Clone Sequence Records
BO04846.3prime Sequence
874 bp (783 high quality bases) assembled on 2005-12-02
> BO04846.3prime
ATGGTCTAGAAAGCTTGCTCTTTGTAATCTCAAAAAGAAGGCATTTCTGC
TCTGTTTCGAGTCCAGAGGCAGATACTTGTCATAAAAGTCCAAGATGATT
TCCTCCATCTTAAATCCGAATTTCTGGTACAACATGACGGCCGCGTTGGT
GGCGGAAACGTGCAACGTTATGTCCTTGGACATACATGTCTGGATAAGGT
GATATAACATGAAGCTGGCGATGCCACTGCGTTGCCAGCACGGCCGCACC
GCCATGAATGAGATGTAGGCCTCGTTGTAACCTACGTCGGGCACTAGGAA
TCCGCAACCGATGACCAGTTTCTTGTACAACGCCACTACACTGTAGTCCG
GGTAGCTCAAACACTCGCTTACATCAATGTTTGGCCAAAAAGTACTTTGG
AGTAATGCGTTTACGGCCGGAATATGCTGCGGTCTCACAAAACAGAAGTC
GATGGTAGATCTTGTGGGATGAGATCCGTTTACTCTATGCTGCAGCTCGC
ACATAAGCTTCAGCCATGGAGGAGCCATCGTTTCGCTCCGAAAGATAAAT
GGATGAAGAACTCTTTGAGAGTAGGGCGATTCAAAGAGCTCGTATTGAGT
GCATCCCGCCAGGCGGGCGTGAAAGGAGCTCCTTGCATCTTGTCGTGAAT
GGGCTAACAACTGATATCTGTCAAGAATTTCGGCCTTCTGATGACCCAGC
ATCTTTAGGCGTGCTCTTCCCAGGGGATCTATGTGCTCGTCCAAGTTAAA
TATGTGTCGATTGTGGTCCCTTTTCCATTTTCGAAGAGAAAGTTTTCGAT
ATAGGCGCCGCACATAGGCAGGTATGGATATGTGGCACTGATGCTCCAGT
GCGAATATTCTATCGAGTCGCTGG
BO04846.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10414-PA | 2325 | CG10414-RA | 1467..2322 | 874..19 | 4280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac2-RA | 2427 | CG10414-RA | 1538..2393 | 874..19 | 4280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18610029..18610531 | 372..874 | 2515 | 100 | Plus |
| 2L | 23513712 | 2L | 18609610..18609963 | 19..372 | 1770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:13:38 has no hits.
BO04846.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:18 Download gff for
BO04846.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10414-PA | 1467..2325 | 16..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:15 Download gff for
BO04846.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10414-PA | 1467..2325 | 16..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:24 Download gff for
BO04846.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac2-RA | 1538..2402 | 10..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:41:58 Download gff for
BO04846.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac2-RA | 1538..2402 | 10..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:41:58 Download gff for
BO04846.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18609601..18609962 | 10..371 | 98 | <- | Plus |
| 2L | 18610029..18610531 | 372..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:24 Download gff for
BO04846.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18609601..18609962 | 10..371 | 98 | <- | Plus |
| arm_2L | 18610029..18610531 | 372..874 | 100 | | Plus |
BO04846.5prime Sequence
862 bp (833 high quality bases) assembled on 2005-12-02
> BO04846.5prime
GAAGTTATCAGTCGACATGAATCGGCCCAGTAACTGGGATGATCCCCAGG
GACCATGCCGCTACTGTGAATCGCCGGTGGAGGACGACAACTACCTGGAG
TGCCAGGAATGCAGGCGGATGGTTCACATCAAATGCCTGCCGCATGCTTG
CACGCCCGGAGATCTTTTAGGCGACGTTTTCTTCGAGTTCACGTGCGTCA
