Clone Sequence Records
BO04856.3prime Sequence
545 bp (544 high quality bases) assembled on 2005-12-02
> BO04856.3prime
ATGGTCTAGAAAGCTTGCGATGCGACCGCTTTTGCTCGCCGTCGACGTGG
ACAGCTGTTCCAGGCGGGAGCACAGCTCCTGGGCCAGGCGCAGTTGATTC
GCAGCGGCAGCGGCACACGAGGTGGCGGCTCCAGCGCCTGCTCCCACGGG
CAACTGGACTCCGGCCACGACTTCCGGGTAGCTGATGCACACGCCCACCC
AGCGAGCTTGACTGCAGGCATGGGACATGGCGAAATCACGTTTCCATTGG
ACACCGCACTGGCCGTCGCACAGGGGACAGGGACGCTCCAGGCTGTAGCC
ACCGCATTCGCTGCAGTCGAGGGACACATGGTCGTCCGTCCAGGAGACGC
CGCAGGTGAAGCAGGAGCCCATGTGCTGGCGCAGCTCCTCAATGGTCAGC
ACGTTGTCCATGCTGATCTCCAGGGGACTGCCCACCAGATCTGGCAGCGA
GGCAGACAGACCGAGATTGTGATGCGACAGGGGACTGCAGATGTCGGCGA
TTTGGGGACCGTGAACACTGGCGATCGACATGTCGACTGATAACT
BO04856.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4710-PB | 750 | smi21F-RB | 235..747 | 531..19 | 2565 | 100 | Minus |
CG4710-PA | 516 | smi21F-RA | 1..513 | 531..19 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pino-RC | 2130 | CG4710-RC | 535..1047 | 531..19 | 2565 | 100 | Minus |
Pino-RA | 2079 | CG4710-RA | 484..996 | 531..19 | 2565 | 100 | Minus |
Pino-RB | 1980 | CG4710-RB | 385..897 | 531..19 | 2565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1116441..1116690 | 226..475 | 1250 | 100 | Plus |
2L | 23513712 | 2L | 1115737..1115944 | 19..226 | 1040 | 100 | Plus |
2L | 23513712 | 2L | 1117443..1117499 | 475..531 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 14:10:35 has no hits.
BO04856.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:35 Download gff for
BO04856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4710-PB | 227..750 | 18..539 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:38 Download gff for
BO04856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4710-PA | 1..516 | 18..531 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:57 Download gff for
BO04856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pino-RB | 377..903 | 13..539 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:35 Download gff for
BO04856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pino-RB | 377..903 | 13..539 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:35 Download gff for
BO04856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1115731..1115943 | 13..225 | 98 | <- | Plus |
2L | 1116441..1116690 | 226..475 | 100 | <- | Plus |
2L | 1117444..1117507 | 476..539 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:57 Download gff for
BO04856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1115731..1115943 | 13..225 | 98 | <- | Plus |
arm_2L | 1116441..1116690 | 226..475 | 100 | <- | Plus |
arm_2L | 1117444..1117507 | 476..539 | 95 | | Plus |
BO04856.5prime Sequence
545 bp (544 high quality bases) assembled on 2005-11-29
> BO04856.5prime
GAAGTTATCAGTCGACATGTCGATCGCCAGTGTTCACGGTCCCCAAATCG
CCGACATCTGCAGTCCCCTGTCGCATCACAATCTCGGTCTGTCTGCCTCG
CTGCCAGATCTGGTGGGCAGTCCCCTGGAGATCAGCATGGACAACGTGCT
GACCATTGAGGAGCTGCGCCAGCACATGGGCTCCTGCTTCACCTGCGGCG
TCTCCTGGACGGACGACCATGTGTCCCTCGACTGCAGCGAATGCGGTGGC
TACAGCCTGGAGCGTCCCTGTCCCCTGTGCGACGGCCAGTGCGGTGTCCA
ATGGAAACGTGATTTCGCCATGTCCCATGCCTGCAGTCAAGCTCGCTGGG
TGGGCGTGTGCATCAGCTACCCGGAAGTCGTGGCCGGAGTCCAGTTGCCC
GTGGGAGCAGGCGCTGGAGCCGCCACCTCGTGTGCCGCTGCCGCTGCGAA
TCAACTGCGCCTGGCCCAGGAGCTGTGCTCCCGCCTGGAACAGCTGTCCA
CGTCGACGGCGAGCAAAAGCGGTCGCATCGCAAGCTTTCTAGACC
BO04856.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4710-PB | 750 | smi21F-RB | 235..747 | 17..529 | 2565 | 100 | Plus |
CG4710-PA | 516 | smi21F-RA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pino-RC | 2130 | CG4710-RC | 535..1047 | 17..529 | 2565 | 100 | Plus |
Pino-RA | 2079 | CG4710-RA | 484..996 | 17..529 | 2565 | 100 | Plus |
Pino-RB | 1980 | CG4710-RB | 385..897 | 17..529 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1116441..1116690 | 322..73 | 1250 | 100 | Minus |
2L | 23513712 | 2L | 1115737..1115944 | 529..322 | 1040 | 100 | Minus |
2L | 23513712 | 2L | 1117443..1117499 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:40:38 has no hits.
