Clone BO04842 Report

Search the DGRC for BO04842

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG12084-RA
Protein status:BO04842.pep: Imported from assembly
Sequenced Size:2413

Clone Sequence Records

BO04842.3prime Sequence

964 bp (880 high quality bases) assembled on 2005-12-02

> BO04842.3prime
ATGGTCTAGAAAGCTTGCGCCGTCGACGACCATGCGTTCCGATCCGGAGT
CGCACTGCTCTATGACCAGGCGAGCGATGCGCTTGATCTCGCAGTAGGGA
CTCTCGTGCTCGATTAGCTCGTTGAGGATCTGGATGCCGTTCTCCTGCTC
CACCAGCTTGCAATATTTTTCGGGATAAACCTGTGTCAGATTGGCCAGGG
CCCAAACAGCCCAATGTTGGCACTGGGGCGTCTCGTAGCAGCGCACCAGG
CTGAGGATCGGCTCAAAGCTGCGGTAGTTGATGTTCCGCTCGCTCTTGAT
GTTCCACCGCTGAATGGCGGCCACCATGCGCTCCAGCACGTGCTCCCGGC
TGGGCGTCTTGATCGTCCAGGCATCCGCTCCGTCCGAGGCAATGTGCGCC
AGCACTCCAGCCGCATTGTAGCTGACCTGGAAGCGCAGGTAGGCATGGTT
AGCACTGGCCATCTCTCTCTCCCGCACTCTCGCCACCACACTCGCACTAG
CACCACCCACCTCGATGCCATCGCTCAGGGAGTCCAGCAGACGGGCAAAC
ACCTCAATGAACTCCTGGGTCATCAGCTTGGGCCGCAGCCACTTCACCTC
GGCCACATTGCCCAGCAGGCCCATCATGTTGCGCAACAGCTCGTCACGAT
CCGGGAAGGTATGTAAACACTTAAGGAAATACTCCATGCCACGTCCATCG
AGGAATCTCTTACAATTAATAGCAGTCTCATCGGTTACGTTCCACATGGT
GGACCAAGCCACCTCCATCACATCGTCGAANACGGAGCGAGTCAGCCGAT
CCTTTATCAACGTGAACATGGTACTAACTACGCCCAACTCGCCCAGGAAG
AGCTTCTGTCGCCCATCCACCTGGCAAGCGAGTGTGTTCAGCAGGTAGAT
TGCTATGCGCTGGACAAATCCCTCTTGCTCCCGTCTAGAAACGCCGTGCA
GCAGGATCTTGATG

BO04842.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12084-PA 2382 CG12084-RA 1467..2379 931..19 4546 99.8 Minus
CG12084-PA 2382 CG12084-RA 1434..1462 964..936 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12084-RA 3148 CG12084-RA 1816..2761 964..19 4674 99.7 Minus
CG12084-RB 3483 CG12084-RB 1816..2271 964..509 2224 99.3 Minus
CG12084-RB 3483 CG12084-RB 2268..2677 428..19 2050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1491982..1492467 179..664 2415 99.8 Plus
3L 28110227 3L 1491757..1491923 19..185 835 100 Plus
3L 28110227 3L 1492646..1492807 661..822 799 99.4 Plus
3L 28110227 3L 1492876..1493017 823..964 650 97.2 Plus
Blast to na_te.dros performed on 2015-02-13 13:35:01 has no hits.

BO04842.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:13 Download gff for BO04842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12084-PA 1434..2382 15..964 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:07 Download gff for BO04842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12084-PA 1434..2382 15..964 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:43:24 Download gff for BO04842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12084-RA 1816..2766 13..964 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:54:39 Download gff for BO04842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12084-RA 1816..2766 13..964 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:54:39 Download gff for BO04842.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1491752..1491918 13..180 98 <- Plus
3L 1491984..1492463 181..660 100 <- Plus
3L 1492646..1492807 661..822 99 <- Plus
3L 1492876..1493017 823..964 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:43:24 Download gff for BO04842.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1491752..1491918 13..180 98 <- Plus
arm_3L 1491984..1492463 181..660 100 <- Plus
arm_3L 1492646..1492807 661..822 99 <- Plus
arm_3L 1492876..1493017 823..964 98   Plus

