
AGACAATGCCCTTGCCCCAGCCGGACATGTCCAGATAGGTGTCCGCCAGA
TCAGATTCCTTTTGGATGTCCAGTTGACCGTGGTAAATGGCGGGACCAGT
GCGCAGCATTGTGCGCAACTTCTTTAGCTCCTGGAAGCCCTGACGAACTG
CCTCATCCGACTGGGTAATCAGCTGCTCCAGGTTGTCGTACGATTCGAGT
GGGAATTGGGTCATGTTCCAGTTGCTCAGCACCTGCTTGTCCAGTCGAAC
ATCCCGCAGGATGCCCTTAAAATCGTTCAACTGTCGACCGTAGTTGATGC
GACCCTGGTTCTCTACGATAATCTGGAACCTCCGCCCGGCACTTGCACTG
AGTGGCAATTCGAACACGGGGGTTTCCCTGGCCAGAATACCCACGAACTC
ACCATCCACATAAACGTAACCTCGATCCGCCAGTCCGGGAACGCTAAGGA
TGCTCGGATCCCGCTGGAAGCTGGGCAACCAGGTCTCGTAGAGCACCAAA
CCAGAGTACTGTCCCAAAGCCTCGAAGCTCTTCGGCTTGGCGGACTGCAC
AAATCCAGTGGAGAGACGAGATCGAGCCTCCGACGAAAGCAGACTACAGC
AGGTGGTCAGACGCACAGTTCCGTAGGATCGCTTGGGTACGGGTCCGGGC
ACGGGTTGATTTGGCAGCGGGAGATAGCGGCCAATGATGCGTCGC

BO04837.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3132-PA 1914 Ect3-RA 1035..1911 895..19 4385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
Ect3-RA 2236 CG3132-RA 1198..2074 895..19 4385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12002478..12003354 895..19 4385 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:55:34 has no hits.

BO04837.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:07 Download gff for BO04837.3prime
Subject Subject Range Query Range Percent Splice Strand
Ect3-PA 1035..1914 18..895 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:27:58 Download gff for BO04837.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3132-PA 1035..1914 18..895 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:43:19 Download gff for BO04837.3prime
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 1198..2074 19..895 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:49 Download gff for BO04837.3prime
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 1198..2074 19..895 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:49 Download gff for BO04837.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12002478..12003354 19..895 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:43:19 Download gff for BO04837.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7828200..7829076 19..895 100   Minus

BO04837.5prime Sequence

827 bp (826 high quality bases) assembled on 2005-12-02

> BO04837.5prime
GAAGTTATCAGTCGACATGAAGTTCAGTGTGGTGGTCCTGGTGGCCCTAC
TACCGCTGCTAGGAGCTGTTTCAGCGAATCGCACTTTTGTGGTGGACTAC
GAAAAGGATCAGTTCCTAAAGGATGGAGAACCATTCCGATTCATTGCCGG
CTCCTTCCACTACTTCCGTGCTCATCCAGCCACCTGGCAAAGGCATCTTA
GGACCATGAGAGCTGCGGGTCTGAATGCGGTGACAACCTATGTGGAGTGG
TCATTGCACAATCCGCGGGATGGCGTTTATGTGTGGAGCGGCATTGCCGA
TCTGGAACACTTTATACGCCTGGCCGTGGGCGAGGATCTGCTGGTCATCC
TCCGTCCGGGTCCGTATATTTGTGCGGAGCGTGACATGGGCGGCTTTCCC
TACTGGCTGCTGAATAAGTATCCGGGCATTCAGCTCCGGACAGCAGATGT
CAATTATCTTAGCGAAATTCGCATTTGGTATACCCAACTGTTTGCCAAAA
TGAATAAATATCTGTATGGCAATGGTGGGCCAATTATAATGGTTCAGGTG
GAGAACGAATATGGCTCCTTCTATGCCTGCGATCTCAACTATCGGAATTG
GCTACGCGATGAGACCGAGAGTCATGTCAAAGGTCAGGCGGTGCTCTTCA
CCAACGATGGACCCAGTGTGCTGCGCTGTGGAAAAATCCAGGGCGTCCTA
GCGACCATGGACTTTGGAGCAACGAACGATCTCAAGCCCATTTGGGCCAA
GTTTAGAAGGTACCAGCCAAAGGGTCCGCTGGTCAATGCGGAATACTATC
CCGGTTGGCTAACTCACTGGACGGAGC

BO04837.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3132-PA 1914 Ect3-RA 1..811 17..827 4055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Ect3-RA 2236 CG3132-RA 164..974 17..827 4055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12001776..12002150 453..827 1875 100 Plus
3R 32079331 3R 12001210..12001430 17..237 1105 100 Plus
3R 32079331 3R 12001482..12001701 233..452 1085 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 06:28:34 has no hits.

