Clone BO04848 Report

Search the DGRC for BO04848

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG3156-RA
Protein status:BO04848.pep: Imported from assembly
Sequenced Size:2110

Clone Sequence Records

BO04848.3prime Sequence

869 bp (815 high quality bases) assembled on 2005-12-02

> BO04848.3prime
ATGGTCTAGAAAGCTTGCGTTTCGGCTACCGAACGCTTGGCTGGCCACCA
GTTCCCGGAAGACGCCCTCCTGGATGCCCATAAGCTCGTTGTAGCTGCCC
TGCTCTACAATTTTTCCGTCGCTTAAGACGGCGATTTGATCCGCATTTCG
AATTGTACTGAGTCGATGGGCAATTGTCAGTACGGTGCGTCCCTGGATAA
GATTGTCTAAGGCATTCTGCACCAGATTTTCCGAAACGGCGTCCAACGCA
CTGGTAGCTTCATCCAAAATCAGGATAGCGGGGTTCTTAATTAGAGCCCT
GGCAATGGCTACTCTTTGCTTTTGTCCGCCACTGAGCATCATTCCCCGTT
GGCCGACGAGCGTGTCTAGTCCATCCGGCAGTTGGTCGGTGAACTGGCTG
ACATTTGCATCTTCAATAACCTGCTGCAGTCGCTCCGGGCTCGGTGTTTC
GCCAGGATTAGCGCCATAAAGAATATTCTCTCGAATGGAGCACGAGAAGA
GCACCGGCTCCTGACTGACGGCACCAATGTTATTTCGCAACCACTGTGGA
TTCACTGTTCGCAAATCTATGCCATCCAAATGCACTGTTCCCCCTTGGGG
GTCATATAGTCGGAGCATTAGCAGAGCTATCGTCGTCTTTCCAGATCCTG
AACGACCCACTACCGCTGTGGTTGTTCCCGGCATCAAATTTAGCGAAAAG
TCGGTGAGGACGGCCGATTCAGGTCTAGTTGGAAACGTAAAGAATACATT
CTGGAATCCAACTTCGCCCACCGGCTTCTCCAACGGCACGACACCTTTGT
CAATGGGTATAGAACACTCCCTGTCCAGGATCTCCAAATACGCTCCGAGG
CTCCAATGCCTTTGTTCAG

BO04848.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3156-PA 2079 CG3156-RA 1260..2076 835..19 4060 99.8 Minus
CG3156-PA 2079 CG3156-RA 1225..1260 869..834 180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3156-RA 2345 CG3156-RA 1337..2188 869..19 4220 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 489644..490228 869..286 2875 99.8 Minus
X 23542271 X 490300..490568 287..19 1330 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 06:29:13 has no hits.

BO04848.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:21 Download gff for BO04848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-PA 1225..2079 15..869 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:19 Download gff for BO04848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-PA 1225..2079 15..869 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:30 Download gff for BO04848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 1337..2191 15..869 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:01 Download gff for BO04848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 1337..2191 15..869 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:01 Download gff for BO04848.3prime
Subject Subject Range Query Range Percent Splice Strand
X 489644..490228 286..869 99 -> Minus
X 490302..490571 15..285 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:30 Download gff for BO04848.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 383677..384261 286..869 99 -> Minus
arm_X 384335..384604 15..285 98   Minus