AGTGTGTGCTGGATAAAGCTAAGGAATCGGTCATACCCTCAGATCTAGAA
CCCATTAAGGAAGTGATCGTGCGCCAAAGGATACCTTGGCTGCTGGTGCT
CACCCTAACGCTCTACAATCTGTCCATCAAACAAAAGGGCTTGGGACACC
ATGGATTCTTCCATTGGCGCACGCACATCATCAGTTTTGTGGACAAGAAC
TGGAACTATATATTCGGTCCCAATGTGCGGCGTCGCAAGCAATGGACTGG
TTCCGTATCCGGCGCACTGTCCCACAACAGTCCGGAGTACTTTCAGTCTG
GTCTGGATGTCTTTCAGGAGAACGGCTGGTGGAAACTGGCCAAGCCCTTT
CAAACCCCAAGAAGCGTTCTCAAAGAATATGAGAAAAAGCAACAGTTGCG
GCTACAAATGCGTATTGAAAAGCGGTTGCCTGCAGCGGACGAGACCAGCT
GTAGCAGCGAGATCTCAGTGGCGGATCATGCCCAGGATAACCCACCGCTT
ATTAAAGCAGAAGCTGAGAAACCCAGTTCAACAGAGGGCTGTGCGCGAAC
AATTCCCTACATGGGCCGTTTGCCAAAGATACAAACACAACCTTCACCCT
TGTCACAGGAAACGCTTCCAGGGCCACCAATTCTTTCAGAAAATATAGCG
CCACCAAGTCAG
BO04846.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10414-PA | 2325 | CG10414-RA | 1..846 | 17..862 | 4180 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:48:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac2-RA | 2427 | CG10414-RA | 72..917 | 17..862 | 4200 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18611768..18612178 | 427..17 | 2055 | 100 | Minus |
| 2L | 23513712 | 2L | 18611327..18611501 | 753..579 | 875 | 100 | Minus |
| 2L | 23513712 | 2L | 18611557..18611708 | 578..427 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 18611152..18611260 | 862..754 | 515 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:48:37 has no hits.
BO04846.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:19 Download gff for
BO04846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10414-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:17 Download gff for
BO04846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10414-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:50 Download gff for
BO04846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac2-RA | 61..917 | 5..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:18 Download gff for
BO04846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac2-RA | 61..917 | 5..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:18 Download gff for
BO04846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18611152..18611260 | 754..862 | 98 | <- | Minus |
| 2L | 18611327..18611501 | 579..753 | 100 | <- | Minus |
| 2L | 18611557..18611708 | 427..578 | 100 | <- | Minus |
| 2L | 18611769..18612189 | 5..426 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:50 Download gff for
BO04846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18611152..18611260 | 754..862 | 98 | <- | Minus |
| arm_2L | 18611327..18611501 | 579..753 | 100 | <- | Minus |
| arm_2L | 18611557..18611708 | 427..578 | 100 | <- | Minus |
| arm_2L | 18611769..18612189 | 5..426 | 98 | | Minus |
BO04846.complete Sequence
2356 bp assembled on 2008-08-14
GenBank Submission: FJ629892
> BO04846.complete
GAAGTTATCAGTCGACATGAATCGGCCCAGTAACTGGGATGATCCCCAGG
GACCATGCCGCTACTGTGAATCGCCGGTGGAGGACGACAACTACCTGGAG
TGCCAGGAATGCAGGCGGATGGTTCACATCAAATGCCTGCCGCATGCTTG
