Clone BO04844 Report

Search the DGRC for BO04844

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptkappaB-Ras-RA
Protein status:BO04844.pep: validated full length
Sequenced Size:637

Clone Sequence Records

BO04844.3prime Sequence

635 bp (634 high quality bases) assembled on 2005-12-02

> BO04844.3prime
ATGGTCTAGAAAGCTTGCAGCCTCGCTCTTCTGCCGGTTCTGCATAACTT
GGCGCAGCTGAGGGAACGTGCTCTTCGTCTGCATTGGGTGCAGCCGGGCG
CAGAGCGTGGTGAATGGCTCGTAGAGGGAGGGACGCTCCATGGCGTTCAC
CGTGTAGTGCTTTATGCGCTCTCGCTGGCACCAGATGTTGGCGCGGTCCA
TGACCTTCTCGACGGGATTTGGGGCTGCTCGTGCCCTCACGTTGGCCAGC
ACCACAACGGGAATCTCCTTCTTCTCCTTGTGCTTCTCAATGTCAGCCTT
GATGTCGGCCAGCATGTCAAGGCTGCGCGGATCCATGGGATCGTAGACCA
GAACGAATGCATCTGGAAACTGAAGGTAGTGGCGTGGCAGCTGCTGCTGC
TCGCCCTGCAATCCGGCCGTGTCGTAGATGCGCAGGGTCTCTCGGGCTCC
GCCCCTGCCTGTATCCACGCTGGCCACGTAGATATCCTCAATGGTTGGAT
GCAGTTCCGTTTCGGGATTGACGTGGCCGTAGACCAGCTGCTCTATCAGC
GCCGTCTTGCCCACGCCCTTCATCCCGCACACCAGTACCTTGCCGACCTT
CCCGATCTTGGCATTTAGCATGTCGACTGATAACT

BO04844.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1669-PA 606 kappaB-Ras-RA 1..603 621..19 3015 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 1842 CG30503-RB 98..700 621..19 3015 100 Minus
kappaB-Ras-RB 1842 CG1669-RB 98..700 621..19 3015 100 Minus
kappaB-Ras-RC 933 CG1669-RC 98..700 621..19 3015 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7445029..7445518 19..508 2450 100 Plus
2R 25286936 2R 7445581..7445695 507..621 575 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:40:19 has no hits.

BO04844.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:17 Download gff for BO04844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1669-PA 1..606 18..621 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:12 Download gff for BO04844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1669-PA 1..606 18..621 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:10 Download gff for BO04844.3prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RA 98..705 12..621 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:30 Download gff for BO04844.3prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RC 98..705 12..621 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:30 Download gff for BO04844.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7445026..7445517 19..507 99 <- Plus
2R 7445582..7445695 508..621 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:10 Download gff for BO04844.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3332531..3333022 19..507 99 <- Plus
arm_2R 3333087..3333200 508..621 100   Plus

BO04844.5prime Sequence

635 bp (634 high quality bases) assembled on 2005-11-29

> BO04844.5prime
GAAGTTATCAGTCGACATGCTAAATGCCAAGATCGGGAAGGTCGGCAAGG
TACTGGTGTGCGGGATGAAGGGCGTGGGCAAGACGGCGCTGATAGAGCAG
CTGGTCTACGGCCACGTCAATCCCGAAACGGAACTGCATCCAACCATTGA
GGATATCTACGTGGCCAGCGTGGATACAGGCAGGGGCGGAGCCCGAGAGA
CCCTGCGCATCTACGACACGGCCGGATTGCAGGGCGAGCAGCAGCAGCTG
CCACGCCACTACCTTCAGTTTCCAGATGCATTCGTTCTGGTCTACGATCC
CATGGATCCGCGCAGCCTTGACATGCTGGCCGACATCAAGGCTGACATTG
AGAAGCACAAGGAGAAGAAGGAGATTCCCGTTGTGGTGCTGGCCAACGTG
AGGGCACGAGCAGCCCCAAATCCCGTCGAGAAGGTCATGGACCGCGCCAA
CATCTGGTGCCAGCGAGAGCGCATAAAGCACTACACGGTGAACGCCATGG
AGCGTCCCTCCCTCTACGAGCCATTCACCACGCTCTGCGCCCGGCTGCAC
CCAATGCAGACGAAGAGCACGTTCCCTCAGCTGCGCCAAGTTATGCAGAA
CCGGCAGAAGAGCGAGGCTGCAAGCTTTCTAGACC

BO04844.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1669-PA 606 kappaB-Ras-RA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 1842 CG30503-RB 98..700 17..619 3015 100 Plus
kappaB-Ras-RB 1842 CG1669-RB 98..700 17..619 3015 100 Plus
kappaB-Ras-RC 933 CG1669-RC 98..700 17..619 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7445029..7445518 619..130 2450 100 Minus
2R 25286936 2R 7445581..7445695 131..17 575 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:11:48 has no hits.

