Clone Sequence Records
BO04849.3prime Sequence
935 bp (802 high quality bases) assembled on 2005-12-02
> BO04849.3prime
ATGGTCTAGAAAGCTTGCGGCGGCCGTCGTAACCTTCGGCTGTCCGCCAG
GTCCGGTTGCTCCTGCTCCTGCTCCTGCTCCCACTGCCATGCCGCCAACT
CCCACTCCTGCATCTGCGCCCGCCTCGAGGGATGCGGGTGCCGCCGAGAT
CTCGTCCAGCTGCTGTTGGAGCAGCTGCTCCTCCACCTGGCCGTCGCCCA
TGATGCTGCTGCTGCTGGTGGTTGTGGCGCCGCTGCCGGTTTGGCTGGTG
CGCAGCTCCGGCGGCAGATAGATTTTGACCACGCTGGTGATCTTCACCCG
ACAGTTGGGACAGTTGCTGCATCGTGCAGCGCACTGGGCGCAGGCGATGA
CGTGACAGCACGGATTGAACACTGTGTTGATGGCGCGGTCCATGCAGATC
TTGCACTGCATGGCCTCCGAGATGCGCGTGTCCACGCAACGCTCAATCGC
CGCCTCACGCGCCTCCTTCTCGCGTATGGCCAAATCTATCTTGCCGGCCA
TGGAGCCGCCGGCACCAGTCGTCAGGGCCATGGCCCATGGGCTGACGCCC
GGCTCGCCGACGGCAGAGGCGCCCAATCCTCCAGCGACAGCAGAGCATCC
CTCGGCTCCCTCCGCCACCAGATCGCCGCCCCGCTCGTGGAGAGTCCTCC
TCGCCTGGTCGTGCACCTCGCGACACGTGTGCTGAATGTCGAAGACATAG
CGCTTGCCCAGCTCCGTATTCTCCATGAACATGGAGGCGATGGTGCCCTT
GAGATCCCGGGTAAACTGATTGGTCACCACTCCGCGCACCTTGTCGCACA
CGTAGAAGGCGTGGCGCTCCGTGATGGAGCGGTACAGGCCCGCGGCGATC
GGCTGCTTGGGCAGCTTGATCTCCAGCTCCTTGCGATCGTTGTGGTCATC
CACGTACTCCAAACTGAAAGTGCGACGCAGCGACT
BO04849.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12489-PA | 2031 | Dnr1-RA | 1112..2028 | 935..19 | 4535 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnr1-RB | 3553 | CG12489-RB | 1666..2582 | 935..19 | 4555 | 99.8 | Minus |
| dnr1-RA | 3194 | CG12489-RA | 1666..2582 | 935..19 | 4555 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22564494..22565106 | 323..935 | 3035 | 99.7 | Plus |
| 2R | 25286936 | 2R | 22564123..22564427 | 19..323 | 1525 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 16:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6887 | 257..131 | 197 | 64.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6955 | 320..126 | 186 | 58.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..6862 | 278..129 | 174 | 61.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6922 | 250..54 | 166 | 55.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6900 | 320..161 | 165 | 59.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2511 | 320..159 | 159 | 59.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6901 | 249..57 | 158 | 56 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2406 | 251..159 | 156 | 64.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2403 | 251..159 | 148 | 65.3 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 111..214 | 261..160 | 146 | 61.5 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9141..9244 | 261..160 | 146 | 61.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2514 | 319..202 | 138 | 59.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1144 | 240..151 | 134 | 64.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2465 | 269..151 | 131 | 60.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2901 | 250..159 | 131 | 65.6 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1080..1157 | 269..193 | 126 | 64.1 | Minus |
| TART-A | 13424 | TART-A 13424bp | 11032..11112 | 240..160 | 126 | 61.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1168 | 277..185 | 122 | 61.7 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1040 | 225..155 | 121 | 67.1 | Minus |