BO04842.5prime Sequence

921 bp (759 high quality bases) assembled on 2005-12-02

> BO04842.5prime
GAAGTTATCAGTCGACATGAGCTGCAAGGTGCGGCTGATGGAGGACGGCT
CGCTGGACGAGGAGCCGCTGACCCTCAAGGAGATCGCCTACCAGAAGCTG
TGCAACAATCTGGACATCATTAGCAGCCACCGGCCAGATGGCCAGCGCGG
CCTCAATCCGGGCATTGTGCTGCCCAACGAGATCTGCGACGGCTTCCTCG
AGAACTATCAGCGATTCAATCGCCCGCTGGACGACAGCGTCATCCGCCTC
TTCGAGGACACACACCGCACTTCGCTCAAGATCGTCAATCTTCGCAACAG
CACCCTAAGCAGTATAGGCTTGGAGACTCTGATGCGGCACAAACTGTTCG
CTTTGTCCTTGTGGTACTGTGACATGATATCCGTTGGTTCCCACCACCTT
CTGGCCCACTACGGCGACAGTCTGCGATCCCTGGAATTGGGCATCAGTTC
CCATCTGCTGCAGTACGCGGAGCCCAACGAGAAGGAGCCAGTGGACTTCC
AGTTGACTTGTCCGCATCTGCGGCGGCTGGTGCTCAACGGTGTTGTGATG
CACCACCGCCTGCAGTTCGCTCACCTCCACGACTTGGGCCACCTGGACCT
GACCTCCTGCGTGCTGGCCAACTTCAGCCTTGAGGCATTGGGCTCGCTGC
CCAATCTGCACACGCTCATCCTGTTCAATGTGTGGCCCATCGCCAACCAG
CTGCATGCGATCTGCTGCCTGAGGCGTCTGTGCACACTGGACATATCCAT
CTCCAGTTCCGGAAATGGCCACGGCACCTACGACCTGCCCGATCAGACGC
TGGAGATGCTGATGGACAACTTGCGACATCTCACACATTTGGATATCTCT
GGCACGAATTTGGCCGGCAACGGTGTGGCCACCAAGGAGTCGACAACTAC
CAGTGGCATGCAGCAGAGCCC

BO04842.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12084-PA 2382 CG12084-RA 1..905 17..921 4525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12084-RB 3483 CG12084-RB 383..1287 17..921 4525 100 Plus
CG12084-RA 3148 CG12084-RA 383..1287 17..921 4525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1493665..1494270 921..316 3030 100 Minus
3L 28110227 3L 1494589..1494890 318..17 1510 100 Minus
Blast to na_te.dros performed 2015-02-11 23:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 4395..4477 508..426 116 65.9 Minus

BO04842.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:14 Download gff for BO04842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12084-PA 1..905 17..921 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:08 Download gff for BO04842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12084-PA 1..905 17..921 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:35 Download gff for BO04842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12084-RA 383..1287 17..921 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:39 Download gff for BO04842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12084-RA 383..1287 17..921 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:39 Download gff for BO04842.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1493665..1494268 318..921 100 <- Minus
3L 1494590..1494890 17..317 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:35 Download gff for BO04842.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1493665..1494268 318..921 100 <- Minus
arm_3L 1494590..1494890 17..317 100   Minus