CACGCCCGGAGATCTTTTAGGCGACGTTTTCTTCGAGTTCACGTGCGTCA
AGTGTGTGCTGGATAAAGCTAAGGAATCGGTCATACCCTCAGATCTAGAA
CCCATTAAGGAAGTGATCGTGCGCCAAAGGATACCTTGGCTGCTGGTGCT
CACCCTAACGCTCTACAATCTGTCCATCAAACAAAAGGGCTTGGGACACC
ATGGATTCTTCCATTGGCGCACGCACATCATCAGTTTTGTGGACAAGAAC
TGGAACTATATATTCGGTCCCAATGTGCGGCGTCGCAAGCAATGGACTGG
TTCCGTATCCGGCGCACTGTCCCACAACAGTCCGGAGTACTTTCAGTCTG
GTCTGGATGTCTTTCAGGAGAACGGCTGGTGGAAACTGGCCAAGCCCTTT
CAAACCCCAAGAAGCGTTCTCAAAGAATATGAGAAAAAGCAACAGTTGCG
GCTACAAATGCGTATTGAAAAGCGGTTGCCTGCAGCGGACGAGACCAGCT
GTAGCAGCGAGATCTCAGTGGCGGATCATGCCCAGGATAACCCACCGCTT
ATTAAAGCAGAAGCTGAGAAACCCAGTTCAACAGAGGGCTGTGCGCGAAC
AATTCCCTACATGGGCCGTTTGCCAAAGATACAAACACAACCTTCACCCT
TGTCACAGGAAACGCTTCCAGGGCCACCAATTCTTCAAGAAAATATAGCG
CCACCAAGTCAGAAGGAGGAAGAACCACAGAATCAGCCTATGAGCATGGT
CCAAGCAGGCCTGATGGATTTTCTGGCTGAAAGTTTGGAAAGCGATGATT
TTACCATGTTTGGTAACCTACCAGGCATAATGCCCCCACCCCTGATTGGA
GCGGGTAAAAATGATTTCTTCATGACCGAGCCGTTGCTTCACGCACCTTT
GAATAATGAAGGTCTTTTCGACATGGATACAAATTTTGCCATACCAAATA
CCGCTGATGAGACCAAACCCATATCAACAGAAGAACCTGCAGCCGAAAGC
AGCGAGGAACAAAAAGAAGGCGAGGTAGAAGATGAAAAGCCAGAAGAGGA
CGAATCACCCGACTATCAGCCACGCATCGTACAGGTTACAAATTACCAGG
CGCAAGAGGCAAACGAAAGCATCAAAGAGGAACCACTAGAAGAGATAATG
CAAGATGATGACGTCACGACAAATAGCAAATCCTCTATCCTAGAGCCTTG
CAAACCGAGTGGATTTGTCAGACAACCACGGCGAAATTGGCCCTGGTTGC
AGGAGGCGCAGGATCCCGATGACATGGCCATTCCTAGCGAAAATCTCAAA
CTAATAAATGCATACGAAGAACAGAAGTTGTACCAGCGACTCGATAGAAT
ATTCGCACTGGAGCATCAGTGCCACATATCCATACCTGCCTATGTGCGGC
GCCTATATCGAAAACTTTCTCTTCGAAAATGGAAAAGGGACCACAATCGA
CACATATTTAACTTGGACGAGCACATAGATCCCCTGGGAAGAGCACGCCT
AAAGATGCTGGGTCATCAGAAGGCCGAAATTCTTGACAGATATCAGTTGT
TAGCCCATTCACGACAAGATGCAAGGAGCTCCTTTCACGCCCGCCTGGCG
GGATGCACTCAATACGAGCTCTTTGAATCGCCCTACTCTCAAAGAGTTCT
TCATCCATTTATCTTTCGGAGCGAAACGATGGCTCCTCCATGGCTGAAGC
TTATGTGCGAGCTGCAGCATAGAGTAAACGGATCTCATCCCACAAGATCT
ACCATCGACTTCTGTTTTGTGAGACCGCAGCATATTCCGGCCGTAAACGC
ATTACTCCAAAGTACTTTTTGGCCAAACATTGATGTAAGCGAGTGTTTGA
GCTACCCGGACTACAGTGTAGTGGCGTTGTACAAGAAACTGGTCATCGGT
TGCGGATTCCTAGTGCCCGACGTAGGTTACAACGAGGCCTACATCTCATT
CATGGCGGTGCGGCCGTGCTGGCAACGCAGTGGCATCGCCAGCTTCATGT
TATATCACCTTATCCAGACATGTATGTCCAAGGACATAACGTTGCACGTT
TCCGCCACCAACGCGGCCGTCATGTTGTACCAGAAATTCGGATTTAAGAT
GGAGGAAATCATCTTGGACTTTTATGACAAGTATCTGCCTCTGGACTCGA
AACAGAGCAGAAATGCCTTCTTTTTGAGATTACAAAGAGCAAGCTTTCTA
GACCAT
BO04846.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac2-RA | 2325 | CG10414-PA | 1..2322 | 17..2338 | 11610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac2-RA | 2427 | CG10414-RA | 72..2393 | 17..2338 | 11610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18610029..18611260 | 1985..754 | 6160 | 100 | Minus |
| 2L | 23513712 | 2L | 18611768..18612178 | 427..17 | 2055 | 100 | Minus |
| 2L | 23513712 | 2L | 18609610..18609963 | 2338..1985 | 1770 | 100 | Minus |
| 2L | 23513712 | 2L | 18611327..18611501 | 753..579 | 875 | 100 | Minus |
| 2L | 23513712 | 2L | 18611557..18611708 | 578..427 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:14:18 has no hits.