| TART-A | 13424 | TART-A 13424bp | 11281..11352 | 233..161 | 119 | 64.4 | Minus |
| TART-A | 13424 | TART-A 13424bp | 103..174 | 233..161 | 119 | 64.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1573 | 250..201 | 115 | 70 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2647 | 251..201 | 111 | 68.6 | Minus |
| Rt1c | 5443 | Rt1c RT1C 5443bp | 156..200 | 498..539 | 110 | 75.6 | Plus |
BO04849.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:23 Download gff for
BO04849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dnr1-PA | 1112..2031 | 18..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:21 Download gff for
BO04849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12489-PA | 1112..2031 | 18..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:43:22 Download gff for
BO04849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnr1-RA | 1666..2582 | 19..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:21 Download gff for
BO04849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnr1-RA | 1666..2582 | 19..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:21 Download gff for
BO04849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22564123..22564426 | 19..322 | 100 | <- | Plus |
| 2R | 22564494..22565106 | 323..935 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:43:22 Download gff for
BO04849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18451628..18451931 | 19..322 | 100 | <- | Plus |
| arm_2R | 18451999..18452611 | 323..935 | 99 | | Plus |
BO04849.5prime Sequence
890 bp (800 high quality bases) assembled on 2005-12-02
> BO04849.5prime
GAAGTTATCAGTCGACATGTGGTGCATTGTCAACCTGCCCAACGGCACCC
AACAAGCCGTCAAGTGGGATCCCAAAGCCAATGGTCAGGAGTGTCTGGAG
AAGGTCTGTCGCGCAATGAACATCATCTGCGAGATGGAGTACTTCGGCCT
GGAGCACTGGACGCCCAACCAGAAGGAGTCGCAGACGCGCCAGTGGATCA
ATCTGCGCAATCGGCTATCCGGCGACAGTGGCAGCAGCGGCAGCGGCATC
CAGCTGATGCTGGCGCTGCGGGTCAAGTTCTGGGTGCCGGTGCACTTCAT
CCTGCAGGAGAGCGTGCGTAATTTGTTCTACATGCAGGCCAGGCGGGATC
TGCTCGAGGGACGGCTCACTGCGCCGGACTGGAGTGGAGCGGCCAAGTTG
GCGGCGCTGCTCTGCCAGGCGGATGGTCTGCGATTCAATGAGTCGTCGCT
GAAGGCCGACTGCCCGATGCGAATGAGGCGGGAGTTGGCGCAACAGCAGC
AGCAGCAACAGCAGCAGGCGCAGCAGCATAGGTTGGAGCAGCAGCGCAAG
GAGAAGGAGCATGTGCTGAGCTTCAAGAAGCGCCGCCTGTCCAAGCAGAA
GTCCATGGAGCACATCGAGGTCTGTACGCTGCCAGCGGCAAGCACCACCA
GCTGCAGTCTCCAGCCCTCGCCATCCGCATCCGCCTCAGCATCTGCATCC
GCCTCAGCATCTGCATCCGCCTCCACATCCGCCTGCTCGCAAACCCACTC
GAACAGCAGCTCGAGCAGCCCCAGCAACAGCAGCAGCCAGACGGGCCTGG
ACGAGCGACTGGCCAGCAATCCGCTCCGCGTCTACGAGGAGTACTTCATG
CAGCCGAGCTGCGAGGGTGAGCCACCGGCGGACTATCTGC
BO04849.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12489-PA | 2031 | Dnr1-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnr1-RB | 3553 | CG12489-RB | 555..1428 | 17..890 | 4370 | 100 | Plus |
| dnr1-RA | 3194 | CG12489-RA | 555..1428 | 17..890 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22565903..22566691 | 890..102 | 3945 | 100 | Minus |
| 2R | 25286936 | 2R | 22592322..22592410 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:32:26 has no hits.
