Clone BO04843 Report

Search the DGRC for BO04843

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG5645-RA
Protein status:BO04843.pep: Imported from assembly
Sequenced Size:2599

Clone Sequence Records

BO04843.3prime Sequence

880 bp (825 high quality bases) assembled on 2005-12-02

> BO04843.3prime
ATGGTCTAGAAAGCTTGCGTTATCCTTTTTTCCATATTTTTCCCGCTTGT
GGAATTTTCTGGGATTTATGCCATATGCCTTTAATCGATCGTCGGTTATT
CCACTATTGTTATTTTGCTTGTTTTTCGCCTTAAAGTTGTTCGTTTTCTT
AGCTGGGAAGGGTGCACTTGGCTTTTGGTTTGATTTCTTAAAGGGATTGG
TGCCGTTAGCGTTTCTCGGTCCCTTTTTGTTTCCACCTTGATTTTTATGA
ATTGGTGGCAGTTCCTGCCTTTGTTGGGATTTCGATTGTGGCTTATTGAA
AGGATTATTACCATTTGATTTTTCTGCTTTTGCAGGCGCACTTTCCGTAG
TTTTAAATGGTTGGTTCGACTTTGTCTTTGCACTTTTATTTGCTTGATTT
TGGGGTTTTTGGAATCCATTTTGCACGTTTTTAGGCTCTTTTTTGTTATT
TTTTAAGGCATTATTGTTTTTCGTTTTCTCCGTGCTTTGTGGACTGTTTT
TAGTTTCCTGATTTGCGTCATCTTTGCCCTTTTTAGAGGGAGTATCGACT
TTTTTCTTAGAACTTTCTGCCTGGACATCTTCAGTAGATCCATCCGCTTC
CTTTGGATCCTTGGAGTCACTTTCTTCTTTTAGAACCTTAGGAGCACTGG
CTGCTGCTGCGGCAGCCTTACGTTTCAGGCGTTTCCTCTTTGATTTGGAC
AAACCTTCTGTCGAGACTTGACCATTTTCGGCTGGAGCTGTCGCTTCAGC
TGGTGTCACTTCTGGTTTCTCTTCTGCTGGCTGCTCCTCATCGTCAGAAC
CTTCTCCATAAAGACTCTTAAATATCTTTCGCTTAAAGTCTTCATTCTTG
GCTTTCCTCTTTGAAAGACGCTGCTCCTTT

BO04843.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5645-PA 2568 CG5645-RA 1728..2565 856..19 4165 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5645-RA 2745 CG5645-RA 1776..2637 880..19 4235 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12133879..12134660 19..800 3910 100 Plus
3L 28110227 3L 12134725..12134805 800..880 330 93.8 Plus
Blast to na_te.dros performed on 2015-02-04 19:29:56 has no hits.

BO04843.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:15 Download gff for BO04843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-PA 1704..2568 15..880 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:09 Download gff for BO04843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-PA 1704..2568 15..880 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:52 Download gff for BO04843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 1776..2646 10..880 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:35:28 Download gff for BO04843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 1776..2646 10..880 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:35:28 Download gff for BO04843.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12134725..12134805 800..880 93   Plus
3L 12133870..12134659 10..799 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:52 Download gff for BO04843.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12126970..12127759 10..799 99 <- Plus
arm_3L 12127825..12127905 800..880 93   Plus

BO04843.5prime Sequence

868 bp (819 high quality bases) assembled on 2005-12-02

> BO04843.5prime
GAAGTTATCAGTCGACATGAATAATAATCTTTTTGAGGGCTCCGACGACG
ATGGGGAGGATCTGCAGCTGTCCACGAACAAGGACTATGCCAAGACCTAC
AACATCCTGCGCAAGAAAGAGCTACTACAGAAATATAAGGATCGTGGCTT
GGATGTTTCCGAATCGGAATTCGACAGTGACAGCTCGTCATCCGAGGAGG
ACGAGGTGGACCCCAAATTCGACCAGGACTTCTTCAAGACCCTGTCCTCG
CTGAAAAGTAAAGACCCATGTATCTACGACAAGGGTACGAAATTCTTCAG
TGAGTCCTCCGGCGATGAAGATGATAAGGATGGGGAGGCTCCGAAAAAGA
AGAAAAAAGCCAAGCCAGTCACTTTGAAGGACTACGAACGAAAGGTAATT
TTGGAGCATAATGGCAAGTTCGAGAGTTCAGATGAGGAGCAGCAGGAAAA
GGAGCACGAGGAACTCCAACGTGCGCAGTCACCGAGCGCCGTGGAGGAGG
AGCGCCGTCTAAAGGCCGAGTTCCGGAAGGTGATGAACAAGGAAGACGAC
AGTGAGGATGAGGAATTTGGAGGTATATTCAAGAAGCGCAGTAAGACCAA
GGAGCAAACAGCTGCCGAGGAGGCAGACTTTGCCAAATGGTTGGCGGGAA
AACAAGCTGAGATTCAAGAAACCGACAAGAAGCAGTTGGAGCCTCTAAAA
CAGTACTGGAGCAGCAACAAGCTGACCCAGGGCGAGAGTTTCCTCAGGGA
TTACATTCTCAACAAGGGCTATGCAAACACGGATGAGTCCGCCATTCCCA
CCTACGATGAGATCGTGGGCGAAGCTGCTCCGCTCTCCGAGGATGAGCAG
GAACTGGAGAAGCAGGCA

