Clone Sequence Records
BO04844.3prime Sequence
635 bp (634 high quality bases) assembled on 2005-12-02
> BO04844.3prime
ATGGTCTAGAAAGCTTGCAGCCTCGCTCTTCTGCCGGTTCTGCATAACTT
GGCGCAGCTGAGGGAACGTGCTCTTCGTCTGCATTGGGTGCAGCCGGGCG
CAGAGCGTGGTGAATGGCTCGTAGAGGGAGGGACGCTCCATGGCGTTCAC
CGTGTAGTGCTTTATGCGCTCTCGCTGGCACCAGATGTTGGCGCGGTCCA
TGACCTTCTCGACGGGATTTGGGGCTGCTCGTGCCCTCACGTTGGCCAGC
ACCACAACGGGAATCTCCTTCTTCTCCTTGTGCTTCTCAATGTCAGCCTT
GATGTCGGCCAGCATGTCAAGGCTGCGCGGATCCATGGGATCGTAGACCA
GAACGAATGCATCTGGAAACTGAAGGTAGTGGCGTGGCAGCTGCTGCTGC
TCGCCCTGCAATCCGGCCGTGTCGTAGATGCGCAGGGTCTCTCGGGCTCC
GCCCCTGCCTGTATCCACGCTGGCCACGTAGATATCCTCAATGGTTGGAT
GCAGTTCCGTTTCGGGATTGACGTGGCCGTAGACCAGCTGCTCTATCAGC
GCCGTCTTGCCCACGCCCTTCATCCCGCACACCAGTACCTTGCCGACCTT
CCCGATCTTGGCATTTAGCATGTCGACTGATAACT
BO04844.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1669-PA | 606 | kappaB-Ras-RA | 1..603 | 621..19 | 3015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30503-RB | 1842 | CG30503-RB | 98..700 | 621..19 | 3015 | 100 | Minus |
kappaB-Ras-RB | 1842 | CG1669-RB | 98..700 | 621..19 | 3015 | 100 | Minus |
kappaB-Ras-RC | 933 | CG1669-RC | 98..700 | 621..19 | 3015 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7445029..7445518 | 19..508 | 2450 | 100 | Plus |
2R | 25286936 | 2R | 7445581..7445695 | 507..621 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:40:19 has no hits.
BO04844.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:17 Download gff for
BO04844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1669-PA | 1..606 | 18..621 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:12 Download gff for
BO04844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1669-PA | 1..606 | 18..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:10 Download gff for
BO04844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RA | 98..705 | 12..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:30 Download gff for
BO04844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RC | 98..705 | 12..621 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:30 Download gff for
BO04844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7445026..7445517 | 19..507 | 99 | <- | Plus |
2R | 7445582..7445695 | 508..621 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:10 Download gff for
BO04844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3332531..3333022 | 19..507 | 99 | <- | Plus |
arm_2R | 3333087..3333200 | 508..621 | 100 | | Plus |
BO04844.5prime Sequence
635 bp (634 high quality bases) assembled on 2005-11-29
> BO04844.5prime
GAAGTTATCAGTCGACATGCTAAATGCCAAGATCGGGAAGGTCGGCAAGG
TACTGGTGTGCGGGATGAAGGGCGTGGGCAAGACGGCGCTGATAGAGCAG
CTGGTCTACGGCCACGTCAATCCCGAAACGGAACTGCATCCAACCATTGA
GGATATCTACGTGGCCAGCGTGGATACAGGCAGGGGCGGAGCCCGAGAGA
CCCTGCGCATCTACGACACGGCCGGATTGCAGGGCGAGCAGCAGCAGCTG
CCACGCCACTACCTTCAGTTTCCAGATGCATTCGTTCTGGTCTACGATCC
CATGGATCCGCGCAGCCTTGACATGCTGGCCGACATCAAGGCTGACATTG
AGAAGCACAAGGAGAAGAAGGAGATTCCCGTTGTGGTGCTGGCCAACGTG
AGGGCACGAGCAGCCCCAAATCCCGTCGAGAAGGTCATGGACCGCGCCAA
CATCTGGTGCCAGCGAGAGCGCATAAAGCACTACACGGTGAACGCCATGG
AGCGTCCCTCCCTCTACGAGCCATTCACCACGCTCTGCGCCCGGCTGCAC
CCAATGCAGACGAAGAGCACGTTCCCTCAGCTGCGCCAAGTTATGCAGAA
CCGGCAGAAGAGCGAGGCTGCAAGCTTTCTAGACC
BO04844.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1669-PA | 606 | kappaB-Ras-RA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30503-RB | 1842 | CG30503-RB | 98..700 | 17..619 | 3015 | 100 | Plus |
kappaB-Ras-RB | 1842 | CG1669-RB | 98..700 | 17..619 | 3015 | 100 | Plus |
kappaB-Ras-RC | 933 | CG1669-RC | 98..700 | 17..619 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7445029..7445518 | 619..130 | 2450 | 100 | Minus |
2R | 25286936 | 2R | 7445581..7445695 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:11:48 has no hits.