BO04848.5prime Sequence

888 bp (881 high quality bases) assembled on 2005-12-02

> BO04848.5prime
GAAGTTATCAGTCGACATGCTGTTAAACTGTACGAGGCTCACACACCTCT
GCACGACTCTCCGGGTCAGGAAAAGCAGCCAAATAAGGTTGTCCACATCA
TATAATCACCATTTGGGCAGGTGCCTCCACCATCGAACCGCCCGGTCGCT
TCAACACAGCCTTCCACCGCCGAACCGTTACCATAGCCACCTGCACCCAA
CACTCCGCATGCCGTGGTGGTGCATGCGACGTGGATTTGCACAGAGCAGC
AAGTGGTTAGCCAGGAATGCAAAGGCGAACTTACCAACTGCAGTTGGAGC
CGGAATCGTGCCCGCCCCCGTCAAAATGGGCAGATCCCAGTACGGCCGCC
TGCTCAGCCTGACTAAATCGGAGAAATGGGTGCTGACAGCGGGCATTGGC
TGTCTGGTAGTTTCTTCAGCTATCACCATGTCGGTTCCTCTGTTCCTGGG
CAAGGTCATTGATGTAGTCTTTAATAAATCGGGCATGGATAGCGCAGCCA
TGGCCAAATTGGGCGAGTACTCGGTGCTGCTCTTCGGGATCTTCGTGCTG
GGCGGATTCGCCAACTTTGCCCGCGTCCATCTGTTTGGGAATGCGGCTCT
CCGAATAGTGCGCAGTCTAAGATCCCGGCTATACAGATCTATGCTTATGC
AGGAGGTGGGTTGGTTCGATACCAAGGGCACTGGAGAACTAATAAATCGG
CTGAGCAACGATACCTTAATGGTGGGCACCTCGTTGAGCCAGAACGTATC
GGATGGTCTGCGATCTGTAGCCATGATCGGCGTCGGCACAGGCATGATGA
TCTACACCTCCCCCCAGTTGGCTGCCGTGAGTGCCTTGGTGGTTCCCGCG
ATGGCGGGCATGGCCATCGTGTACGGACGCTACGTAAG

BO04848.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3156-PA 2079 CG3156-RA 1..872 17..888 4360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3156-RA 2345 CG3156-RA 113..984 17..888 4360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 487990..488362 17..389 1865 100 Plus
X 23542271 X 488419..488628 387..596 1050 100 Plus
X 23542271 X 488873..489076 596..799 1020 100 Plus
X 23542271 X 489142..489231 799..888 450 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:13:09 has no hits.

BO04848.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:22 Download gff for BO04848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-PA 1..872 17..888 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:20 Download gff for BO04848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-PA 1..872 17..888 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:53 Download gff for BO04848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 107..984 7..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:27 Download gff for BO04848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 107..984 7..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:27 Download gff for BO04848.5prime
Subject Subject Range Query Range Percent Splice Strand
X 488874..489076 597..799 100 -> Plus
X 487984..488362 7..389 98 -> Plus
X 488422..488628 390..596 100 -> Plus
X 489143..489231 800..888 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:53 Download gff for BO04848.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 382017..382395 7..389 98 -> Plus
arm_X 382455..382661 390..596 100 -> Plus
arm_X 382907..383109 597..799 100 -> Plus
arm_X 383176..383264 800..888 100   Plus

