Clone Sequence Records
BO04852.3prime Sequence
954 bp (887 high quality bases) assembled on 2005-12-02
> BO04852.3prime
ATGGTCTAGAAAGCTTGCTTTTTTAAGTTTCCCATCAGCGCCGTTTACGG
AGAAGTCGTTGTCTGAAACCTTCCGAATTAAACGCGAGTGCGTCGGTAAG
TTCCTAGCGTTCCATTCCCGCTGAGCACTAGCGGCGATACCGTGATGCTT
ACTAGAATTACGCATGCCGAGGCTGGGGAATTCAGAAACTTCGTTTAAAT
TTGCGGCAAAGGAAGTGTGGTCTATGGGCTTGTAGGAGCTTGATGCGACG
GAAAGTCGACTGCTAGAAAGCGAACAAGCTTCGGGTTGGCTTTCCTTCTT
GACCCCAGATCCGGGAAGCGAATAAAAAGAGTCGAAGGAGGACTCGTGGT
CGAGTGAGGAGGCGTACGAGCTTATGATAAGGTAGTTGGGTTTTGTTTGG
GCAGGTATGTGCTTTCCGGGTTGGACGGTTATGGCCAGGTCTCCGCACAT
AAAATCAGTGAAGGTATACGCCCATCTAGTCACCATACTCTGGGTACAGT
ACTTGGTTCGATCATTATCCTCGTGGTACTGACACGCAATCCCTGCGGTA
AACTCGAAAAAGTCTTTCTTAAAAAAAGCATCCGTCGCGAATTTGTTGAT
TTTCTCGTCATTCAAATCAGCGACATTCATGACCTCCTTCTTCAATATGA
ATAGCAAGTACTGGATATCAAACACCTGGATTTTTTCGCCCCCGTCCCTG
AAGTCATCATCGCACTCCAAATAGCGGAAGCATGACTTCACCATGGTAAT
ATTTTCGGCGGGTGTAAAGACTACTAGGGTCTTGCCTTTTCCCTGGCATT
TGGATAAGTAGTCAACAATGTTGCGGTACAGCTTGGTCATGTTCTTCTCC
CCCAGCGCGTTGGGCGGCAGCGGCAGGTCGTGAGTGGTTGAAGAGTGAAG
CAGGGCATCGCTACCTTGCCCAAAATGATCTGACCGGGGTCAATCATGGT
GCTG
BO04852.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11254-PA | 1380 | mael-RA | 471..1377 | 925..19 | 4535 | 100 | Minus |
CG11254-PC | 1389 | mael-RC | 480..1386 | 925..19 | 4535 | 100 | Minus |
CG11254-PB | 1380 | mael-RB | 471..1377 | 925..19 | 4535 | 100 | Minus |
CG11254-PA | 1380 | mael-RA | 441..473 | 954..922 | 165 | 100 | Minus |
CG11254-PC | 1389 | mael-RC | 450..482 | 954..922 | 165 | 100 | Minus |
CG11254-PB | 1380 | mael-RB | 441..473 | 954..922 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mael-RD | 2143 | CG11254-RD | 1087..2023 | 954..19 | 4660 | 99.9 | Minus |
mael-RB | 1830 | CG11254-RB | 774..1710 | 954..19 | 4660 | 99.9 | Minus |
mael-RC | 1839 | CG11254-RC | 783..1719 | 954..19 | 4660 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:30:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22725602..22726114 | 531..19 | 2565 | 100 | Minus |
3L | 28110227 | 3L | 22725116..22725542 | 954..529 | 2085 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:30:14 has no hits.
