Clone Sequence Records
BO04847.3prime Sequence
805 bp (667 high quality bases) assembled on 2005-12-02
> BO04847.3prime
ATGGTCTAGAAAGCTTGCAAGATTATCAGATTGATGAGAGCCATTTTGTT
TTTTGTTTGCAATTCGGGACCCAAATTGAATAGCCCTTTTCTTTAAGAAC
ACAACATCTCGCAAACCGATTTGATAGCCATACAGTCTCAGAAGTAATTT
ATCGCCGACTCCTTCCGGGAAACCAAAGCAACATTTTTGATACACTTCTA
ACGATCTTATAAATTTTACAAAGTTCTCTTCGATGAATGGGGATCTTGCT
GTTTTACCAGTATCTGCAATAATGCGGTCATCTCTGGCTAAATTACGGGC
CGAAATACGTTGCCAGTCCCTTTCAAGTTCGTTTTGCACAGCAAGTTGGC
GCTCCAGATCGTTTCCCAGACAACGGCTATAACTGTTGCGATAGCGGGTA
TACCCACCAAATAGTTCATCTGCCCCGCTTCCGATAAGAGCGACTCTAGC
AGTAGAGTGAGTGCAATGCGAAGCAAACCAGAAGGCACATCCAAGACTCT
CATCTAATACCGTATCTAGCGGATATATAAGATGCTTTATACGTGATGTT
AGGTGCTGCTGCAATTCAAGTCGAGTTACATTCACTTTCAGTAGATTCCA
GCACCTCTCCGGACAAAGCTGTTTTAGTTCATTGACAGATACTAATGACG
TTTTTCTATCTGGTACATCAAAAAGCTTTTCCGATATATTTTGGCCCTTA
ACGCTTTCGAAAGCAACATTAATAAGTTCGATGGGTTCATTTACTGGTAC
AAATTGGTTGGGCCAGCAGGCCCAAATTGTACAGTCAAGGCCACCCCGAA
AATAG
BO04847.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17486-PA | 1728 | CG17486-RA | 983..1725 | 761..19 | 3715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17486-RB | 1804 | CG17486-RB | 943..1728 | 805..19 | 3850 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4619980..4620757 | 796..19 | 3800 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:48:42 has no hits.
BO04847.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:38:06 Download gff for
BO04847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-PA | 940..1728 | 15..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:52 Download gff for
BO04847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 943..1734 | 11..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:15 Download gff for
BO04847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 943..1734 | 11..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:15 Download gff for
BO04847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4619972..4620763 | 11..805 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:52 Download gff for
BO04847.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 507477..508268 | 11..805 | 99 | | Minus |
BO04847.5prime Sequence
837 bp (776 high quality bases) assembled on 2005-12-02
> BO04847.5prime
GAAGTTATCAGTCGACATGTGTGGAATATTTTGTTCAGTCGTGAACAATG
TTCCTTTAAACTCCTTTAATATTTCTAGCGCTCTGAAAGTAATTCTGAAA
AACCGCGGTCCTGATGTGCAAGACGAGGTGGTTATAGATTATTGTTTTGG
AAAAATTTTATTTGCTGGCTTCGTGTTATGGCAACAAGGGGAAAGTGTAC
AAAAGCAACCTGTGGTGGAGGACGATTTTATATTTCTTTTCAATGGAGAC
ATTTACAATACTTCAAAGCCTGAATATATGTCTGACACGACTTGGATAGC
GGAAAGGCTAGCTGAATGCCGTTGTAAAGAACAGAATATTTTGAAGATAC
TTAAGCGATTGGAGGGACCACATTGTTTAATAATTTATGACAAACGAGAA
CAAATCCTTTACTTTAGTCGCGACGCACTTGGAAGAAATTCACTATTAAT
TGAACGCATTTGTAATGGCTTCCAATTATTGAGCACATCACATTTTGAAG
ATAAAAAAATATCACTGGAATTGCCCCCATTGGGTCTTTTTCGAGTTAAA
CTAAATGATCTGAATTCGTGCGTATTGTATCCATGGCAGCCCCTCAATAA
TTATTCGACTCAGCTTTTACGCAACCTTGATCTTGCGATTGGGTGGAAAA
CTGCAGTAGAGAGTCCAATGTCGCCAGATTGGATGTTAAATTGCAACCCC
GCATTTAGTTATAACTTCTATGAATTTCAATACATCAAGAATAACGTGAA
CCTTTATAAAAACTTAATAGATCAGTCAGAAATTAAGTATACTCTATCTA
TTCTCCATACACTGCTATCCGATTCGATAAAAAATCG
BO04847.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17486-PA | 1728 | CG17486-RA | 34..854 | 17..837 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17486-RB | 1804 | CG17486-RB | 37..857 | 17..837 | 4105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4619066..4619886 | 17..837 | 4105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:48:47 has no hits.
