Clone Sequence Records
BO04848.3prime Sequence
869 bp (815 high quality bases) assembled on 2005-12-02
> BO04848.3prime
ATGGTCTAGAAAGCTTGCGTTTCGGCTACCGAACGCTTGGCTGGCCACCA
GTTCCCGGAAGACGCCCTCCTGGATGCCCATAAGCTCGTTGTAGCTGCCC
TGCTCTACAATTTTTCCGTCGCTTAAGACGGCGATTTGATCCGCATTTCG
AATTGTACTGAGTCGATGGGCAATTGTCAGTACGGTGCGTCCCTGGATAA
GATTGTCTAAGGCATTCTGCACCAGATTTTCCGAAACGGCGTCCAACGCA
CTGGTAGCTTCATCCAAAATCAGGATAGCGGGGTTCTTAATTAGAGCCCT
GGCAATGGCTACTCTTTGCTTTTGTCCGCCACTGAGCATCATTCCCCGTT
GGCCGACGAGCGTGTCTAGTCCATCCGGCAGTTGGTCGGTGAACTGGCTG
ACATTTGCATCTTCAATAACCTGCTGCAGTCGCTCCGGGCTCGGTGTTTC
GCCAGGATTAGCGCCATAAAGAATATTCTCTCGAATGGAGCACGAGAAGA
GCACCGGCTCCTGACTGACGGCACCAATGTTATTTCGCAACCACTGTGGA
TTCACTGTTCGCAAATCTATGCCATCCAAATGCACTGTTCCCCCTTGGGG
GTCATATAGTCGGAGCATTAGCAGAGCTATCGTCGTCTTTCCAGATCCTG
AACGACCCACTACCGCTGTGGTTGTTCCCGGCATCAAATTTAGCGAAAAG
TCGGTGAGGACGGCCGATTCAGGTCTAGTTGGAAACGTAAAGAATACATT
CTGGAATCCAACTTCGCCCACCGGCTTCTCCAACGGCACGACACCTTTGT
CAATGGGTATAGAACACTCCCTGTCCAGGATCTCCAAATACGCTCCGAGG
CTCCAATGCCTTTGTTCAG
BO04848.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3156-PA | 2079 | CG3156-RA | 1260..2076 | 835..19 | 4060 | 99.8 | Minus |
CG3156-PA | 2079 | CG3156-RA | 1225..1260 | 869..834 | 180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3156-RA | 2345 | CG3156-RA | 1337..2188 | 869..19 | 4220 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 489644..490228 | 869..286 | 2875 | 99.8 | Minus |
X | 23542271 | X | 490300..490568 | 287..19 | 1330 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:29:13 has no hits.
BO04848.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:21 Download gff for
BO04848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3156-PA | 1225..2079 | 15..869 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:19 Download gff for
BO04848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3156-PA | 1225..2079 | 15..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:30 Download gff for
BO04848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3156-RA | 1337..2191 | 15..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:01 Download gff for
BO04848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3156-RA | 1337..2191 | 15..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:01 Download gff for
BO04848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 489644..490228 | 286..869 | 99 | -> | Minus |
X | 490302..490571 | 15..285 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:30 Download gff for
BO04848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 383677..384261 | 286..869 | 99 | -> | Minus |
arm_X | 384335..384604 | 15..285 | 98 | | Minus |
BO04848.5prime Sequence
888 bp (881 high quality bases) assembled on 2005-12-02
> BO04848.5prime
GAAGTTATCAGTCGACATGCTGTTAAACTGTACGAGGCTCACACACCTCT
