Clone BO04853 Report

Search the DGRC for BO04853

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptRcd6-RA
Protein status:BO04853.pep: Imported from assembly
Sequenced Size:1573

Clone Sequence Records

BO04853.3prime Sequence

628 bp (492 high quality bases) assembled on 2005-12-02

> BO04853.3prime
ATGGTCTAGAAAGCTTGCAAGAGCCACATCGCGGTACTTCCGGTAATCGT
CGGACTCGTTGCCCAGCGACAACTTGCTGTTGGCCGTGATGTACGGATTG
GTGTAGTTGGCATAGCCAAAGCCCCCGTAATACTGCATCTGCTGGCTGTG
CGTGGAGCCGCGTCGCTGCATCGGCTGGGCCAGCACGGTGCCGGCGAATC
CGCCAGTGGAGCTGCAATTGGATGGCCTGCGGTAAATGCCGCCAGCCTGC
TGGTGGTGCAGCTGTTGCTGCTGCTGCTGGTGAAGCAGCATGGCCAGGTA
ATACTGCTGCTGCTGCGTGTAGTTCTGGAGTAGATTGTTCCCGTAGGCGG
TCAGATCATTCTGCACCTTGCTGATCCCGTCAAGGTTCTCCAGGGATACG
CAATTCCGGGACAGTTTACCCGGTGGTGGCTGCTTGTGTGTGCCGCGTGG
ACGATGGTGGCTCCTCTGCTGTGCCGGTGGCGGTGTCAACTGCTTGGGCT
CAATGGAGCAGTAGATGGGATCGTTGCTGGTGGAACCGATCAGCGAAGGC
GGCGATGGTCGGTGCGAGTCGTGGAGATTGTTTCTCAAATCGTCGATGGT
GATGTTGAAGTACTTGGCGTTTTTATCC

BO04853.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11175-PA 1542 CG11175-RA 930..1539 628..19 3000 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd6-RB 3135 CG11175-RB 1913..2522 628..19 3020 99.7 Minus
Rcd6-RA 2574 CG11175-RA 1352..1961 628..19 3020 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20628799..20629408 19..628 3020 99.7 Plus
Blast to na_te.dros performed 2015-02-13 15:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6792..6918 335..207 189 63.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6825 324..248 175 71.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..6805 336..247 172 69.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2317..2417 351..247 163 65.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1493..1587 342..249 157 65.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6845..6913 315..247 156 69.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6838 364..247 149 63 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6717..6858 398..248 147 61.2 Minus
roo 9092 roo DM_ROO 9092bp 1077..1163 335..249 147 63.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2559..2662 353..248 146 64.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2384 324..247 144 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2440..2531 335..247 137 64.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6784 311..247 136 67.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2724..2957 311..74 134 55.4 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 855..1015 404..242 134 57.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2392 288..207 133 68.6 Minus
roo 9092 roo DM_ROO 9092bp 1082..1144 315..247 133 71 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2476 380..248 130 58.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6923 288..76 130 56.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2778..2871 346..249 127 65.7 Minus
roo 9092 roo DM_ROO 9092bp 1085..1120 282..247 126 83.3 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3210..3334 363..237 124 59.4 Minus
roo 9092 roo DM_ROO 9092bp 1055..1093 285..247 114 76.9 Minus
roo 9092 roo DM_ROO 9092bp 1070..1132 291..227 113 66.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6765 289..248 111 73.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2362..2431 324..254 109 63.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1530..1565 282..247 108 77.8 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7954..8062 283..173 108 61.4 Minus
TART-C 11124 TART-C TARTC 11124bp 9398..9506 283..173 108 61.4 Minus