BO04843.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5645-PA 2568 CG5645-RA 1..852 17..868 4235 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5645-RA 2745 CG5645-RA 73..924 17..868 4245 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12135717..12136450 868..135 3655 99.9 Minus
3L 28110227 3L 12136512..12136634 139..17 600 99.2 Minus
Blast to na_te.dros performed on 2015-02-11 04:48:26 has no hits.

BO04843.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:16 Download gff for BO04843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-PA 1..851 17..867 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:11 Download gff for BO04843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-PA 1..851 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:48 Download gff for BO04843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 73..923 17..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:42 Download gff for BO04843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 73..923 17..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:42 Download gff for BO04843.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12135718..12136450 135..867 99 <- Minus
3L 12136517..12136635 16..134 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:48 Download gff for BO04843.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12128818..12129550 135..867 99 <- Minus
arm_3L 12129617..12129735 16..134 99 -> Minus

BO04843.complete Sequence

2599 bp assembled on 2008-08-14

GenBank Submission: FJ629890

> BO04843.complete
GAAGTTATCAGTCGACATGAATAATAATCTTTTTGAGGGCTCCGACGACG
ATGGGGAGGATCTGCAGCTGTCCACGAACAAGGACTATGCCAAGACCTAC
AACATCCTGCGCAAGAAAGAGCTACTACAGAAATATAAGGATCGTGGCTT
GGATGTTTCCGAATCGGAATTCGACAGTGACAGCTCGTCATCCGAGGAGG
ACGAGGTGGACCCCAAATTCGACCAGGACTTCTTCAAGACCCTGTCCTCG
CTGAAAAGTAAAGACCCATGTATCTACGACAAGGGTACGAAATTCTTCAG
TGAGTCCTCCGGCGATGAAGATGATAAGGATGGGGAGGCTCCGAAAAAGA
AGAAAAAAGCCAAGCCAGTCACTTTGAAGGACTACGAACGAAAGGTAATT
TTGGAGCATAATGGCAAGTTCGAGAGTTCAGATGAGGAGCAGCAGGAAAA
GGAGCACGAGGAACTCCAACGTGCGCAGTCACCGAGCGCCGTGGAGGAGG
AGCGCCGTCTAAAGGCCGAGTTCCGGAAGGTGATGAACAAGGAAGACGAC
AGTGAGGATGAGGAATTTGGAGGTATATTCAAGAAGCGCAGTAAGACCAA
GGAGCAAACAGCTGCCGAGGAGGCAGACTTTGCCAAATGGTTGGCGGGAA
AACAAGCTGAGATTCAAGAAACCGACAAGAAGCAGTTGGAGCCTCTAAAA
CAGTACTGGAGCAGCAACAAGCTGACCCAGGGCGAGAGTTTCCTCAGGGA
TTACATTCTCAACAAGGGCTATGCAAACACGGATGAGTCCGCCATTCCCA
CCTACGATGAGATCGTGGGCGAAGCTGCTCCGCTCTCCGAGGATGAGCAG
GAACTTGAGAAGCAGGCAGAGTTTGAGCACAAGTACAATTTCCGCTTTGA
GGAGCCAGATGCGGACTTCATAAAGCGCTATCCCCGCACCATCGAACAAT
CCCTGCGTCGCACGGATGACAAGAGGAAAGAAAAACGCAAGGAGCTGAAG
GAGCGCAAGGATCAGGAGAAACAGCAAAAGATGAAGGAGTTGGAACTGGT
CAAGGAAATGAAGCGTAAGGAGATCGATGAAAAGATACGCAAATTAAAAG
CGGTCACTGGCAACGATGAGCTTGGTTTCCGGGACGAAGAACTCGAGGAG
GACTTTGACCCGGCGGCCCACGATCGTCGAATGCAGGAGCTCTTCGACGA
TGAGTACTACAATGTCGATGAAGGCGAGGAGAAACCAGAATGTCCCTCGG
ATATCGATGAATTGGTGCTGGAAGATTGGGATAACTACGATCCTAGACAG
CACGCCAATGGGGGCGGTGAGGATTATGAAGGACACTGCGAGGACGACGA
CTTCAACATGGATTGCGACTACGATCCGTCCACGGCCAAGGAGCAACTTC
AACAAGAGCTCATCGAAAACACTCGTGGTCGCAAAGGACGAAAGGGTAGA
CGAAATCGCTTTATGGAAATGATCCAGGCGGAAAAGCCTGCATTCAATCC
TGAGGACGAAAAGACGTACAGTGAGTACATCGATGAGTACTACCAAATGG
ATTGCGAGGACATCATCGGGGATCAACCGTGTCGATTTAAATATGTGGAA
ACCACACCAAACGATTTCGGTTTGACGATAGAAGAGATCTTGCTGGCCAA
GAACAAGGAGCTTAACCAGTGGGCTAGCTTAAAGAAAGCTGTCCAAAACA
GACCGGAACACGTAGAGAAAAAGGAGCAGCGTCTCTACAAGATGAAAGCC
AAGAATGAAGACCTTAAGCGAAAGATATTTAAGAGTCTTTATGGAGAAGG
TTCTGACGATGAGGAGCAGCCAGCAGAAGAGAAACCAGAAGTGACACCAG
CTGAAGCGACAGCTCCAGCCGAAAATGGTCAAGTCTCGACAGAAGGTTTG
TCCAAATCAAAGAGGAAACGCCTGAAACGTAAGGCTGCCGCAGCAGCAGC
CAGTGCTCCTAAGGTTCTAAAAGAAGAAAGTGACTCCAAGGATCCAAAGG
AAGCGGATGGATCTACTGAAGATGTCCAGGCAGAAAGTTCTAAGAAAAAA
GTCGATACTCCCTCTAAAAAGGGCAAAGATGACGCAAATCAGGAAACTAA
AAACAGTCCACAAAGCACGGAGAAAACGAAAAACAATAATGCCTTAAAAA
ATAACAAAAAAGAGCCTAAAAACGTGCAAAATGGATTCCAAAAACCCCAA
AATCAAGCAAATAAAAGTGCAAAGACAAAGTCGAACCAACCATTTAAAAC
TACGGAAAGTGCGCCTGCAAAAGCAGAAAAATCAAATGGTAATAATCCTT
TCAATAAGCCACAATCGAAATCCCAACAAAGGCAGGAACTGCCACCAATT
CATAAAAATCAAGGTGGAAACAAAAAGGGACCGAGAAACGCTAACGGCAC
CAATCCCTTTAAGAAATCAAACCAAAAGCCAAGTGCACCCTTCCCAGCTA
AGAAAACGAACAACTTTAAGGCGAAAAACAAGCAAAATAACAATAGTGGA
ATAACCGACGATCGATTAAAGGCATATGGCATAAATCCCAGAAAATTCCA
CAAGCGGGAAAAATATGGAAAAAAGGATAACGCAAGCTTTCTAGACCAT