BO04856.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:36 Download gff for
BO04856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4710-PB | 227..750 | 9..530 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:40 Download gff for
BO04856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4710-PA | 1..516 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:52 Download gff for
BO04856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pino-RB | 377..903 | 9..535 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:42 Download gff for
BO04856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pino-RB | 377..903 | 9..535 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:42 Download gff for
BO04856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1117444..1117507 | 9..72 | 95 | | Minus |
2L | 1115731..1115943 | 323..535 | 98 | <- | Minus |
2L | 1116441..1116690 | 73..322 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:52 Download gff for
BO04856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1115731..1115943 | 323..535 | 98 | <- | Minus |
arm_2L | 1116441..1116690 | 73..322 | 100 | <- | Minus |
arm_2L | 1117444..1117507 | 9..72 | 95 | | Minus |
BO04856.complete Sequence
547 bp (547 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629899
> BO04856.complete
GAAGTTATCAGTCGACATGTCGATCGCCAGTGTTCACGGTCCCCAAATCG
CCGACATCTGCAGTCCCCTGTCGCATCACAATCTCGGTCTGTCTGCCTCG
CTGCCAGATCTGGTGGGCAGTCCCCTGGAGATCAGCATGGACAACGTGCT
GACCATTGAGGAGCTGCGCCAGCACATGGGCTCCTGCTTCACCTGCGGCG
TCTCCTGGACGGACGACCATGTGTCCCTCGACTGCAGCGAATGCGGTGGC
TACAGCCTGGAGCGTCCCTGTCCCCTGTGCGACGGCCAGTGCGGTGTCCA
ATGGAAACGTGATTTCGCCATGTCCCATGCCTGCAGTCAAGCTCGCTGGG
TGGGCGTGTGCATCAGCTACCCGGAAGTCGTGGCCGGAGTCCAGTTGCCC
GTGGGAGCAGGCGCTGGAGCCGCCACCTCGTGTGCCGCTGCCGCTGCGAA
TCAACTGCGCCTGGCCCAGGAGCTGTGCTCCCGCCTGGAACAGCTGTCCA
CGTCGACGGCGAGCAAAAGCGGTCGCATCGCAAGCTTTCTAGACCAT
BO04856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pino-RC | 516 | CG4710-PC | 1..513 | 17..529 | 2565 | 100 | Plus |
Pino-RA | 516 | CG4710-PA | 1..513 | 17..529 | 2565 | 100 | Plus |
Pino-RB | 750 | CG4710-PB | 235..747 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pino-RC | 2130 | CG4710-RC | 535..1047 | 17..529 | 2565 | 100 | Plus |
Pino-RA | 2079 | CG4710-RA | 484..996 | 17..529 | 2565 | 100 | Plus |
Pino-RB | 1980 | CG4710-RB | 385..897 | 17..529 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1116441..1116690 | 322..73 | 1250 | 100 | Minus |
2L | 23513712 | 2L | 1115737..1115944 | 529..322 | 1040 | 100 | Minus |
2L | 23513712 | 2L | 1117443..1117499 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:30:42 has no hits.
BO04856.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:55 Download gff for
BO04856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smi21F-RB | 227..750 | 9..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:59 Download gff for
BO04856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pino-RA | 584..1110 | 9..535 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:42 Download gff for
BO04856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pino-RB | 385..897 | 17..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:55 Download gff for
BO04856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smi21F-RA | 584..1110 | 9..535 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:44 Download gff for
BO04856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pino-RB | 385..897 | 17..531 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:44 Download gff for
BO04856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1116441..1116690 | 73..322 | 100 | <- | Minus |
2L | 1117444..1117499 | 17..72 | 100 | | Minus |
2L | 1115735..1115943 | 323..531 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:42 Download gff for
BO04856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1116441..1116690 | 73..322 | 100 | <- | Minus |
arm_2L | 1117444..1117499 | 17..72 | 100 | | Minus |
arm_2L | 1115735..1115943 | 323..531 | 99 | <- | Minus |
BO04856.pep Sequence
Translation from 16 to 547
> BO04856.pep
MSIASVHGPQIADICSPLSHHNLGLSASLPDLVGSPLEISMDNVLTIEEL
RQHMGSCFTCGVSWTDDHVSLDCSECGGYSLERPCPLCDGQCGVQWKRDF
AMSHACSQARWVGVCISYPEVVAGVQLPVGAGAGAATSCAAAAANQLRLA
QELCSRLEQLSTSTASKSGRIASFLDH
BO04856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pino-PC | 171 | CG4710-PC | 1..171 | 1..171 | 911 | 100 | Plus |
Pino-PA | 171 | CG4710-PA | 1..171 | 1..171 | 911 | 100 | Plus |
Pino-PB | 249 | CG4710-PB | 79..249 | 1..171 | 911 | 100 | Plus |