BO04853.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:31 Download gff for BO04853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11175-PA 930..1542 16..628 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:32 Download gff for BO04853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11175-PA 930..1542 16..628 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:56 Download gff for BO04853.3prime
Subject Subject Range Query Range Percent Splice Strand
Rcd6-RA 1352..1961 19..628 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:16:04 Download gff for BO04853.3prime
Subject Subject Range Query Range Percent Splice Strand
Rcd6-RA 1352..1961 19..628 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:16:04 Download gff for BO04853.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20628799..20629408 19..628 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:56 Download gff for BO04853.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16516304..16516913 19..628 99   Plus

BO04853.5prime Sequence

793 bp (704 high quality bases) assembled on 2005-12-02

> BO04853.5prime
GAAGTTATCAGTCGACATGAATTATCAGAAGGCCAGTGAAAAGCAGTCGT
CGTCCTCATTGAAGAAGCGGCCGCCGGGCAACGGCAATAGCATACAAAAC
TTTTGGAACGATCGCATTATGGAGCGCTTCATAAAGGCGAATCTATTCAT
TATCTGCTGCGTGGTGGCGGTTCTATTGCTGATCGTCTATCTGGGTGCCT
TCTCGTGTGAGGTCTCGTGGATACTGGAGGCCCACGGCGAGCTGCCCTTC
GCCGCCTACACGCTCTGCTCGCTCTACTTTGTCATGTTCGTGGCCACCAC
GATCCTTATCCACGGCCTGGTCAGCGGACTCTGCTGGCCGTTGTTCGCCT
GGTCGGGCATCATCGGTCTCCTCTCAATTCCAGAGCTGGTCTTTGTCATG
ATCATGACCACACAGCACTGGGGTCTGCAATCTGTGCATGGATTAACGGA
GCTCACCTCCTACCTGATTCGCCTCATCATCAACTGCTTCGCGCTGATCT
GTGTGATTCCCACGGGCATCAGGTGGCGACGGGAGACTCAGGTGTTGAGT
CAGCTGCAAGGATTGGCCACCAGACTTTCCCTGCAGACTCCAGCGCCCAG
TGTGCCCATTACAAAGGCAGATTCCCGGCGATCCAGCCAGCGGCTAAGTG
GATTCGAGAATGCCGGCTACCAGCTGTGCGATGAAACAGCTTCCAAGTTG
CCACTAGGGCCAGGAATGGGACTGGGCATGACAACCAGTGTGGAGGCAGT
CAAGCATTTGGCTCGCAGAACGAAATCAACGCCAGCATGTTTG

BO04853.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11175-PA 1542 CG11175-RA 1..715 17..731 3575 100 Plus
CG11175-PA 1542 CG11175-RA 716..778 731..793 290 98.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd6-RB 3135 CG11175-RB 984..1761 17..793 3850 99.7 Plus
Rcd6-RA 2574 CG11175-RA 423..1200 17..793 3850 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20629560..20629933 793..421 1805 99.5 Minus
2R 25286936 2R 20630025..20630266 422..181 1210 100 Minus
2R 25286936 2R 20630684..20630848 181..17 825 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:27:15 has no hits.

BO04853.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:32 Download gff for BO04853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11175-PA 1..778 17..793 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:34 Download gff for BO04853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11175-PA 1..778 17..793 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:43:25 Download gff for BO04853.5prime
Subject Subject Range Query Range Percent Splice Strand
Rcd6-RA 423..1200 17..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:25 Download gff for BO04853.5prime
Subject Subject Range Query Range Percent Splice Strand
Rcd6-RA 423..1200 17..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:25 Download gff for BO04853.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20629560..20629932 422..793 99 <- Minus
2R 20630026..20630265 182..421 100 <- Minus
2R 20630684..20630848 17..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:43:25 Download gff for BO04853.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16517065..16517437 422..793 99 <- Minus
arm_2R 16517531..16517770 182..421 100 <- Minus
arm_2R 16518189..16518353 17..181 100   Minus