BO04844.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:17 Download gff for
BO04844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1669-PA | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:13 Download gff for
BO04844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1669-PA | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:49 Download gff for
BO04844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RA | 98..705 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:27 Download gff for
BO04844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RC | 98..705 | 17..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:27 Download gff for
BO04844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7445026..7445517 | 131..619 | 99 | <- | Minus |
2R | 7445582..7445695 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:49 Download gff for
BO04844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3332531..3333022 | 131..619 | 99 | <- | Minus |
arm_2R | 3333087..3333200 | 17..130 | 100 | | Minus |
BO04844.complete Sequence
637 bp (637 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629891
> BO04844.complete
GAAGTTATCAGTCGACATGCTAAATGCCAAGATCGGGAAGGTCGGCAAGG
TACTGGTGTGCGGGATGAAGGGCGTGGGCAAGACGGCGCTGATAGAGCAG
CTGGTCTACGGCCACGTCAATCCCGAAACGGAACTGCATCCAACCATTGA
GGATATCTACGTGGCCAGCGTGGATACAGGCAGGGGCGGAGCCCGAGAGA
CCCTGCGCATCTACGACACGGCCGGATTGCAGGGCGAGCAGCAGCAGCTG
CCACGCCACTACCTTCAGTTTCCAGATGCATTCGTTCTGGTCTACGATCC
CATGGATCCGCGCAGCCTTGACATGCTGGCCGACATCAAGGCTGACATTG
AGAAGCACAAGGAGAAGAAGGAGATTCCCGTTGTGGTGCTGGCCAACGTG
AGGGCACGAGCAGCCCCAAATCCCGTCGAGAAGGTCATGGACCGCGCCAA
CATCTGGTGCCAGCGAGAGCGCATAAAGCACTACACGGTGAACGCCATGG
AGCGTCCCTCCCTCTACGAGCCATTCACCACGCTCTGCGCCCGGCTGCAC
CCAATGCAGACGAAGAGCACGTTCCCTCAGCTGCGCCAAGTTATGCAGAA
CCGGCAGAAGAGCGAGGCTGCAAGCTTTCTAGACCAT
BO04844.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:19:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kappaB-Ras-RB | 606 | CG1669-PB | 1..603 | 17..619 | 3015 | 100 | Plus |
kappaB-Ras-RC | 606 | CG1669-PC | 1..603 | 17..619 | 3015 | 100 | Plus |
kappaB-Ras-RA | 606 | CG1669-PA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:19:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30503-RB | 1842 | CG30503-RB | 98..700 | 17..619 | 3015 | 100 | Plus |
kappaB-Ras-RB | 1842 | CG1669-RB | 98..700 | 17..619 | 3015 | 100 | Plus |
kappaB-Ras-RC | 933 | CG1669-RC | 98..700 | 17..619 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7445029..7445518 | 619..130 | 2450 | 100 | Minus |
2R | 25286936 | 2R | 7445581..7445695 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:19:00 has no hits.
BO04844.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:50 Download gff for
BO04844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RB | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:26 Download gff for
BO04844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30503-RB | 67..674 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:51 Download gff for
BO04844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RA | 98..700 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:50 Download gff for
BO04844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30503-RB | 67..674 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:38 Download gff for
BO04844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RC | 98..700 | 17..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:38 Download gff for
BO04844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7445025..7445517 | 131..621 | 99 | <- | Minus |
2R | 7445582..7445695 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:51 Download gff for
BO04844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3332530..3333022 | 131..621 | 99 | <- | Minus |
arm_2R | 3333087..3333200 | 17..130 | 100 | | Minus |
BO04844.pep Sequence
Translation from 16 to 637
> BO04844.pep
MLNAKIGKVGKVLVCGMKGVGKTALIEQLVYGHVNPETELHPTIEDIYVA
SVDTGRGGARETLRIYDTAGLQGEQQQLPRHYLQFPDAFVLVYDPMDPRS
LDMLADIKADIEKHKEKKEIPVVVLANVRARAAPNPVEKVMDRANIWCQR
ERIKHYTVNAMERPSLYEPFTTLCARLHPMQTKSTFPQLRQVMQNRQKSE
AASFLDH
BO04844.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kappaB-Ras-PB | 201 | CG1669-PB | 1..201 | 1..201 | 1047 | 100 | Plus |
kappaB-Ras-PC | 201 | CG1669-PC | 1..201 | 1..201 | 1047 | 100 | Plus |
kappaB-Ras-PA | 201 | CG1669-PA | 1..201 | 1..201 | 1047 | 100 | Plus |