BO04848.complete Sequence

2110 bp assembled on 2008-11-10

GenBank Submission: KX798858

> BO04848.complete
GAAGTTATCAGTCGACATGCTGTTAAACTGTACGAGGCTCACACACCTCT
GCACGACTCTCCGGGTCAGGAAAAGCAGCCAAATAAGGTTGTCCACATCA
TATAATCACCATTTGGGCAGGTGCCTCCACCATCGAACCGCCCGGTCGCT
TCAACACAGCCTTCCACCGCCGAACCGTTACCATAGCCACCTGCACCCAA
CACTCCGCATGCCGTGGTGGTGCATGCGACGTGGATTTGCACAGAGCAGC
AAGTGGTTAGCCAGGAATGCAAAGGCGAACTTACCAACTGCAGTTGGAGC
CGGAATCGTGCCCGCCCCCGTCAAAATGGGCAGATCCCAGTACGGCCGCC
TGCTCAGCCTGACTAAATCGGAGAAATGGGTGCTGACAGCGGGCATTGGC
TGTCTGGTAGTTTCTTCAGCTATCACCATGTCGGTTCCTCTGTTCCTGGG
CAAGGTCATTGATGTAGTCTTTAATAAATCGGGCATGGATAGCGCAGCCA
TGGCCAAATTGGGCGAGTACTCGGTGCTGCTCTTCGGGATCTTCGTGCTG
GGCGGATTCGCCAACTTTGCCCGCGTCCATCTGTTTGGGAATGCGGCTCT
CCGAATAGTGCGCAGTCTAAGATCCCGGCTATACAGATCTATGCTTATGC
AGGAGGTGGGTTGGTTCGATACCAAGGGCACTGGAGAACTAATAAATCGG
CTGAGCAACGATACCTTAATGGTGGGCACCTCGTTGAGCCAGAACGTATC
GGATGGTCTGCGATCTGTAGCCATGATCGGCGTCGGCACAGGCATGATGA
TCTACACCTCCCCCCAGTTGGCTGCCGTGAGTGCCTTGGTGGTTCCCGCG
ATGGCGGGCATGGCCATCGTGTACGGACGCTACGTAAGGCGGATCACCAA
AGTAGAACTAGACAAGTACGCCGAGATTATGAAGTTTGCGGAGGAGCGAT
TTGGTAATGTTAAAACGGTTAAGACCTTCTGCCGAGAACAACAGGAAGTA
GCTGCCTTCGATGGCAAACTGGATGAAGCTCTCCAGATTGGCTACAAAGA
GACACGTGCCAGAGCTATTTTCTTTGGATTGACTGGCTTCTGTGGCAACT
TCATCATTATTTCAGTGCTGTATTATGGAGGAACCTTGGTATTACAAGAC
TCGCTGACGATTGGAGCCCTCACAGCCTTCATGCTGTACGCCGGTTATGT
GGCCATCTCAATGAATGGGTTGTCCAACTTCTATAGCCAACTGAACAAAG
GCATTGGAGCCTCGGAGCGTATTTGGGAGATCCTGGACAGGGAGTGTTCT
ATACCCATTGACAAAGGTGTCGTGCCGTTGGAGAAGCCGGTGGGCGAAGT
TGGATTCCAGAATGTATTCTTTACGTTTCCAACTAGACCTGAATCGGCCG
TCCTCACCGACTTTTCGCTAAATTTGATGCCGGGAACAACCACAGCGGTA
GTGGGTCGTTCAGGATCTGGAAAGACGACGATAGCTCTGCTAATGCTCCG
ACTATATGACCCCCAAGGGGGAACAGTGCATTTGGATGGCATAGATTTGC
GAACAGTGAATCCACAGTGGTTGCGAAATAACATTGGTGCCGTCAGTCAG
GAGCCGGTGCTCTTCTCGTGCTCCATTCGAGAGAATATTCTTTATGGCGC
TAATCCTGGCGAAACACCGAGCCCGGAGCGACTGCAGCAGGTTATTGAAG
ATGCAAATGTCAGCCAGTTCACCGACCAACTGCCGGATGGACTAGACACG
CTCGTCGGCCAACGGGGAATGATGCTCAGTGGCGGACAAAAGCAAAGAGT
AGCCATTGCCAGGGCTCTAATTAAGAACCCCGCTATCCTGATTTTGGATG
AAGCTACCAGTGCGTTGGACGCCGTTTCGGAAAATCTGGTGCAGAATGCC
TTAGACAATCTTATCCAGGGACGCACCGTACTGACAATTGCCCATCGACT
CAGTACAATTCGAAATGCGGATCAAATCGCCGTCTTAAGCGACGGAAAAA
TTGTAGAGCAGGGCAGCTACAACGAGCTTATGGGCATCCAGGAGGGCGTC
TTCCGGGAACTGGTGGCCAGCCAAGCGTTCGGTAGCCGAAACGCAAGCTT
TCTAGACCAT

BO04848.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3156-RA 2079 CG3156-PA 1..2076 17..2092 10365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3156-RA 2345 CG3156-RA 113..2188 17..2092 10365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 489484..490228 1081..1825 3725 100 Plus
X 23542271 X 487990..488362 17..389 1865 100 Plus
X 23542271 X 489142..489424 799..1081 1415 100 Plus
X 23542271 X 490300..490568 1824..2092 1330 99.6 Plus
X 23542271 X 488419..488628 387..596 1050 100 Plus
X 23542271 X 488873..489076 596..799 1020 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:07:48 has no hits.