BO04852.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:29 Download gff for
BO04852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-PA | 441..1380 | 15..954 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:30 Download gff for
BO04852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11254-PB | 441..1380 | 15..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:56 Download gff for
BO04852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RA | 703..1648 | 8..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:35:44 Download gff for
BO04852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RC | 783..1728 | 8..954 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:35:44 Download gff for
BO04852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22725116..22725542 | 529..954 | 99 | -> | Minus |
3L | 22725605..22726123 | 8..528 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:56 Download gff for
BO04852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22718216..22718642 | 529..954 | 99 | -> | Minus |
arm_3L | 22718705..22719223 | 8..528 | 99 | | Minus |
BO04852.5prime Sequence
867 bp (841 high quality bases) assembled on 2005-11-29
> BO04852.5prime
GAAGTTATCAGTCGACATGGCTCCTAAGAAGCATAGTGGGTTTATGATGT
TCGTAAACGAGTGGAGAAACCGGAACGCCGAGGGCCGACGCATGACGCTG
GCGCAGGCTGTTTCCCACTGCGGCACCATATGGGAGAAAATGAACACCCA
GCAGCGTGGTCCGTACAACTCAGGCGGCAAGGACGCAAATGTGGCGCAAC
GCGCCAAAAGGGAAAGTTCCAACGGCCACGGCCAGGTGGACAAGGCCCAA
AGGGAGGCCACCGAGAGCTTGATGGACATGAAACGTACCATCGAGCGCCT
CGTGCTAAACGCCAAGATGTCCCATGATCTGGAGAATGCCAAGTTTGTCT
TCGTTGCCTTCAACTACTTCACTAAAGCCTTGACCACCGACGTCTATGTG
CCCGCCGAGTTTGCGGCATGCGAATATTCGTTGAAGGAGGGAATCCGATC
CATCTACAGCACCATGATTGACCCCGGTCAGATCATTTTTGGGCAAGGTA
GCGATGCCCTGCTTCACTCTTCAACCACTCACGACCTGCCGCTGCCGCCC
AACGCGCTGGGGGAGAAGAACATGACCAAGCTGTACCGCAACATTGTTGA
CTACTTATCCAAATGCCAGGGAAAAGGCAAGACCCTAGTAGTCTTTACAC
CCGCCGAAAATATTACCATGGTGAAGTCATGCTTCCGCTATTTGGAGTGC
GATGATGACTTCAGGGACGGGGGCGAAAAAATCCAGGTGTTTGATATCCA
GTACTTGCTATTCATATTGAAGAAGGAGGTCATGAATGTCGCTGATTTGA
ATGACGAGAAAATCAACAAATTCGCGACGGATGCTTTTTTTAAGAAAGAC
TTTTTCGAGTTTACCGC
BO04852.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11254-PA | 1380 | mael-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
CG11254-PB | 1380 | mael-RB | 1..851 | 17..867 | 4255 | 100 | Plus |
CG11254-PC | 1389 | mael-RC | 128..860 | 135..867 | 3665 | 100 | Plus |
CG11254-PC | 1389 | mael-RC | 1..120 | 17..136 | 600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mael-RD | 2143 | CG11254-RD | 647..1497 | 17..867 | 4255 | 100 | Plus |
mael-RB | 1830 | CG11254-RB | 334..1184 | 17..867 | 4255 | 100 | Plus |
mael-RA | 1759 | CG11254-RA | 263..1113 | 17..867 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22724985..22725526 | 326..867 | 2710 | 100 | Plus |
3L | 28110227 | 3L | 22724738..22724929 | 135..326 | 960 | 100 | Plus |
3L | 28110227 | 3L | 22724566..22724685 | 17..136 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:41:35 has no hits.
BO04852.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:30 Download gff for
BO04852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:31 Download gff for
BO04852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11254-PB | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:45 Download gff for
BO04852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RA | 257..1113 | 11..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:43 Download gff for
BO04852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RA | 257..1113 | 11..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:43 Download gff for
BO04852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22724560..22724685 | 11..136 | 97 | -> | Plus |
3L | 22724740..22724929 | 137..326 | 100 | -> | Plus |
3L | 22724986..22725526 | 327..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:45 Download gff for
BO04852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22717660..22717785 | 11..136 | 97 | -> | Plus |
arm_3L | 22717840..22718029 | 137..326 | 100 | -> | Plus |
arm_3L | 22718086..22718626 | 327..867 | 100 | | Plus |
BO04852.complete Sequence
1411 bp (1411 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629896
> BO04852.complete
GAAGTTATCAGTCGACATGGCTCCTAAGAAGCATAGTGGGTTTATGATGT
TCGTAAACGAGTGGAGAAACCGGAACGCCGAGGGCCGACGCATGACGCTG
GCGCAGGCTGTTTCCCACTGCGGCACCATATGGGAGAAAATGAACACCCA
GCAGCGTGGTCCGTACAACTCAGGCGGCAAGGACGCAAATGTGGCGCAAC
GCGCCAAAAGGGAAAGTTCCAACGGCCACGGCCAGGTGGACAAGGCCCAA