BO04849.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:24 Download gff for
BO04849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dnr1-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:22 Download gff for
BO04849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12489-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:36 Download gff for
BO04849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnr1-RA | 555..1428 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:54 Download gff for
BO04849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnr1-RA | 555..1428 | 17..890 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:54 Download gff for
BO04849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22565903..22566689 | 104..890 | 100 | <- | Minus |
| 2R | 22592324..22592410 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:36 Download gff for
BO04849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18479829..18479915 | 17..103 | 100 | | Minus |
| arm_2R | 18453408..18454194 | 104..890 | 100 | <- | Minus |
BO04849.complete Sequence
2062 bp assembled on 2008-08-14
GenBank Submission: FJ629894
> BO04849.complete
GAAGTTATCAGTCGACATGTGGTGCATTGTCAACCTGCCCAACGGCACCC
AACAAGCCGTCAAGTGGGATCCCAAAGCCAATGGTCAGGAGTGTCTGGAG
AAGGTCTGTCGCGCAATGAACATCATCTGCGAGATGGAGTACTTCGGCCT
GGAGCACTGGACGCCCAACCAGAAGGAGTCGCAGACGCGCCAGTGGATCA
ATCTGCGCAATCGGCTATCCGGCGACAGTGGCAGCAGCGGCAGCGGCATC
CAGCTGATGCTGGCGCTGCGGGTCAAGTTCTGGGTGCCGGTGCACTTCAT
CCTGCAGGAGAGCGTGCGTAATTTGTTCTACATGCAGGCCAGGCGGGATC
TGCTCGAGGGACGGCTCACTGCGCCGGACTGGAGTGGAGCGGCCAAGTTG
GCGGCGCTGCTCTGCCAGGCGGATGGTCTGCGATTCAATGAGTCGTCGCT
GAAGGCCGACTGCCCGATGCGAATGAGGCGGGAGTTGGCGCAACAGCAGC
AGCAGCAACAGCAGCAGGCGCAGCAGCATAGGTTGGAGCAGCAGCGCAAG
GAGAAGGAGCATGTGCTGAGCTTCAAGAAGCGCCGCCTGTCCAAGCAGAA
GTCCATGGAGCACATCGAGGTCTGTACGCTGCCAGCGGCAAGCACCACCA
GCTGCAGTCTCCAGCCCTCGCCATCCGCATCCGCCTCAGCATCTGCATCC
GCCTCAGCATCTGCATCCGCCTCCACATCCGCCTGCTCGCAAACCCACTC
GAACAGCAGCTCGAGCAGCCCCAGCAACAGCAGCAGCCAGACGGGCCTGG
ACGAGCGACTGGCCAGCAATCCGCTCCGCGTCTACGAGGAGTACTTCATG
CAGCCGAGCTGCGAGGGTGAGCCACCGGCGGACTATCTGCGCCAAATAGC
CGTGGAGCACGGCAAGCTGGCCAAGCTGCAGATGAGCCTCAAGACGGCCA
AGTACTGGCTGCTCAAGTCCATCCAGGATCTCGAAGGCTACGGCGAGGAG
CTCTTTAGCGGCGTGACCACCAACGAGAGTGCCACGCGCTGCGACATTGC
GGTGGGCGCCCATGGCATCACCGTCTGCCGGGGGGGCGAGAAACAGAGCA
TCCCCTTTGGCGCCATCGCTGCGGCCAAGTCGCTGCGTCGCACTTTCAAG
TTGGAGTACGTGGATGACCACAACGATCGCAAGGAGCTGGAGATCAAGCT
GCCCAAGCAGCCGATCGCCGCGGGCCTGTACCGCTCCATCACGGAGCGCC
ACGCCTTCTACGTGTGCGACAAGGTGCGCGGAGTGGTGACCAATCAGTTT
ACCCGGGATCTCAAGGGCACCATCGCCTCCATGTTCATGGAGAATACGGA
GCTGGGCAAGCGCTATGTCTTCGACATTCAGCACACGTGTCGCGAGGTGC
ACGACCAGGCGAGGAGGACTCTCCACGAGCGGGGCGGCGATCTGGTGGCG
GAGGGAGCCGAGGGATGCTCTGCTGTCGCTGGAGGATTGGGCGCCTCTGC
CGTCGGCGAGCCGGGCGTCAGCCCATGGGCCATGGCCCTGACGACTGGTG
CCGGCGGCTCCATGGCCGGCAAGATAGATTTGGCCATACGCGAGAAGGAG
GCGCGTGAGGCGGCGATTGAGCGTTGCGTGGACACGCGCATCTCGGAGGC
CATGCAGTGCAAGATCTGCATGGACCGCGCCATCAACACAGTGTTCAATC
CGTGCTGTCACGTCATCGCCTGCGCCCAGTGCGCTGCACGATGCAGCAAC
TGTCCCAACTGTCGGGTGAAGATCACCAGCGTGGTCAAAATCTATCTGCC
GCCGGAGCTGCGCACCAGCCAAACCGGCAGCGGCGCCACAACCACCAGCA
GCAGCAGCATCATGGGCGACGGCCAGGTGGAGGAGCAGCTGCTCCAACAG
CAGCTGGACGAGATCTCGGCGGCACCCGCATCCCTCGAGGCGGGCGCAGA
TGCAGGAGTGGGAGTTGGCGGCATGGCAGTGGGAGCAGGAGCAGGAGCAG
GAGCAACCGGACCTGGCGGACAGCCGAAGGTTACGACGGCCGCCGCAAGC
TTTCTAGACCAT
BO04849.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnr1-RB | 2091 | CG12489-PB | 1..2028 | 17..2044 | 10140 | 100 | Plus |
| dnr1-RA | 2031 | CG12489-PA | 1..2028 | 17..2044 | 10140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:58:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnr1-RB | 3553 | CG12489-RB | 555..2582 | 17..2044 | 10140 | 100 | Plus |
| dnr1-RA | 3194 | CG12489-RA | 555..2582 | 17..2044 | 10140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22565695..22566691 | 1098..102 | 4985 | 100 | Minus |
| 2R | 25286936 | 2R | 22564494..22565137 | 1740..1097 | 3220 | 100 | Minus |