GCACGACTCTCCGGGTCAGGAAAAGCAGCCAAATAAGGTTGTCCACATCA
TATAATCACCATTTGGGCAGGTGCCTCCACCATCGAACCGCCCGGTCGCT
TCAACACAGCCTTCCACCGCCGAACCGTTACCATAGCCACCTGCACCCAA
CACTCCGCATGCCGTGGTGGTGCATGCGACGTGGATTTGCACAGAGCAGC
AAGTGGTTAGCCAGGAATGCAAAGGCGAACTTACCAACTGCAGTTGGAGC
CGGAATCGTGCCCGCCCCCGTCAAAATGGGCAGATCCCAGTACGGCCGCC
TGCTCAGCCTGACTAAATCGGAGAAATGGGTGCTGACAGCGGGCATTGGC
TGTCTGGTAGTTTCTTCAGCTATCACCATGTCGGTTCCTCTGTTCCTGGG
CAAGGTCATTGATGTAGTCTTTAATAAATCGGGCATGGATAGCGCAGCCA
TGGCCAAATTGGGCGAGTACTCGGTGCTGCTCTTCGGGATCTTCGTGCTG
GGCGGATTCGCCAACTTTGCCCGCGTCCATCTGTTTGGGAATGCGGCTCT
CCGAATAGTGCGCAGTCTAAGATCCCGGCTATACAGATCTATGCTTATGC
AGGAGGTGGGTTGGTTCGATACCAAGGGCACTGGAGAACTAATAAATCGG
CTGAGCAACGATACCTTAATGGTGGGCACCTCGTTGAGCCAGAACGTATC
GGATGGTCTGCGATCTGTAGCCATGATCGGCGTCGGCACAGGCATGATGA
TCTACACCTCCCCCCAGTTGGCTGCCGTGAGTGCCTTGGTGGTTCCCGCG
ATGGCGGGCATGGCCATCGTGTACGGACGCTACGTAAG
BO04848.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3156-PA | 2079 | CG3156-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3156-RA | 2345 | CG3156-RA | 113..984 | 17..888 | 4360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 487990..488362 | 17..389 | 1865 | 100 | Plus |
X | 23542271 | X | 488419..488628 | 387..596 | 1050 | 100 | Plus |
X | 23542271 | X | 488873..489076 | 596..799 | 1020 | 100 | Plus |
X | 23542271 | X | 489142..489231 | 799..888 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:13:09 has no hits.
BO04848.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:22 Download gff for
BO04848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3156-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:20 Download gff for
BO04848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3156-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:53 Download gff for
BO04848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3156-RA | 107..984 | 7..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:27 Download gff for
BO04848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3156-RA | 107..984 | 7..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:27 Download gff for
BO04848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 488874..489076 | 597..799 | 100 | -> | Plus |
X | 487984..488362 | 7..389 | 98 | -> | Plus |
X | 488422..488628 | 390..596 | 100 | -> | Plus |
X | 489143..489231 | 800..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:53 Download gff for
BO04848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 382017..382395 | 7..389 | 98 | -> | Plus |
arm_X | 382455..382661 | 390..596 | 100 | -> | Plus |
arm_X | 382907..383109 | 597..799 | 100 | -> | Plus |
arm_X | 383176..383264 | 800..888 | 100 | | Plus |
BO04848.complete Sequence
2110 bp assembled on 2008-11-10
GenBank Submission: KX798858
> BO04848.complete
GAAGTTATCAGTCGACATGCTGTTAAACTGTACGAGGCTCACACACCTCT