BO04853.complete Sequence

1573 bp assembled on 2008-08-14

GenBank Submission: FJ629897

> BO04853.complete
GAAGTTATCAGTCGACATGAATTATCAGAAGGCCAGTGAAAAGCAGTCGT
CGTCCTCATTGAAGAAGCGGCCGCCGGGCAACGGCAATAGCATACAAAAC
TTTTGGAACGATCGCATTATGGAGCGCTTCATAAAGGCGAATCTATTCAT
TATCTGCTGCGTGGTGGCGGTTCTATTGCTGATCGTCTATCTGGGTGCCT
TCTCGTGTGAGGTCTCGTGGATACTGGAGGCCCACGGCGAGCTGCCCTTC
GCCGCCTACACGCTCTGCTCGCTCTACTTTGTCATGTTCGTGGCCACCAC
GATCCTTATCCACGGCCTGGTCAGCGGACTCTGCTGGCCGTTGTTCGCCT
GGTCGGGCATCATCGGTCTCCTCTCAATTCCAGAGCTGGTCTTTGTCATG
ATCATGACCACACAGCACTGGGGTCTGCAATCTGTGCATGGATTAACGGA
GCTCACCTCCTACCTGATTCGCCTCATCATCAACTGCTTCGCGCTGATCT
GTGTGATTCCCACGGGCATCAGGTGGCGACGGGAGACTCAGGTGTTGAGT
CAGCTGCAAGGATTGGCCACCAGACTTTCCCTGCAGACTCCAGCGCCCAG
TGTGCCCATTACAAAGGCAGATTCCCGGCGATCCAGCCAGCGGCTAAGTG
GATTCGAGAATGCCGGCTACCAGCTGTGCGATGAAACAGCTTCCAAGTTG
CCACTAGGGCCAGGAATGGGACTGGGCATGAACAACCAGTGTGGAGGCAG
TCAAGCATTTGGCTCGCAGAACGAATTCAACGCCAGCATGTTTGCACCCG
CATTGGCACAGCAGTTCAACAATGCCACGTTGATGCAGCGCGGCGGAACA
GGCGGAGCAGGTGGTGGTCATCGCGCCCAGTCGCTGATGGATCTGCGCTG
CACTCTGCCCGGCATGTACAATCCACGACATGTGCTCGATACGGAGGATA
AAAACGCCAAGTACTTCAACATCACCATCGACGATTTGAAGAACAATCTC
CACGACTCGCACCGACCATCGCCGCCTTCGCTGATCGGTTCCACCAGCAA
CGATCCCATCTACTGCTCCATTGAGCCCAAGCAGTTGACACCGCCACCGG
CACAGCAGAGGAGCCACCATCGTCCACGCGGCACACACAAGCAGCCACCA
CCGGGTAAACTGTCCCGGAATTGCGTATCCCTGGAGAACCTTGACGGGAT
CAGCAAGGTGCAGAATGATCTGACCGCCTACGGGAACAATCTACTCCAGA
ACTACACGCAGCAGCAGCAGTATTACCTGGCCATGCTGCTTCACCAGCAG
CAGCAGCAACAGCTGCACCACCAGCAGGCTGGCGGCATTTACCGCAGGCC
ATCCAATTGCAGCTCCACTGGCGGATTCGCCGGCACCGTGCTGGCCCAGC
CGATGCAGCGACGCGGCTCCACGCACAGCCAGCAGATGCAGTATTACGGG
GGCTTTGGCTATGCCAACTACACCAATCCGTACATCACGGCCAACAGCAA
GTTGTCGCTGGGCAACGAGTCCGACGATTACCGGAAGTACCGCGATGTGG
CTCTTGCAAGCTTTCTAGACCAT