BO04848.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:15 Download gff for BO04848.complete
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 46..2130 7..2096 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:41 Download gff for BO04848.complete
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 113..2188 17..2094 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:48 Download gff for BO04848.complete
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 52..2127 17..2094 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:24 Download gff for BO04848.complete
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 113..2188 17..2094 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:24 Download gff for BO04848.complete
Subject Subject Range Query Range Percent Splice Strand
X 489143..489424 800..1081 100 -> Plus
X 490302..490568 1826..2094 98   Plus
X 487990..488362 17..389 100 -> Plus
X 488422..488628 390..596 100 -> Plus
X 488874..489076 597..799 100 -> Plus
X 489485..490228 1082..1825 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:41 Download gff for BO04848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 384335..384601 1826..2094 98   Plus
arm_X 382023..382395 17..389 100 -> Plus
arm_X 382455..382661 390..596 100 -> Plus
arm_X 382907..383109 597..799 100 -> Plus
arm_X 383176..383457 800..1081 100 -> Plus
arm_X 383518..384261 1082..1825 100 -> Plus

BO04848.pep Sequence

Translation from 16 to 2110

> BO04848.pep
MLLNCTRLTHLCTTLRVRKSSQIRLSTSYNHHLGRCLHHRTARSLQHSLP
PPNRYHSHLHPTLRMPWWCMRRGFAQSSKWLARNAKANLPTAVGAGIVPA
PVKMGRSQYGRLLSLTKSEKWVLTAGIGCLVVSSAITMSVPLFLGKVIDV
VFNKSGMDSAAMAKLGEYSVLLFGIFVLGGFANFARVHLFGNAALRIVRS
LRSRLYRSMLMQEVGWFDTKGTGELINRLSNDTLMVGTSLSQNVSDGLRS
VAMIGVGTGMMIYTSPQLAAVSALVVPAMAGMAIVYGRYVRRITKVELDK
YAEIMKFAEERFGNVKTVKTFCREQQEVAAFDGKLDEALQIGYKETRARA
IFFGLTGFCGNFIIISVLYYGGTLVLQDSLTIGALTAFMLYAGYVAISMN
GLSNFYSQLNKGIGASERIWEILDRECSIPIDKGVVPLEKPVGEVGFQNV
FFTFPTRPESAVLTDFSLNLMPGTTTAVVGRSGSGKTTIALLMLRLYDPQ
GGTVHLDGIDLRTVNPQWLRNNIGAVSQEPVLFSCSIRENILYGANPGET
PSPERLQQVIEDANVSQFTDQLPDGLDTLVGQRGMMLSGGQKQRVAIARA
LIKNPAILILDEATSALDAVSENLVQNALDNLIQGRTVLTIAHRLSTIRN
ADQIAVLSDGKIVEQGSYNELMGIQEGVFRELVASQAFGSRNASFLDH

BO04848.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3156-PA 692 CG3156-PA 1..692 1..692 3522 100 Plus
CG1824-PA 761 CG1824-PA 84..700 67..686 987 37 Plus
Mdr50-PA 1313 CG8523-PA 735..1310 112..687 758 34.5 Plus
Mdr49-PB 1101 CG3879-PB 515..1088 104..676 756 32.3 Plus
Mdr49-PA 1302 CG3879-PA 716..1289 104..676 756 32.3 Plus
Mdr50-PA 1313 CG8523-PA 81..668 116..686 745 32.5 Plus
Mdr49-PB 1101 CG3879-PB 16..436 267..684 688 38.1 Plus