BO04837.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:08 Download gff for BO04837.5prime
Subject Subject Range Query Range Percent Splice Strand
Ect3-PA 1..811 17..827 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:00 Download gff for BO04837.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3132-PA 1..811 17..827 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:24 Download gff for BO04837.5prime
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 154..974 7..827 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:15:18 Download gff for BO04837.5prime
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 154..974 7..827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:15:18 Download gff for BO04837.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12001487..12001701 238..452 100 -> Plus
3R 12001208..12001430 14..237 99 -> Plus
3R 12001776..12002150 453..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:24 Download gff for BO04837.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7826930..7827152 14..237 99 -> Plus
arm_3R 7827209..7827423 238..452 100 -> Plus
arm_3R 7827498..7827872 453..827 100   Plus

BO04837.complete Sequence

1945 bp (1945 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ629887

> BO04837.complete
GAAGTTATCAGTCGACATGAAGTTCAGTGTGGTGGTCCTGGTGGCCCTAC
TACCGCTGCTAGGAGCTGTTTCAGCGAATCGCACTTTTGTGGTGGACTAC
GAAAAGGATCAGTTCCTAAAGGATGGAGAACCATTCCGATTCATTGCCGG
CTCCTTCCACTACTTCCGTGCTCATCCAGCCACCTGGCAAAGGCATCTTA
GGACCATGAGAGCTGCGGGTCTGAATGCGGTGACAACCTATGTGGAGTGG
TCATTGCACAATCCGCGGGATGGCGTTTATGTGTGGAGCGGCATTGCCGA
TCTGGAACACTTTATACGCCTGGCCGTGGGCGAGGATCTGCTGGTCATCC
TCCGTCCGGGTCCGTATATTTGTGCGGAGCGTGACATGGGCGGCTTTCCC
TACTGGCTGCTGAATAAGTATCCGGGCATTCAGCTCCGGACAGCAGATGT
CAATTATCTTAGCGAAATTCGCATTTGGTATACCCAACTGTTTGCCAAAA
TGAATAAATATCTGTATGGCAATGGTGGGCCAATTATAATGGTTCAGGTG
GAGAACGAATATGGCTCCTTCTATGCCTGCGATCTCAACTATCGGAATTG
GCTACGCGATGAGACCGAGAGTCATGTCAAAGGTCAGGCGGTGCTCTTCA
CCAACGATGGACCCAGTGTGCTGCGCTGTGGAAAAATCCAGGGCGTCCTA
GCGACCATGGACTTTGGAGCAACGAACGATCTCAAGCCCATTTGGGCCAA
GTTTAGAAGGTACCAGCCAAAGGGTCCGCTGGTCAATGCGGAATACTATC
CCGGTTGGCTAACTCACTGGACGGAGCCGATGGCCAATGTTAGCACCCAA
TCGATTACTTCCACTTTTATAAACATGCTGGATCATGGTGCCAGTGTGAA
CTTCTACATGTTCTACGGCGGCACCAACTTCGGATTCACAGCTGGTGCCA
ATGACATTGGACCCGGAAACTACATGGCTGACATTACCAGCTACGACTAC
GATGCACCCATGACGGAGGCGGGGGATCCCACTCCCAAATACCAGGCCCT
GCGACGCATCATTGGCCGCTATCTCCCGCTGCCAAATCAACCCGTGCCCG
GACCCGTACCCAAGCGATCCTACGGAACTGTGCGTCTGACCACCTGCTGT
AGTCTGCTTTCGTCGGAGGCTCGATCTCGTCTCTCCACTGGATTTGTGCA
GTCCGCCAAGCCGAAGAGCTTCGAGGCTTTGGGACAGTACTCTGGTTTGG
TGCTCTACGAGACCTGGTTGCCCAGCTTCCAGCGGGATCCGAGCATCCTT
AGCGTTCCCGGACTGGCGGATCGAGGTTACGTTTATGTGGATGGTGAGTT
CGTGGGTATTCTGGCCAGGGAAACCCCCGTGTTCGAATTGCCACTCAGTG
CAAGTGCCGGGCGGAGGTTCCAGATTATCGTAGAGAACCAGGGTCGCATC
AACTACGGTCGACAGTTGAACGATTTTAAGGGCATCCTGCGGGATGTTCG
ACTGGACAAGCAGGTGCTGAGCAACTGGAACATGACCCAATTCCCACTCG
AATCGTACGACAACCTGGAGCAGCTGATTACCCAGTCGGATGAGGCAGTT
CGTCAGGGCTTCCAGGAGCTAAAGAAGTTGCGCACAATGCTGCGCACTGG
TCCCGCCATTTACCACGGTCAACTGGACATCCAAAAGGAATCTGATCTGG
CGGACACCTATCTGGACATGTCCGGCTGGGGCAAGGGCATTGTCTTTGTG
AATGGCGAAAATCTCGGCAGGTATTGGCCCCTGGTGGGACCTCAAGTCAC
CCTGTATGTTCCGGCCGCCGTGCTCAAGGCGGGCTCAAATCGACTGGTGG
TGGTGGAGTATCAGCAGACACCCGCCTCACAGGAGCTGCACTTCCGAGAT
ACCCCCATTCTGAACGCGAGGACCGTTGCAAGCTTTCTAGACCAT