BO04842.complete Sequence

2413 bp assembled on 2008-08-14

GenBank Submission: FJ629889

> BO04842.complete
GAAGTTATCAGTCGACATGAGCTGCAAGGTGCGGCTGATGGAGGACGGCT
CGCTGGACGAGGAGCCGCTGACCCTCAAGGAGATCGCCTACCAGAAGCTG
TGCAACAATCTGGACATCATTAGCAGCCACCGGCCAGATGGCCAGCGCGG
CCTCAATCCGGGCATTGTGCTGCCCAACGAGATCTGCGACGGCTTCCTCG
AGAACTATCAGCGATTCAATCGCCCGCTGGACGACAGCGTCATCCGCCTC
TTCGAGGACACACACCGCACTTCGCTCAAGATCGTCAATCTTCGCAACAG
CACCCTAAGCAGTATAGGCTTGGAGACTCTGATGCGGCACAAACTGTTCG
CTTTGTCCTTGTGGTACTGTGACATGATATCCGTTGGTTCCCACCACCTT
CTGGCCCACTACGGCGACAGTCTGCGATCCCTGGAATTGGGCATCAGTTC
CCATCTGCTGCAGTACGCGGAGCCCAACGAGAAGGAGCCAGTGGACTTCC
AGTTGACTTGTCCGCATCTGCGGCGGCTGGTGCTCAACGGTGTTGTGATG
CACCACCGCCTGCAGTTCGCTCACCTCCACGACTTGGGCCACCTGGACCT
GACCTCCTGCGTGCTGGCCAACTTCAGCCTTGAGGCATTGGGCTCGCTGC
CCAATCTGCACACGCTCATCCTGTTCAATGTGTGGCCCATCGCCAACCAG
CTGCATGCGATCTGCTGCCTGAGGCGTCTGTGCACACTGGACATATCCAT
CTCCAGTTCCGGAAATGGCCACGGCACCTACGACCTGCCCGATCAGACGC
TGGAGATGCTGATGGACAACTTGCGACATCTCACACATTTGGATATCTCT
GGCACGAATTTGGCCGGCAACGGTGTGGCCACCAAGGAGTCGACAACTAC
CAGTGGCATGCAGCAGAGCCCCAAAATGGAGCAACACTTTGCCCTCACAG
ACATCCCGGGGCTAGCGTCCCGCACCCAGCGACCGCTGCAGTTCCTAGGC
CTCTATCACACGGCCCACTGGGCCTGCAAAAGACACGATATTCCAGCTTT
GGAGGTAGCTGGCGATGCCAACGAGCAGCAAATCCTTACTGCGGCGCGTT
ATTACCACGACAGACCAGTGCTTCTGACAAGAGTTCTCAACGACTTGTAC
CATCTCTTCCGCTTCGAGAACTGCAAGGACATACACACAGCACTGGATGT
TGTGCTCTCCGCCATGGATCGGCATCTCAAGTTCAAGCACATGCAAATCT
CCGGCAGTGCCACGCTGTTCTACATTGTCAAGGGCAGGGATCGATCCAAG
TTTGGAGCACTACTGCGCAATCACATCATTCGCACGCTGCTCAATGGCAT
GGAGATGCACATCACCGACGACACCATGCTGCGGAATGGTTACCTCACGC
TCACCCAGTTTCACATGCCAGTCGATGTGCTCTTCGAGTACGAGCGTCTC
ATCAAGATCCTGCTGCACGGCGTTTCTAAGACGGAGCAAGAGGGATTTGT
CCAGCGCATAGCAATCTACCTGCTGAACACACTCGCTTGCCAGGTGGATG
GGCGACAGAAGCTCTTCCTGGGCGAGTTGGGCGTAGTTAGTACCATGTTC
ACGTTGATAAAGGATCGGCTGACTCGCTCCGTTTTCGACGATGTGATGGA
GGTGGCTTGGTCCACCATGTGGAACGTAACCGATGAGACTGCTATTAATT
GTAAGAGATTCCTCGATGGACGTGGCATGGAGTATTTCCTTAAGTGTTTA
CATACCTTCCCGGATCGTGACGAGCTGTTGCGCAACATGATGGGCCTGCT
GGGCAATGTGGCCGAGGTGAAGTGGCTGCGGCCCAAGCTGATGACCCAGG
AGTTCATTGAGGTGTTTGCCCGTCTGCTGGACTCCCTGAGCGATGGCATC
GAGGTGGGTGGTGCTAGTGCGAGTGTGGTGGCGAGAGTGCGGGAGAGAGA
GATGGCCAGTGCTAACCATGCCTACCTGCGCTTCCAGGTCAGCTACAATG
CGGCTGGAGTGCTGGCGCACATTGCCTCGGACGGAGCGGATGCCTGGACG
ATCAAGACGCCCAGCCGGGAGCACGTGCTGGAGCGCATGGTGGCCGCCAT
TCAGCGGTGGAACATCAAGAGCGAGCGGAACATCAACTACCGCAGCTTTG
AGCCGATCCTCAGCCTGGTGCGCTGCTACGAGACGCCCCAGTGCCAACAT
TGGGCTGTTTGGGCCCTGGCCAATCTGACACAGGTTTATCCCGAAAAATA
TTGCAAGCTGGTGGAGCAGGAGAACGGCATCCAGATCCTCAACGAGCTAA
TCGAGCACGAGAGTCCCTACTGCGAGATCAAGCGCATCGCTCGCCTGGTC
ATAGAGCAGTGCGACTCCGGATCGGAACGCATGGTCGTCGACGGCGCAAG
CTTTCTAGACCAT