BO04843.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5645-RA 2568 CG5645-PA 1..2565 17..2581 12825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5645-RA 2745 CG5645-RA 73..2637 17..2581 12825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12134949..12136450 1636..135 7510 100 Minus
3L 28110227 3L 12133879..12134660 2581..1800 3910 100 Minus
3L 28110227 3L 12134725..12134894 1800..1631 835 99.4 Minus
3L 28110227 3L 12136512..12136634 139..17 600 99.2 Minus
Blast to na_te.dros performed on 2014-11-27 13:54:01 has no hits.

BO04843.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:44 Download gff for BO04843.complete
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 70..2643 17..2590 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:04 Download gff for BO04843.complete
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 73..2637 17..2583 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:07 Download gff for BO04843.complete
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 70..2634 17..2583 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:34 Download gff for BO04843.complete
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 73..2637 17..2583 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:34 Download gff for BO04843.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12133877..12134659 1801..2583 99 <- Minus
3L 12134725..12134888 1637..1800 100 <- Minus
3L 12134949..12136450 135..1636 100 <- Minus
3L 12136517..12136634 17..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:04 Download gff for BO04843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12126977..12127759 1801..2583 99 <- Minus
arm_3L 12127825..12127988 1637..1800 100 <- Minus
arm_3L 12128049..12129550 135..1636 100 <- Minus
arm_3L 12129617..12129734 17..134 100   Minus