BO04837.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
Ect3-RA 1914 CG3132-PA 1..1911 17..1927 9555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
Ect3-RA 2236 CG3132-RA 164..2074 17..1927 9555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12002298..12003354 871..1927 5285 100 Plus
3R 32079331 3R 12001776..12002193 453..870 2090 100 Plus
3R 32079331 3R 12001210..12001430 17..237 1105 100 Plus
3R 32079331 3R 12001482..12001701 233..452 1085 99.5 Plus
Blast to na_te.dros performed on 2014-11-28 00:47:36 has no hits.

BO04837.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:13 Download gff for BO04837.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 1..1914 17..1928 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:17 Download gff for BO04837.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 125..2045 7..1927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:39 Download gff for BO04837.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 164..2074 17..1929 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:13 Download gff for BO04837.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 125..2045 7..1927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:36 Download gff for BO04837.complete
Subject Subject Range Query Range Percent Splice Strand
Ect3-RA 164..2074 17..1929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:36 Download gff for BO04837.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12001210..12001430 17..237 100 -> Plus
3R 12001487..12001701 238..452 100 -> Plus
3R 12001776..12002193 453..870 100 -> Plus
3R 12002298..12003354 871..1929 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:39 Download gff for BO04837.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7826932..7827152 17..237 100 -> Plus
arm_3R 7827209..7827423 238..452 100 -> Plus
arm_3R 7827498..7827915 453..870 100 -> Plus
arm_3R 7828020..7829076 871..1929 99   Plus

BO04837.pep Sequence

Translation from 16 to 1945

> BO04837.pep
MKFSVVVLVALLPLLGAVSANRTFVVDYEKDQFLKDGEPFRFIAGSFHYF
RAHPATWQRHLRTMRAAGLNAVTTYVEWSLHNPRDGVYVWSGIADLEHFI
RLAVGEDLLVILRPGPYICAERDMGGFPYWLLNKYPGIQLRTADVNYLSE
IRIWYTQLFAKMNKYLYGNGGPIIMVQVENEYGSFYACDLNYRNWLRDET
ESHVKGQAVLFTNDGPSVLRCGKIQGVLATMDFGATNDLKPIWAKFRRYQ
PKGPLVNAEYYPGWLTHWTEPMANVSTQSITSTFINMLDHGASVNFYMFY
GGTNFGFTAGANDIGPGNYMADITSYDYDAPMTEAGDPTPKYQALRRIIG
RYLPLPNQPVPGPVPKRSYGTVRLTTCCSLLSSEARSRLSTGFVQSAKPK
SFEALGQYSGLVLYETWLPSFQRDPSILSVPGLADRGYVYVDGEFVGILA
RETPVFELPLSASAGRRFQIIVENQGRINYGRQLNDFKGILRDVRLDKQV
LSNWNMTQFPLESYDNLEQLITQSDEAVRQGFQELKKLRTMLRTGPAIYH
GQLDIQKESDLADTYLDMSGWGKGIVFVNGENLGRYWPLVGPQVTLYVPA
AVLKAGSNRLVVVEYQQTPASQELHFRDTPILNARTVASFLDH

BO04837.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ect3-PA 637 CG3132-PA 1..637 1..637 3388 100 Plus
Gal-PA 672 CG9092-PA 23..660 1..638 1626 51.1 Plus
Gal-PB 670 CG9092-PB 44..658 24..638 1624 52.2 Plus