BO04842.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12084-RA 2382 CG12084-PA 1..2379 17..2395 11895 100 Plus
CG12084-RB 2298 CG12084-PB 1..1889 17..1905 9445 100 Plus
CG12084-RB 2298 CG12084-PB 1886..2295 1986..2395 2050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12084-RA 3148 CG12084-RA 383..2761 17..2395 11895 100 Plus
CG12084-RB 3483 CG12084-RB 383..2271 17..1905 9445 100 Plus
CG12084-RB 3483 CG12084-RB 2268..2677 1986..2395 2050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1493329..1494270 1257..316 4710 100 Minus
3L 28110227 3L 1491982..1492467 2235..1750 2415 99.8 Minus
3L 28110227 3L 1494589..1494890 318..17 1510 100 Minus
3L 28110227 3L 1493094..1493267 1429..1256 870 100 Minus
3L 28110227 3L 1491757..1491923 2395..2229 835 100 Minus
3L 28110227 3L 1492876..1493038 1591..1429 815 100 Minus
3L 28110227 3L 1492646..1492807 1753..1592 810 100 Minus
Blast to na_te.dros performed 2014-11-27 07:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 4395..4477 508..426 116 65.9 Minus

BO04842.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:59 Download gff for BO04842.complete
Subject Subject Range Query Range Percent Splice Strand
CG12084-RA 407..2790 17..2401 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:31 Download gff for BO04842.complete
Subject Subject Range Query Range Percent Splice Strand
CG12084-RA 383..2761 17..2397 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:59 Download gff for BO04842.complete
Subject Subject Range Query Range Percent Splice Strand
CG12084-RA 407..2785 17..2397 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:56 Download gff for BO04842.complete
Subject Subject Range Query Range Percent Splice Strand
CG12084-RA 383..2761 17..2397 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:56 Download gff for BO04842.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1493094..1493265 1258..1429 100 <- Minus
3L 1492876..1493037 1430..1591 100 <- Minus
3L 1491755..1491918 2234..2397 98 <- Minus
3L 1491984..1492463 1754..2233 100 <- Minus
3L 1492646..1492807 1592..1753 100 <- Minus
3L 1493329..1494268 318..1257 100 <- Minus
3L 1494590..1494890 17..317 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:31 Download gff for BO04842.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1492876..1493037 1430..1591 100 <- Minus
arm_3L 1491755..1491918 2234..2397 98 <- Minus
arm_3L 1491984..1492463 1754..2233 100 <- Minus
arm_3L 1492646..1492807 1592..1753 100 <- Minus
arm_3L 1493094..1493265 1258..1429 100 <- Minus
arm_3L 1493329..1494268 318..1257 100 <- Minus
arm_3L 1494590..1494890 17..317 100   Minus

BO04842.pep Sequence

Translation from 16 to 2413

> BO04842.pep
MSCKVRLMEDGSLDEEPLTLKEIAYQKLCNNLDIISSHRPDGQRGLNPGI
VLPNEICDGFLENYQRFNRPLDDSVIRLFEDTHRTSLKIVNLRNSTLSSI
GLETLMRHKLFALSLWYCDMISVGSHHLLAHYGDSLRSLELGISSHLLQY
AEPNEKEPVDFQLTCPHLRRLVLNGVVMHHRLQFAHLHDLGHLDLTSCVL
ANFSLEALGSLPNLHTLILFNVWPIANQLHAICCLRRLCTLDISISSSGN
GHGTYDLPDQTLEMLMDNLRHLTHLDISGTNLAGNGVATKESTTTSGMQQ
SPKMEQHFALTDIPGLASRTQRPLQFLGLYHTAHWACKRHDIPALEVAGD
ANEQQILTAARYYHDRPVLLTRVLNDLYHLFRFENCKDIHTALDVVLSAM
DRHLKFKHMQISGSATLFYIVKGRDRSKFGALLRNHIIRTLLNGMEMHIT
DDTMLRNGYLTLTQFHMPVDVLFEYERLIKILLHGVSKTEQEGFVQRIAI
YLLNTLACQVDGRQKLFLGELGVVSTMFTLIKDRLTRSVFDDVMEVAWST
MWNVTDETAINCKRFLDGRGMEYFLKCLHTFPDRDELLRNMMGLLGNVAE
VKWLRPKLMTQEFIEVFARLLDSLSDGIEVGGASASVVARVREREMASAN
HAYLRFQVSYNAAGVLAHIASDGADAWTIKTPSREHVLERMVAAIQRWNI
KSERNINYRSFEPILSLVRCYETPQCQHWAVWALANLTQVYPEKYCKLVE
QENGIQILNELIEHESPYCEIKRIARLVIEQCDSGSERMVVDGASFLDH

BO04842.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12084-PA 793 CG12084-PA 1..793 1..793 4156 100 Plus
CG12084-PB 765 CG12084-PB 1..765 1..793 3982 96.5 Plus