Clone Sequence Records
BO04841.3prime Sequence
698 bp (575 high quality bases) assembled on 2005-12-02
> BO04841.3prime
ATGGTCTAGAAAGCTTGCCAGGTGGGCACTGCTGTTGGGCTTCGTCAATG
GGGGGCCAACTCCGCCGGCCAGTTTCTGGACCAGCAGACCCACTTCGTAG
GCAAGATTATCGGTGTCCTCTTTGGTGGCTGCTTCGGCATAGACGCGCAC
CACATCCTCGGTGCCCGAGGGGCGAACGAAGGAGCGTCCCCGCTTGTATT
TCGCCACCACCTGGTTGATTTCCGTCTGCAGACCTTCGGGCTTTACGCAC
ACGCGTTCCGCATCCGTCGTCTCGATGACATTGCGATCCTGCACCTTCAC
CTTTAGCTGTCGGTTGGGCAGATCGTTGTACGACGAGATCCAATCCTGGA
CATCCCAGCCCTTGTGATTTAGGATTGTTTCCACCAGCAGCATGTCGGAT
ATGGCATCGCCCACGGTCTCGTTGATAAGATCGATGAGCAGCAGCAACGT
CTTGGCACTCTCCTTAGTTTGGGCCACCTGGGCAATCGTCGCCTTAGCAT
TGTCACTGAACACAATCGTTCCGTGGCCATTCGCCTCGAAGTAAACACCA
ATGTCGTACTCCAAGGCCTTGTGGTGCAGGTGCTTCACGCCCGTGGGTAC
GCACGAAACGGGAAACTTCAGCTGGTCCACTATGTAGTCCGTGGATGCAC
CATTGGCGTANGCAGTTTGCACCAGGCCCAGCCGTAGGCTAATCTCGG
BO04841.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10627-PA | 1650 | CG10627-RA | 968..1647 | 698..19 | 3381 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nst-RA | 2202 | CG10627-RA | 1104..1783 | 698..19 | 3389 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12527801..12528382 | 117..698 | 2899 | 99.8 | Plus |
| 3L | 28110227 | 3L | 12527634..12527734 | 19..119 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:10:37 has no hits.
BO04841.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:11 Download gff for
BO04841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10627-PA | 968..1650 | 18..698 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:04 Download gff for
BO04841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10627-PA | 968..1650 | 18..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:45 Download gff for
BO04841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nst-RA | 1104..1789 | 13..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:10:05 Download gff for
BO04841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nst-RA | 1104..1789 | 13..698 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:10:05 Download gff for
BO04841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12527628..12527732 | 13..117 | 97 | <- | Plus |
| 3L | 12527802..12528382 | 118..698 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:45 Download gff for
BO04841.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12520728..12520832 | 13..117 | 97 | <- | Plus |
| arm_3L | 12520902..12521482 | 118..698 | 99 | | Plus |
BO04841.5prime Sequence
929 bp (801 high quality bases) assembled on 2005-12-02
> BO04841.5prime
GAAGTTATCAGTCGACATGTCTATTAACCTGCGCACCGTCTACGCCTTCG
CCCGCGAGATGTACCCAAAGACCTCCAAGGAGACCATCCAATATGGAACA
GCTGGCTTTCGCGGCAAGGCTGAGTTCCTGGACAGCGTGATGTTCCGCAT
GGGCGTTCTGGCCACCCTGCGTTCCCGGTATCGCGGAGGCTCCGTCATCG
GTGTGATGATCACGGCATCGCACAATCCGGAGCCGGACAACGGAGTGAAG
CTGGTCGATCCCAAGGGCGAGATGCTGGAGGCCAGCTGGGAGGCGATAGC
CACCGATCTGGTCAACGTCAGCGACCAGGAGCTGGAGCAGCAGGTGGCCA
AGATCATAAAGGACAACAATATCGATGTGACGACCAGTTCCCAGGTGTTT
GTGGGCATGGACAACAGATACCACAGTCCGCGGCTGCTGAAAGCGGTGGC
CGATGGCGTGATAGCGCTAAAGGGTAACGTCAAGGAGTACGGCATTGTGA
CCACACCCATGCTGCACTACTTCGTGGTGGCGGCGAATACCAAGGAGGCA
TACGGCAAGCCCACCGAGGAGGGTTACTACGACAAGCTGATCAAGGCATT
CGAACTGCTGCGCAACGGGCGCCTGGAGAACGGCAACTATCGCAATAGCA
TCATCTACGATGGTGCCAACGGTGTGGGTGCGCGCAAGATGCTGCAGTTC
ATCAAGCGCATGAAGGGCACCCTCAACGTGACGGTCATTAATCAGGGCAT
CGGTGTCGGCAAGATCAACGAGGACTGCGGCGCCGACTACGTGAAGGTGC
AGCAAAGTCCGCCGAAATCCATGCCCGAGGATGTGAAGCCGTACACGAGA
TGCGTCAGCGTGGATGGCGATGCCGATCGGGTGGTGTACTTCTTTACCGA
CGACAAGGGGTGAGTTCCATCTGCTCGAT
BO04841.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10627-PA | 1650 | CG10627-RA | 1..893 | 17..909 | 4465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nst-RA | 2202 | CG10627-RA | 137..1048 | 17..929 | 4540 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12528438..12529248 | 929..118 | 4010 | 99.9 | Minus |
| 3L | 28110227 | 3L | 12529934..12530035 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:28:59 has no hits.