BO04846.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:57 Download gff for
BO04846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10414-RA | 54..2395 | 5..2347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:28 Download gff for
BO04846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac2-RA | 72..2393 | 17..2340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:54 Download gff for
BO04846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10414-RA | 65..2386 | 17..2340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:37 Download gff for
BO04846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac2-RA | 72..2393 | 17..2340 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:37 Download gff for
BO04846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18609607..18609962 | 1986..2340 | 99 | <- | Minus |
| 2L | 18610029..18611260 | 754..1985 | 100 | <- | Minus |
| 2L | 18611327..18611501 | 579..753 | 100 | <- | Minus |
| 2L | 18611557..18611708 | 427..578 | 100 | <- | Minus |
| 2L | 18611769..18612178 | 17..426 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:28 Download gff for
BO04846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18609607..18609962 | 1986..2340 | 99 | <- | Minus |
| arm_2L | 18610029..18611260 | 754..1985 | 100 | <- | Minus |
| arm_2L | 18611327..18611501 | 579..753 | 100 | <- | Minus |
| arm_2L | 18611557..18611708 | 427..578 | 100 | <- | Minus |
| arm_2L | 18611769..18612178 | 17..426 | 100 | | Minus |
BO04846.pep Sequence
Translation from 16 to 2356
> BO04846.pep
MNRPSNWDDPQGPCRYCESPVEDDNYLECQECRRMVHIKCLPHACTPGDL
LGDVFFEFTCVKCVLDKAKESVIPSDLEPIKEVIVRQRIPWLLVLTLTLY
NLSIKQKGLGHHGFFHWRTHIISFVDKNWNYIFGPNVRRRKQWTGSVSGA
LSHNSPEYFQSGLDVFQENGWWKLAKPFQTPRSVLKEYEKKQQLRLQMRI
EKRLPAADETSCSSEISVADHAQDNPPLIKAEAEKPSSTEGCARTIPYMG
RLPKIQTQPSPLSQETLPGPPILQENIAPPSQKEEEPQNQPMSMVQAGLM
DFLAESLESDDFTMFGNLPGIMPPPLIGAGKNDFFMTEPLLHAPLNNEGL
FDMDTNFAIPNTADETKPISTEEPAAESSEEQKEGEVEDEKPEEDESPDY
QPRIVQVTNYQAQEANESIKEEPLEEIMQDDDVTTNSKSSILEPCKPSGF
VRQPRRNWPWLQEAQDPDDMAIPSENLKLINAYEEQKLYQRLDRIFALEH
QCHISIPAYVRRLYRKLSLRKWKRDHNRHIFNLDEHIDPLGRARLKMLGH
QKAEILDRYQLLAHSRQDARSSFHARLAGCTQYELFESPYSQRVLHPFIF
RSETMAPPWLKLMCELQHRVNGSHPTRSTIDFCFVRPQHIPAVNALLQST
FWPNIDVSECLSYPDYSVVALYKKLVIGCGFLVPDVGYNEAYISFMAVRP
CWQRSGIASFMLYHLIQTCMSKDITLHVSATNAAVMLYQKFGFKMEEIIL
DFYDKYLPLDSKQSRNAFFLRLQRASFLDH
BO04846.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac2-PA | 774 | CG10414-PA | 1..774 | 1..774 | 4156 | 100 | Plus |