BO04844.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:17 Download gff for BO04844.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1669-PA 1..606 17..620 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:13 Download gff for BO04844.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1669-PA 1..606 17..620 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:49 Download gff for BO04844.5prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RA 98..705 17..626 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:27 Download gff for BO04844.5prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RC 98..705 17..626 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:27 Download gff for BO04844.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7445026..7445517 131..619 99 <- Minus
2R 7445582..7445695 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:49 Download gff for BO04844.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3332531..3333022 131..619 99 <- Minus
arm_2R 3333087..3333200 17..130 100   Minus

BO04844.complete Sequence

637 bp (637 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629891

> BO04844.complete
GAAGTTATCAGTCGACATGCTAAATGCCAAGATCGGGAAGGTCGGCAAGG
TACTGGTGTGCGGGATGAAGGGCGTGGGCAAGACGGCGCTGATAGAGCAG
CTGGTCTACGGCCACGTCAATCCCGAAACGGAACTGCATCCAACCATTGA
GGATATCTACGTGGCCAGCGTGGATACAGGCAGGGGCGGAGCCCGAGAGA
CCCTGCGCATCTACGACACGGCCGGATTGCAGGGCGAGCAGCAGCAGCTG
CCACGCCACTACCTTCAGTTTCCAGATGCATTCGTTCTGGTCTACGATCC
CATGGATCCGCGCAGCCTTGACATGCTGGCCGACATCAAGGCTGACATTG
AGAAGCACAAGGAGAAGAAGGAGATTCCCGTTGTGGTGCTGGCCAACGTG
AGGGCACGAGCAGCCCCAAATCCCGTCGAGAAGGTCATGGACCGCGCCAA
CATCTGGTGCCAGCGAGAGCGCATAAAGCACTACACGGTGAACGCCATGG
AGCGTCCCTCCCTCTACGAGCCATTCACCACGCTCTGCGCCCGGCTGCAC
CCAATGCAGACGAAGAGCACGTTCCCTCAGCTGCGCCAAGTTATGCAGAA
CCGGCAGAAGAGCGAGGCTGCAAGCTTTCTAGACCAT

BO04844.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
kappaB-Ras-RB 606 CG1669-PB 1..603 17..619 3015 100 Plus
kappaB-Ras-RC 606 CG1669-PC 1..603 17..619 3015 100 Plus
kappaB-Ras-RA 606 CG1669-PA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 1842 CG30503-RB 98..700 17..619 3015 100 Plus
kappaB-Ras-RB 1842 CG1669-RB 98..700 17..619 3015 100 Plus
kappaB-Ras-RC 933 CG1669-RC 98..700 17..619 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7445029..7445518 619..130 2450 100 Minus
2R 25286936 2R 7445581..7445695 131..17 575 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:19:00 has no hits.

BO04844.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:50 Download gff for BO04844.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RB 1..606 17..620 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:26 Download gff for BO04844.complete
Subject Subject Range Query Range Percent Splice Strand
CG30503-RB 67..674 17..626 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:51 Download gff for BO04844.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RA 98..700 17..621 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:50 Download gff for BO04844.complete
Subject Subject Range Query Range Percent Splice Strand
CG30503-RB 67..674 17..626 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:38 Download gff for BO04844.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RC 98..700 17..621 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:38 Download gff for BO04844.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7445025..7445517 131..621 99 <- Minus
2R 7445582..7445695 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:51 Download gff for BO04844.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3332530..3333022 131..621 99 <- Minus
arm_2R 3333087..3333200 17..130 100   Minus

BO04844.pep Sequence

Translation from 16 to 637

> BO04844.pep
MLNAKIGKVGKVLVCGMKGVGKTALIEQLVYGHVNPETELHPTIEDIYVA
SVDTGRGGARETLRIYDTAGLQGEQQQLPRHYLQFPDAFVLVYDPMDPRS
LDMLADIKADIEKHKEKKEIPVVVLANVRARAAPNPVEKVMDRANIWCQR
ERIKHYTVNAMERPSLYEPFTTLCARLHPMQTKSTFPQLRQVMQNRQKSE
AASFLDH

BO04844.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
kappaB-Ras-PB 201 CG1669-PB 1..201 1..201 1047 100 Plus
kappaB-Ras-PC 201 CG1669-PC 1..201 1..201 1047 100 Plus
kappaB-Ras-PA 201 CG1669-PA 1..201 1..201 1047 100 Plus