GCACGACTCTCCGGGTCAGGAAAAGCAGCCAAATAAGGTTGTCCACATCA
TATAATCACCATTTGGGCAGGTGCCTCCACCATCGAACCGCCCGGTCGCT
TCAACACAGCCTTCCACCGCCGAACCGTTACCATAGCCACCTGCACCCAA
CACTCCGCATGCCGTGGTGGTGCATGCGACGTGGATTTGCACAGAGCAGC
AAGTGGTTAGCCAGGAATGCAAAGGCGAACTTACCAACTGCAGTTGGAGC
CGGAATCGTGCCCGCCCCCGTCAAAATGGGCAGATCCCAGTACGGCCGCC
TGCTCAGCCTGACTAAATCGGAGAAATGGGTGCTGACAGCGGGCATTGGC
TGTCTGGTAGTTTCTTCAGCTATCACCATGTCGGTTCCTCTGTTCCTGGG
CAAGGTCATTGATGTAGTCTTTAATAAATCGGGCATGGATAGCGCAGCCA
TGGCCAAATTGGGCGAGTACTCGGTGCTGCTCTTCGGGATCTTCGTGCTG
GGCGGATTCGCCAACTTTGCCCGCGTCCATCTGTTTGGGAATGCGGCTCT
CCGAATAGTGCGCAGTCTAAGATCCCGGCTATACAGATCTATGCTTATGC
AGGAGGTGGGTTGGTTCGATACCAAGGGCACTGGAGAACTAATAAATCGG
CTGAGCAACGATACCTTAATGGTGGGCACCTCGTTGAGCCAGAACGTATC
GGATGGTCTGCGATCTGTAGCCATGATCGGCGTCGGCACAGGCATGATGA
TCTACACCTCCCCCCAGTTGGCTGCCGTGAGTGCCTTGGTGGTTCCCGCG
ATGGCGGGCATGGCCATCGTGTACGGACGCTACGTAAGGCGGATCACCAA
AGTAGAACTAGACAAGTACGCCGAGATTATGAAGTTTGCGGAGGAGCGAT
TTGGTAATGTTAAAACGGTTAAGACCTTCTGCCGAGAACAACAGGAAGTA
GCTGCCTTCGATGGCAAACTGGATGAAGCTCTCCAGATTGGCTACAAAGA
GACACGTGCCAGAGCTATTTTCTTTGGATTGACTGGCTTCTGTGGCAACT
TCATCATTATTTCAGTGCTGTATTATGGAGGAACCTTGGTATTACAAGAC
TCGCTGACGATTGGAGCCCTCACAGCCTTCATGCTGTACGCCGGTTATGT
GGCCATCTCAATGAATGGGTTGTCCAACTTCTATAGCCAACTGAACAAAG
GCATTGGAGCCTCGGAGCGTATTTGGGAGATCCTGGACAGGGAGTGTTCT
ATACCCATTGACAAAGGTGTCGTGCCGTTGGAGAAGCCGGTGGGCGAAGT
TGGATTCCAGAATGTATTCTTTACGTTTCCAACTAGACCTGAATCGGCCG
TCCTCACCGACTTTTCGCTAAATTTGATGCCGGGAACAACCACAGCGGTA
GTGGGTCGTTCAGGATCTGGAAAGACGACGATAGCTCTGCTAATGCTCCG
ACTATATGACCCCCAAGGGGGAACAGTGCATTTGGATGGCATAGATTTGC
GAACAGTGAATCCACAGTGGTTGCGAAATAACATTGGTGCCGTCAGTCAG
GAGCCGGTGCTCTTCTCGTGCTCCATTCGAGAGAATATTCTTTATGGCGC
TAATCCTGGCGAAACACCGAGCCCGGAGCGACTGCAGCAGGTTATTGAAG
ATGCAAATGTCAGCCAGTTCACCGACCAACTGCCGGATGGACTAGACACG
CTCGTCGGCCAACGGGGAATGATGCTCAGTGGCGGACAAAAGCAAAGAGT
AGCCATTGCCAGGGCTCTAATTAAGAACCCCGCTATCCTGATTTTGGATG
AAGCTACCAGTGCGTTGGACGCCGTTTCGGAAAATCTGGTGCAGAATGCC
TTAGACAATCTTATCCAGGGACGCACCGTACTGACAATTGCCCATCGACT
CAGTACAATTCGAAATGCGGATCAAATCGCCGTCTTAAGCGACGGAAAAA
TTGTAGAGCAGGGCAGCTACAACGAGCTTATGGGCATCCAGGAGGGCGTC
TTCCGGGAACTGGTGGCCAGCCAAGCGTTCGGTAGCCGAAACGCAAGCTT
TCTAGACCAT
BO04848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3156-RA | 2079 | CG3156-PA | 1..2076 | 17..2092 | 10365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3156-RA | 2345 | CG3156-RA | 113..2188 | 17..2092 | 10365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 489484..490228 | 1081..1825 | 3725 | 100 | Plus |
X | 23542271 | X | 487990..488362 | 17..389 | 1865 | 100 | Plus |
X | 23542271 | X | 489142..489424 | 799..1081 | 1415 | 100 | Plus |
X | 23542271 | X | 490300..490568 | 1824..2092 | 1330 | 99.6 | Plus |
X | 23542271 | X | 488419..488628 | 387..596 | 1050 | 100 | Plus |
X | 23542271 | X | 488873..489076 | 596..799 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:07:48 has no hits.