BO04841.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:12 Download gff for
BO04841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10627-PA | 1..912 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:06 Download gff for
BO04841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10627-PA | 1..912 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:28 Download gff for
BO04841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nst-RA | 128..1048 | 6..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:16:58 Download gff for
BO04841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nst-RA | 128..1048 | 6..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:16:58 Download gff for
BO04841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12528438..12529248 | 118..929 | 99 | <- | Minus |
| 3L | 12529935..12530044 | 6..117 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:28 Download gff for
BO04841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12521538..12522348 | 118..929 | 99 | <- | Minus |
| arm_3L | 12523035..12523144 | 6..117 | 96 | | Minus |
BO04841.complete Sequence
1681 bp (1681 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629888
> BO04841.complete
GAAGTTATCAGTCGACATGTCTATTAACCTGCGCACCGTCTACGCCTTCG
CCCGCGAGATGTACCCAAAGACCTCCAAGGAGACCATCCAATATGGAACA
GCTGGCTTTCGCGGCAAGGCTGAGTTCCTGGACAGCGTGATGTTCCGCAT
GGGCGTTCTGGCCACCCTGCGTTCCCGGTATCGCGGAGGCTCCGTCATCG
GTGTGATGATCACGGCATCGCACAATCCGGAGCCGGACAACGGAGTGAAG
CTGGTCGATCCCAAGGGCGAGATGCTGGAGGCCAGCTGGGAGGCGATAGC
CACCGATCTGGTCAACGTCAGCGACCAGGAGCTGGAGCAGCAGGTGGCCA
AGATCATAAAGGACAACAATATCGATGTGACGACCAGTTCCCAGGTGTTT
GTGGGCATGGACAACAGATACCACAGTCCGCGGCTGCTGAAAGCGGTGGC
CGATGGCGTGATAGCGCTAAAGGGTAACGTCAAGGAGTACGGCATTGTGA
CCACACCCATGCTGCACTACTTCGTGGTGGCGGCGAATACCAAGGAGGCA
TACGGCAAGCCCACCGAGGAGGGTTACTACGACAAGCTGATCAAGGCATT
CGAACTGCTGCGCAACGGGCGCCTGGAGAACGGCAACTATCGCAATAGCA
TCATCTACGATGGTGCCAACGGTGTGGGTGCGCGCAAGATGCTGCAGTTC
ATCAAGCGCATGAAGGGCACCCTCAACGTGACGGTCATTAATCAGGGCAT
CGGTGTCGGCAAGATCAACGAGGACTGCGGCGCCGACTACGTGAAGGTGC
AGCAAAGTCCGCCGAAATCCATGCCCGAGGATGTGAAGCCGTACACGAGA
TGCGTCAGCGTGGATGGCGATGCCGATCGGGTGGTGTACTTCTTTACCGA
CGACAAGGGTGAGTTCCATCTGCTCGATGGCGATCGCATAGCCACCCTAA
TCGCCGGCTATCTCATGGAACTGGTCACACAATCCGAGATTAGCCTACGG
CTGGGCCTGGTGCAAACTGCCTACGCCAATGGTGCATCCACGGACTACAT
AGTGGACCAGCTGAAGTTTCCCGTTTCGTGCGTACCCACGGGCGTGAAGC
ACCTGCACCACAAGGCCTTGGAGTACGACATTGGTGTTTACTTCGAGGCG
AATGGCCACGGAACGATTGTGTTCAGTGACAATGCTAAGGCGACGATTGC
CCAGGTGGCCCAAACTAAGGAGAGTGCCAAGACGTTGCTGCTGCTCATCG
ATCTTATCAACGAGACCGTGGGCGATGCCATATCCGACATGCTGCTGGTG
GAAACAATCCTAAATCACAAGGGCTGGGATGTCCAGGATTGGATCTCGTC
GTACAACGATCTGCCCAACCGACAGCTAAAGGTGAAGGTGCAGGATCGCA
ATGTCATCGAGACGACGGATGCGGAACGCGTGTGCGTAAAGCCCGAAGGT
CTGCAGACGGAAATCAACCAGGTGGTGGCGAAATACAAGCGGGGACGCTC
CTTCGTTCGCCCCTCGGGCACCGAGGATGTGGTGCGCGTCTATGCCGAAG