BO04847.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:38:07 Download gff for
BO04847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-PA | 28..854 | 8..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:54 Download gff for
BO04847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 31..857 | 8..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:39 Download gff for
BO04847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 31..857 | 8..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:39 Download gff for
BO04847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4619060..4619886 | 8..837 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:54 Download gff for
BO04847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 506565..507391 | 8..837 | 99 | | Plus |
BO04847.complete Sequence
1726 bp (1726 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629893
> BO04847.complete
GAAGTTATCAGTCGACATGTGTGGAATATTTTGTTCAGTCGTGAACAATG
TTCCTTTAAACTCCTTTAATATTTCTAGCGCTCTGAAAGTAATTCTGAAA
AACCGCGGTCCTGATGTGCAAGACGAGGTGGTTATAGATTATTGTTTTGG
AAAAATTTTATTTGCTGGCTTCGTGTTATGGCAACAAGGGGAAAGTGTAC
AAAAGCAACCTGTGGTGGAGGACGATTTTATATTTCTTTTCAATGGAGAC
ATTTACAATACTTCAAAGCCTGAATATATGTCTGACACGACTTGGATAGC
GGAAAGGCTAGCTGAATGCCGTTGTAAAGAACAGAATATTTTGAAGATAC
TTAAGCGATTGGAGGGACCACATTGTTTAATAATTTATGACAAACGAGAA
CAAATCCTTTACTTTAGTCGCGACGCACTTGGAAGAAATTCACTATTAAT
TGAACGCATTTGTAATGGCTTCCAATTATTGAGCACATCACATTTTGAAG
ATAAAAAAATATCACTGGAATTGCCCCCATTGGGTCTTTTTCGAGTTAAA
CTAAATGATCTGAATTCGTGCGTATTGTATCCATGGCAGCCCCTCAATAA
TTATTCGACTCAGCTTTTACGCAACCTTGATCTTGCGATTGGGTGGAAAA
CTGCAGTAGAGAGTCCAATGTCGCCAGATTGGATGTTAAATTGCAACCCC
GCATTTAGTTATAACTTCTATGAATTTCAATACATCAAGAATAACGTGAA
CCTTTATAAAAACTTAATAGATCAGTCAGAAATTAAGTATACTCTATCTA
TTCTCCATACACTGCTATCCGATTCGATAAAAAATCGTGTTAGAAACATG
GCTCCATTTTGCAGACTCTGCATGCAAAAATTAAATATATCGCCTCCATG
CAGACACGCAAAATTGTGTATTCTATTTTCGGGTGGCCTTGACTGTACAA
TTTTGGCCTTGCTGGCCAACCAATTTGTACCAGTAAATGAACCCATCGAA
CTTATTAATGTTGCTTTCGAAAGCGTTAAGGGCCAAAATATATCGGAAAA
GCTTTTTGATGTACCAGATAGAAAAACGTCATTAGTATCTGTCAATGAAC
TAAAACAGCTTTGTCCGGAGAGGTGCTGGAATCTACTGAAAGTGAATGTA
ACTCGACTTGAATTGCAGCAGCACCTAACATCACGTATAAAGCATCTTAT
ATATCCGCTAGATACGGTATTAGATGAGAGTCTTGGATGTGCCTTCTGGT
TTGCTTCGCATTGCACTCACTCTACTGCTAGAGTCGCTCTTATCGGAAGC
GGGGCAGATGAACTATTTGGTGGGTATACCCGCTATCGCAACAGTTATAG
CCGTTGTCTGGGAAACGATCTGGAGCGCCAACTTGCTGTGCAAAACGAAC
TTGAAAGGGACTGGCAACGTATTTCGGCCCGTAATTTAGCCAGAGATGAC
CGCATTATTGCAGATACTGGTAAAACAGCAAGATCCCCATTCATCGAAGA
GAACTTTGTAAAATTTATAAGATCGTTAGAAGTGTATCAAAAATGTTGCT
TTGGTTTCCCGGAAGGAGTCGGCGATAAATTACTTCTGAGACTGTATGGC
TATCAAATCGGTTTGCGAGATGTTGTGTTCTTAAAGAAAAGGGCTATTCA
ATTTGGGTCCCGAATTGCAAACAAAAAACAAAATGGCTCTCATCAATCTG
ATAATCTTGCAAGCTTTCTAGACCAT
BO04847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17486-RB | 1695 | CG17486-PB | 1..1692 | 17..1708 | 8460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17486-RB | 1804 | CG17486-RB | 37..1728 | 17..1708 | 8460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4619066..4620757 | 17..1708 | 8460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:04:02 has no hits.
BO04847.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:02 Download gff for
BO04847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 1..1695 | 17..1712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:07 Download gff for
BO04847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 32..1735 | 8..1716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:39 Download gff for
BO04847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 37..1728 | 17..1710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:02 Download gff for
BO04847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 32..1735 | 8..1716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:29 Download gff for
BO04847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 37..1728 | 17..1710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:29 Download gff for
BO04847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4619066..4620757 | 17..1710 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:39 Download gff for
BO04847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 506571..508262 | 17..1710 | 99 | | Plus |
BO04847.pep Sequence
Translation from 16 to 1726
> BO04847.pep
MCGIFCSVVNNVPLNSFNISSALKVILKNRGPDVQDEVVIDYCFGKILFA
GFVLWQQGESVQKQPVVEDDFIFLFNGDIYNTSKPEYMSDTTWIAERLAE
CRCKEQNILKILKRLEGPHCLIIYDKREQILYFSRDALGRNSLLIERICN
GFQLLSTSHFEDKKISLELPPLGLFRVKLNDLNSCVLYPWQPLNNYSTQL
LRNLDLAIGWKTAVESPMSPDWMLNCNPAFSYNFYEFQYIKNNVNLYKNL
IDQSEIKYTLSILHTLLSDSIKNRVRNMAPFCRLCMQKLNISPPCRHAKL
CILFSGGLDCTILALLANQFVPVNEPIELINVAFESVKGQNISEKLFDVP
DRKTSLVSVNELKQLCPERCWNLLKVNVTRLELQQHLTSRIKHLIYPLDT
VLDESLGCAFWFASHCTHSTARVALIGSGADELFGGYTRYRNSYSRCLGN
DLERQLAVQNELERDWQRISARNLARDDRIIADTGKTARSPFIEENFVKF
IRSLEVYQKCCFGFPEGVGDKLLLRLYGYQIGLRDVVFLKKRAIQFGSRI
ANKKQNGSHQSDNLASFLDH
BO04847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17486-PB | 564 | CG17486-PB | 1..564 | 1..564 | 2978 | 100 | Plus |