BO04853.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd6-RB 1542 CG11175-PB 1..1539 17..1555 7695 100 Plus
Rcd6-RA 1542 CG11175-PA 1..1539 17..1555 7695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd6-RB 3135 CG11175-RB 984..2522 17..1555 7695 100 Plus
Rcd6-RA 2574 CG11175-RA 423..1961 17..1555 7695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20628799..20629933 1555..421 5675 100 Minus
2R 25286936 2R 20630025..20630266 422..181 1210 100 Minus
2R 25286936 2R 20630684..20630848 181..17 825 100 Minus
Blast to na_te.dros performed 2014-11-27 10:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6792..6918 1239..1367 189 63.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6825 1250..1326 175 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..6805 1238..1327 172 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2317..2417 1223..1327 163 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1493..1587 1232..1325 157 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6845..6913 1259..1327 156 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6838 1210..1327 149 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6717..6858 1176..1326 147 61.2 Plus
roo 9092 roo DM_ROO 9092bp 1077..1163 1239..1325 147 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2559..2662 1221..1326 146 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2384 1250..1327 144 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2440..2531 1239..1327 137 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6784 1263..1327 136 67.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2724..2957 1263..1500 134 55.4 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 855..1015 1170..1332 134 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2392 1286..1367 133 68.6 Plus
roo 9092 roo DM_ROO 9092bp 1082..1144 1259..1327 133 71 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2476 1194..1326 130 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6923 1286..1498 130 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2778..2871 1228..1325 127 65.7 Plus
roo 9092 roo DM_ROO 9092bp 1085..1120 1292..1327 126 83.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3210..3334 1211..1337 124 59.4 Plus
roo 9092 roo DM_ROO 9092bp 1055..1093 1289..1327 114 76.9 Plus
roo 9092 roo DM_ROO 9092bp 1070..1132 1283..1347 113 66.2 Plus

BO04853.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:35 Download gff for BO04853.complete
Subject Subject Range Query Range Percent Splice Strand
CG11175-RA 390..1928 17..1555 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:45 Download gff for BO04853.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd6-RA 423..1961 17..1557 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:18 Download gff for BO04853.complete
Subject Subject Range Query Range Percent Splice Strand
CG11175-RA 390..1928 17..1557 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:02 Download gff for BO04853.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd6-RA 423..1961 17..1557 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:02 Download gff for BO04853.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20628796..20629932 422..1557 99 <- Minus
2R 20630026..20630265 182..421 100 <- Minus
2R 20630684..20630848 17..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:45 Download gff for BO04853.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16518189..16518353 17..181 100   Minus
arm_2R 16516301..16517437 422..1557 99 <- Minus
arm_2R 16517531..16517770 182..421 100 <- Minus

BO04853.pep Sequence

Translation from 16 to 1573

> BO04853.pep
MNYQKASEKQSSSSLKKRPPGNGNSIQNFWNDRIMERFIKANLFIICCVV
AVLLLIVYLGAFSCEVSWILEAHGELPFAAYTLCSLYFVMFVATTILIHG
LVSGLCWPLFAWSGIIGLLSIPELVFVMIMTTQHWGLQSVHGLTELTSYL
IRLIINCFALICVIPTGIRWRRETQVLSQLQGLATRLSLQTPAPSVPITK
ADSRRSSQRLSGFENAGYQLCDETASKLPLGPGMGLGMNNQCGGSQAFGS
QNEFNASMFAPALAQQFNNATLMQRGGTGGAGGGHRAQSLMDLRCTLPGM
YNPRHVLDTEDKNAKYFNITIDDLKNNLHDSHRPSPPSLIGSTSNDPIYC
SIEPKQLTPPPAQQRSHHRPRGTHKQPPPGKLSRNCVSLENLDGISKVQN
DLTAYGNNLLQNYTQQQQYYLAMLLHQQQQQQLHHQQAGGIYRRPSNCSS
TGGFAGTVLAQPMQRRGSTHSQQMQYYGGFGYANYTNPYITANSKLSLGN
ESDDYRKYRDVALASFLDH

BO04853.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd6-PB 513 CG11175-PB 1..513 1..513 2725 100 Plus
Rcd6-PA 513 CG11175-PA 1..513 1..513 2725 100 Plus