AGGGAGGCCACCGAGAGCTTGATGGACATGAAACGTACCATCGAGCGCCT
CGTGCTAAACGCCAAGATGTCCCATGATCTGGAGAATGCCAAGTTTGTCT
TCGTTGCCTTCAACTACTTCACTAAAGCCTTGACCACCGACGTCTATGTG
CCCGCCGAGTTTGCGGCATGCGAATATTCGTTGAAGGAGGGAATCCGATC
CATCTACAGCACCATGATTGACCCCGGTCAGATCATTTTTGGGCAAGGTA
GCGATGCCCTGCTTCACTCTTCAACCACTCACGACCTGCCGCTGCCGCCC
AACGCGCTGGGGGAGAAGAACATGACCAAGCTGTACCGCAACATTGTTGA
CTACTTATCCAAATGCCAGGGAAAAGGCAAGACCCTAGTAGTCTTTACAC
CCGCCGAAAATATTACCATGGTGAAGTCATGCTTCCGCTATTTGGAGTGC
GATGATGACTTCAGGGACGGGGGCGAAAAAATCCAGGTGTTTGATATCCA
GTACTTGCTATTCATATTGAAGAAGGAGGTCATGAATGTCGCTGATTTGA
ATGACGAGAAAATCAACAAATTCGCGACGGATGCTTTTTTTAAGAAAGAC
TTTTTCGAGTTTACCGCAGGGATTGCGTGTCAGTACCACGAGGATAATGA
TCGAACCAAGTACTGTACCCAGAGTATGGTGACTAGATGGGCGTATACCT
TCACTGATTTTATGTGCGGAGACCTGGCCATAACCGTCCAACCCGGAAAG
CACATACCTGCCCAAACAAAACCCAACTACCTTATCATAAGCTCGTACGC
CTCCTCACTCGACCACGAGTCCTCCTTCGACTCTTTTTATTCGCTTCCCG
GATCTGGGGTCAAGAAGGAAAGCCAACCCGAAGCTTGTTCGCTTTCTAGC
AGTCGACTTTCCGTCGCATCAAGCTCCTACAAGCCCATAGACCACACTTC
CTTTGCCGCAAATTTAAACGAAGTTTCTGAATTCCCCAGCCTCGGCATGC
GTAATTCTAGTAAGCATCACGGTATCGCCGCTAGTGCTCAGCGGGAATGG
AACGCTAGGAACTTACCGACGCACTCGCGTTTAATTCGGAAGGTTTCAGA
CAACGACTTCTCCGTAAACGGCGCTGATGGGAAACTTAAAAAAGCAAGCT
TTCTAGACCAT
BO04852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mael-RD | 1380 | CG11254-PD | 1..1377 | 17..1393 | 6885 | 100 | Plus |
mael-RB | 1380 | CG11254-PB | 1..1377 | 17..1393 | 6885 | 100 | Plus |
mael-RA | 1380 | CG11254-PA | 1..1377 | 17..1393 | 6885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mael-RD | 2143 | CG11254-RD | 647..2023 | 17..1393 | 6885 | 100 | Plus |
mael-RB | 1830 | CG11254-RB | 334..1710 | 17..1393 | 6885 | 100 | Plus |
mael-RA | 1759 | CG11254-RA | 263..1639 | 17..1393 | 6885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22724985..22725542 | 326..883 | 2790 | 100 | Plus |
3L | 28110227 | 3L | 22725602..22726114 | 881..1393 | 2565 | 100 | Plus |
3L | 28110227 | 3L | 22724738..22724929 | 135..326 | 960 | 100 | Plus |
3L | 28110227 | 3L | 22724566..22724685 | 17..136 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:20:38 has no hits.
BO04852.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:14 Download gff for
BO04852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RB | 1..1380 | 17..1397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:01 Download gff for
BO04852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RB | 327..1718 | 11..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:35 Download gff for
BO04852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RA | 263..1633 | 17..1387 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:14 Download gff for
BO04852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RB | 327..1718 | 11..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:23 Download gff for
BO04852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RA | 263..1633 | 17..1387 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:23 Download gff for
BO04852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22724566..22724685 | 17..136 | 100 | -> | Plus |
3L | 22724740..22724929 | 137..326 | 100 | -> | Plus |
3L | 22724986..22725542 | 327..883 | 100 | -> | Plus |
3L | 22725605..22726108 | 884..1387 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:35 Download gff for
BO04852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22717666..22717785 | 17..136 | 100 | -> | Plus |
arm_3L | 22717840..22718029 | 137..326 | 100 | -> | Plus |
arm_3L | 22718086..22718642 | 327..883 | 100 | -> | Plus |
arm_3L | 22718705..22719208 | 884..1387 | 100 | | Plus |
BO04852.pep Sequence
Translation from 16 to 1411
> BO04852.pep
MAPKKHSGFMMFVNEWRNRNAEGRRMTLAQAVSHCGTIWEKMNTQQRGPY
NSGGKDANVAQRAKRESSNGHGQVDKAQREATESLMDMKRTIERLVLNAK
MSHDLENAKFVFVAFNYFTKALTTDVYVPAEFAACEYSLKEGIRSIYSTM
IDPGQIIFGQGSDALLHSSTTHDLPLPPNALGEKNMTKLYRNIVDYLSKC
QGKGKTLVVFTPAENITMVKSCFRYLECDDDFRDGGEKIQVFDIQYLLFI
LKKEVMNVADLNDEKINKFATDAFFKKDFFEFTAGIACQYHEDNDRTKYC
TQSMVTRWAYTFTDFMCGDLAITVQPGKHIPAQTKPNYLIISSYASSLDH
ESSFDSFYSLPGSGVKKESQPEACSLSSSRLSVASSSYKPIDHTSFAANL
NEVSEFPSLGMRNSSKHHGIAASAQREWNARNLPTHSRLIRKVSDNDFSV
NGADGKLKKASFLDH
BO04852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mael-PD | 459 | CG11254-PD | 1..459 | 1..459 | 2409 | 100 | Plus |
mael-PB | 459 | CG11254-PB | 1..459 | 1..459 | 2409 | 100 | Plus |
mael-PA | 459 | CG11254-PA | 1..459 | 1..459 | 2409 | 100 | Plus |
mael-PC | 462 | CG11254-PC | 1..462 | 1..459 | 2395 | 99.4 | Plus |