CAGCCACCAAAGAGGACACCGATAATCTTGCCTACGAAGTGGGTCTGCTG
GTCCAGAAACTGGCCGGCGGAGTTGGCCCCCCATTGACGAAGCCCAACAG
CAGTGCCCACCTGGCAAGCTTTCTAGACCAT
BO04841.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nst-RA | 1650 | CG10627-PA | 1..1647 | 17..1663 | 8235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nst-RA | 2202 | CG10627-RA | 137..1783 | 17..1663 | 8235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12527801..12529248 | 1565..118 | 7240 | 100 | Minus |
| 3L | 28110227 | 3L | 12529934..12530035 | 118..17 | 510 | 100 | Minus |
| 3L | 28110227 | 3L | 12527634..12527734 | 1663..1563 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:14:51 has no hits.
BO04841.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:01 Download gff for
BO04841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10627-RA | 1..1650 | 17..1664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:06 Download gff for
BO04841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10627-RA | 161..1822 | 6..1669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:19 Download gff for
BO04841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nst-RA | 137..1783 | 17..1665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:01 Download gff for
BO04841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10627-RA | 161..1822 | 6..1669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:00 Download gff for
BO04841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nst-RA | 137..1783 | 17..1665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:00 Download gff for
BO04841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12527632..12527732 | 1565..1665 | 98 | <- | Minus |
| 3L | 12527802..12529248 | 118..1564 | 100 | <- | Minus |
| 3L | 12529935..12530035 | 17..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:19 Download gff for
BO04841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12520732..12520832 | 1565..1665 | 98 | <- | Minus |
| arm_3L | 12520902..12522348 | 118..1564 | 100 | <- | Minus |
| arm_3L | 12523035..12523135 | 17..117 | 100 | | Minus |
BO04841.pep Sequence
Translation from 16 to 1681
> BO04841.pep
MSINLRTVYAFAREMYPKTSKETIQYGTAGFRGKAEFLDSVMFRMGVLAT
LRSRYRGGSVIGVMITASHNPEPDNGVKLVDPKGEMLEASWEAIATDLVN
VSDQELEQQVAKIIKDNNIDVTTSSQVFVGMDNRYHSPRLLKAVADGVIA
LKGNVKEYGIVTTPMLHYFVVAANTKEAYGKPTEEGYYDKLIKAFELLRN
GRLENGNYRNSIIYDGANGVGARKMLQFIKRMKGTLNVTVINQGIGVGKI
NEDCGADYVKVQQSPPKSMPEDVKPYTRCVSVDGDADRVVYFFTDDKGEF
HLLDGDRIATLIAGYLMELVTQSEISLRLGLVQTAYANGASTDYIVDQLK
FPVSCVPTGVKHLHHKALEYDIGVYFEANGHGTIVFSDNAKATIAQVAQT
KESAKTLLLLIDLINETVGDAISDMLLVETILNHKGWDVQDWISSYNDLP
NRQLKVKVQDRNVIETTDAERVCVKPEGLQTEINQVVAKYKRGRSFVRPS
GTEDVVRVYAEAATKEDTDNLAYEVGLLVQKLAGGVGPPLTKPNSSAHLA
SFLDH
BO04841.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nst-PA | 549 | CG10627-PA | 1..549 | 1..549 | 2815 | 100 | Plus |