BO04848.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:15 Download gff for
BO04848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3156-RA | 46..2130 | 7..2096 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:41 Download gff for
BO04848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3156-RA | 113..2188 | 17..2094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:48 Download gff for
BO04848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3156-RA | 52..2127 | 17..2094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:24 Download gff for
BO04848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3156-RA | 113..2188 | 17..2094 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:24 Download gff for
BO04848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 489143..489424 | 800..1081 | 100 | -> | Plus |
X | 490302..490568 | 1826..2094 | 98 | | Plus |
X | 487990..488362 | 17..389 | 100 | -> | Plus |
X | 488422..488628 | 390..596 | 100 | -> | Plus |
X | 488874..489076 | 597..799 | 100 | -> | Plus |
X | 489485..490228 | 1082..1825 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:41 Download gff for
BO04848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 384335..384601 | 1826..2094 | 98 | | Plus |
arm_X | 382023..382395 | 17..389 | 100 | -> | Plus |
arm_X | 382455..382661 | 390..596 | 100 | -> | Plus |
arm_X | 382907..383109 | 597..799 | 100 | -> | Plus |
arm_X | 383176..383457 | 800..1081 | 100 | -> | Plus |
arm_X | 383518..384261 | 1082..1825 | 100 | -> | Plus |
BO04848.pep Sequence
Translation from 16 to 2110
> BO04848.pep
MLLNCTRLTHLCTTLRVRKSSQIRLSTSYNHHLGRCLHHRTARSLQHSLP
PPNRYHSHLHPTLRMPWWCMRRGFAQSSKWLARNAKANLPTAVGAGIVPA
PVKMGRSQYGRLLSLTKSEKWVLTAGIGCLVVSSAITMSVPLFLGKVIDV
VFNKSGMDSAAMAKLGEYSVLLFGIFVLGGFANFARVHLFGNAALRIVRS
LRSRLYRSMLMQEVGWFDTKGTGELINRLSNDTLMVGTSLSQNVSDGLRS
VAMIGVGTGMMIYTSPQLAAVSALVVPAMAGMAIVYGRYVRRITKVELDK
YAEIMKFAEERFGNVKTVKTFCREQQEVAAFDGKLDEALQIGYKETRARA
IFFGLTGFCGNFIIISVLYYGGTLVLQDSLTIGALTAFMLYAGYVAISMN
GLSNFYSQLNKGIGASERIWEILDRECSIPIDKGVVPLEKPVGEVGFQNV
FFTFPTRPESAVLTDFSLNLMPGTTTAVVGRSGSGKTTIALLMLRLYDPQ
GGTVHLDGIDLRTVNPQWLRNNIGAVSQEPVLFSCSIRENILYGANPGET
PSPERLQQVIEDANVSQFTDQLPDGLDTLVGQRGMMLSGGQKQRVAIARA
LIKNPAILILDEATSALDAVSENLVQNALDNLIQGRTVLTIAHRLSTIRN
ADQIAVLSDGKIVEQGSYNELMGIQEGVFRELVASQAFGSRNASFLDH
BO04848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3156-PA | 692 | CG3156-PA | 1..692 | 1..692 | 3522 | 100 | Plus |
CG1824-PA | 761 | CG1824-PA | 84..700 | 67..686 | 987 | 37 | Plus |
Mdr50-PA | 1313 | CG8523-PA | 735..1310 | 112..687 | 758 | 34.5 | Plus |
Mdr49-PB | 1101 | CG3879-PB | 515..1088 | 104..676 | 756 | 32.3 | Plus |
Mdr49-PA | 1302 | CG3879-PA | 716..1289 | 104..676 | 756 | 32.3 | Plus |
Mdr50-PA | 1313 | CG8523-PA | 81..668 | 116..686 | 745 | 32.5 | Plus |
Mdr49-PB | 1101 | CG3879-PB | 16..436 | 267..684 | 688 | 38.1 | Plus |