| 2R | 25286936 | 2R | 22564123..22564427 | 2044..1740 | 1525 | 100 | Minus |
| 2R | 25286936 | 2R | 22592322..22592410 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6887 | 1806..1932 | 197 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6955 | 1743..1937 | 186 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..6862 | 1785..1934 | 174 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6922 | 1813..2009 | 166 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6900 | 1743..1902 | 165 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2511 | 1743..1904 | 159 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6901 | 1814..2006 | 158 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2406 | 1812..1904 | 156 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2403 | 1812..1904 | 148 | 65.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9141..9244 | 1802..1903 | 146 | 61.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 111..214 | 1802..1903 | 146 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2514 | 1744..1861 | 138 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2465 | 1794..1912 | 131 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2901 | 1813..1904 | 131 | 65.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1080..1157 | 1794..1870 | 126 | 64.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11032..11112 | 1823..1903 | 126 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1168 | 1786..1878 | 122 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1573 | 1813..1862 | 115 | 70 | Plus |
BO04849.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:08 Download gff for
BO04849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dnr1-RA | 559..2586 | 17..2044 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:30 Download gff for
BO04849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnr1-RA | 555..2582 | 17..2046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:28 Download gff for
BO04849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dnr1-RA | 559..2586 | 17..2046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:24 Download gff for
BO04849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnr1-RA | 555..2582 | 17..2046 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:24 Download gff for
BO04849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22564121..22564426 | 1741..2046 | 99 | <- | Minus |
| 2R | 22564494..22565135 | 1099..1740 | 100 | <- | Minus |
| 2R | 22565695..22566689 | 104..1098 | 100 | <- | Minus |
| 2R | 22592324..22592410 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:30 Download gff for
BO04849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18451626..18451931 | 1741..2046 | 99 | <- | Minus |
| arm_2R | 18451999..18452640 | 1099..1740 | 100 | <- | Minus |
| arm_2R | 18453200..18454194 | 104..1098 | 100 | <- | Minus |
| arm_2R | 18479829..18479915 | 17..103 | 100 | | Minus |
BO04849.pep Sequence
Translation from 16 to 2062
> BO04849.pep
MWCIVNLPNGTQQAVKWDPKANGQECLEKVCRAMNIICEMEYFGLEHWTP
NQKESQTRQWINLRNRLSGDSGSSGSGIQLMLALRVKFWVPVHFILQESV
RNLFYMQARRDLLEGRLTAPDWSGAAKLAALLCQADGLRFNESSLKADCP
MRMRRELAQQQQQQQQQAQQHRLEQQRKEKEHVLSFKKRRLSKQKSMEHI
EVCTLPAASTTSCSLQPSPSASASASASASASASASTSACSQTHSNSSSS
SPSNSSSQTGLDERLASNPLRVYEEYFMQPSCEGEPPADYLRQIAVEHGK
LAKLQMSLKTAKYWLLKSIQDLEGYGEELFSGVTTNESATRCDIAVGAHG
ITVCRGGEKQSIPFGAIAAAKSLRRTFKLEYVDDHNDRKELEIKLPKQPI
AAGLYRSITERHAFYVCDKVRGVVTNQFTRDLKGTIASMFMENTELGKRY
VFDIQHTCREVHDQARRTLHERGGDLVAEGAEGCSAVAGGLGASAVGEPG
VSPWAMALTTGAGGSMAGKIDLAIREKEAREAAIERCVDTRISEAMQCKI
CMDRAINTVFNPCCHVIACAQCAARCSNCPNCRVKITSVVKIYLPPELRT
SQTGSGATTTSSSSIMGDGQVEEQLLQQQLDEISAAPASLEAGADAGVGV
GGMAVGAGAGAGATGPGGQPKVTTAAASFLDH
BO04849.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:14:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnr1-PB | 696 | CG12489-PB | 1..680 | 1..680 | 3507 | 99.6 | Plus |
| dnr1-PA | 676 | CG12489-PA | 1..676 | 1..676 | 3502 | 100 | Plus |