BO04843.pep Sequence

Translation from 16 to 2599

> BO04843.pep
MNNNLFEGSDDDGEDLQLSTNKDYAKTYNILRKKELLQKYKDRGLDVSES
EFDSDSSSSEEDEVDPKFDQDFFKTLSSLKSKDPCIYDKGTKFFSESSGD
EDDKDGEAPKKKKKAKPVTLKDYERKVILEHNGKFESSDEEQQEKEHEEL
QRAQSPSAVEEERRLKAEFRKVMNKEDDSEDEEFGGIFKKRSKTKEQTAA
EEADFAKWLAGKQAEIQETDKKQLEPLKQYWSSNKLTQGESFLRDYILNK
GYANTDESAIPTYDEIVGEAAPLSEDEQELEKQAEFEHKYNFRFEEPDAD
FIKRYPRTIEQSLRRTDDKRKEKRKELKERKDQEKQQKMKELELVKEMKR
KEIDEKIRKLKAVTGNDELGFRDEELEEDFDPAAHDRRMQELFDDEYYNV
DEGEEKPECPSDIDELVLEDWDNYDPRQHANGGGEDYEGHCEDDDFNMDC
DYDPSTAKEQLQQELIENTRGRKGRKGRRNRFMEMIQAEKPAFNPEDEKT
YSEYIDEYYQMDCEDIIGDQPCRFKYVETTPNDFGLTIEEILLAKNKELN
QWASLKKAVQNRPEHVEKKEQRLYKMKAKNEDLKRKIFKSLYGEGSDDEE
QPAEEKPEVTPAEATAPAENGQVSTEGLSKSKRKRLKRKAAAAAASAPKV
LKEESDSKDPKEADGSTEDVQAESSKKKVDTPSKKGKDDANQETKNSPQS
TEKTKNNNALKNNKKEPKNVQNGFQKPQNQANKSAKTKSNQPFKTTESAP
AKAEKSNGNNPFNKPQSKSQQRQELPPIHKNQGGNKKGPRNANGTNPFKK
SNQKPSAPFPAKKTNNFKAKNKQNNNSGITDDRLKAYGINPRKFHKREKY
GKKDNASFLDH

BO04843.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5645-PA 855 CG5645-PA 1..855 1..855 4487 100 Plus
Strn-Mlck-PT 7905 CG44162-PT 4239..5010 1..756 222 19.8 Plus
Strn-Mlck-PV 7944 CG44162-PV 4278..5049 1..756 222 19.8 Plus
Strn-Mlck-PS 8216 CG44162-PS 4239..5010 1..756 222 19.8 Plus
Strn-Mlck-PU 8255 CG44162-PU 4278..5049 1..756 222 19.8 Plus
Strn-Mlck-PT 7905 CG44162-PT 4109..4985 47..860 220 20.7 Plus
Strn-Mlck-PV 7944 CG44162-PV 4148..5024 47..860 220 20.7 Plus
Strn-Mlck-PS 8216 CG44162-PS 4109..4985 47..860 220 20.7 Plus
Strn-Mlck-PT 7905 CG44162-PT 3442..4165 34..756 218 21.3 Plus
Strn-Mlck-PT 7905 CG44162-PT 3549..4295 26..756 218 20.1 Plus
Strn-Mlck-PV 7944 CG44162-PV 3481..4204 34..756 218 21.3 Plus
Strn-Mlck-PV 7944 CG44162-PV 3588..4334 26..756 218 20.1 Plus
Strn-Mlck-PS 8216 CG44162-PS 3442..4165 34..756 218 21.3 Plus
Strn-Mlck-PS 8216 CG44162-PS 3549..4295 26..756 218 20.1 Plus
Strn-Mlck-PT 7905 CG44162-PT 4174..4944 1..755 216 19.2 Plus
Strn-Mlck-PV 7944 CG44162-PV 4213..4983 1..755 216 19.2 Plus
Strn-Mlck-PS 8216 CG44162-PS 4174..4944 1..755 216 19.2 Plus
Strn-Mlck-PT 7905 CG44162-PT 3659..4425 9..756 211 20.4 Plus
Strn-Mlck-PV 7944 CG44162-PV 3698..4464 9..756 211 20.4 Plus
Strn-Mlck-PS 8216 CG44162-PS 3659..4425 9..756 211 20.4 Plus
Strn-Mlck-PT 7905 CG44162-PT 4044..4815 1..756 208 20.3 Plus
Strn-Mlck-PV 7944 CG44162-PV 4083..4854 1..756 208 20.3 Plus
Strn-Mlck-PS 8216 CG44162-PS 4044..4815 1..756 208 20.3 Plus
Strn-Mlck-PT 7905 CG44162-PT 4394..5077 26..756 205 19.9 Plus
Strn-Mlck-PV 7944 CG44162-PV 4433..5116 26..756 205 19.9 Plus
Strn-Mlck-PS 8216 CG44162-PS 4394..5077 26..756 205 19.9 Plus
Strn-Mlck-PT 7905 CG44162-PT 4504..5212 9..698 185 20.3 Plus
Strn-Mlck-PV 7944 CG44162-PV 4543..5251 9..698 185 20.3 Plus
Strn-Mlck-PS 8216 CG44162-PS 4504..5212 9..698 185 20.3 Plus