Clone BO04856 Report

Search the DGRC for BO04856

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptPino-RA
Protein status:BO04856.pep: validated not full length
Sequenced Size:547

Clone Sequence Records

BO04856.3prime Sequence

545 bp (544 high quality bases) assembled on 2005-12-02

> BO04856.3prime
ATGGTCTAGAAAGCTTGCGATGCGACCGCTTTTGCTCGCCGTCGACGTGG
ACAGCTGTTCCAGGCGGGAGCACAGCTCCTGGGCCAGGCGCAGTTGATTC
GCAGCGGCAGCGGCACACGAGGTGGCGGCTCCAGCGCCTGCTCCCACGGG
CAACTGGACTCCGGCCACGACTTCCGGGTAGCTGATGCACACGCCCACCC
AGCGAGCTTGACTGCAGGCATGGGACATGGCGAAATCACGTTTCCATTGG
ACACCGCACTGGCCGTCGCACAGGGGACAGGGACGCTCCAGGCTGTAGCC
ACCGCATTCGCTGCAGTCGAGGGACACATGGTCGTCCGTCCAGGAGACGC
CGCAGGTGAAGCAGGAGCCCATGTGCTGGCGCAGCTCCTCAATGGTCAGC
ACGTTGTCCATGCTGATCTCCAGGGGACTGCCCACCAGATCTGGCAGCGA
GGCAGACAGACCGAGATTGTGATGCGACAGGGGACTGCAGATGTCGGCGA
TTTGGGGACCGTGAACACTGGCGATCGACATGTCGACTGATAACT

BO04856.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4710-PB 750 smi21F-RB 235..747 531..19 2565 100 Minus
CG4710-PA 516 smi21F-RA 1..513 531..19 2565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-RC 2130 CG4710-RC 535..1047 531..19 2565 100 Minus
Pino-RA 2079 CG4710-RA 484..996 531..19 2565 100 Minus
Pino-RB 1980 CG4710-RB 385..897 531..19 2565 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1116441..1116690 226..475 1250 100 Plus
2L 23513712 2L 1115737..1115944 19..226 1040 100 Plus
2L 23513712 2L 1117443..1117499 475..531 285 100 Plus
Blast to na_te.dros performed on 2015-02-12 14:10:35 has no hits.

BO04856.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:35 Download gff for BO04856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4710-PB 227..750 18..539 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:38 Download gff for BO04856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4710-PA 1..516 18..531 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:57 Download gff for BO04856.3prime
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 377..903 13..539 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:35 Download gff for BO04856.3prime
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 377..903 13..539 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:35 Download gff for BO04856.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1115731..1115943 13..225 98 <- Plus
2L 1116441..1116690 226..475 100 <- Plus
2L 1117444..1117507 476..539 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:57 Download gff for BO04856.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1115731..1115943 13..225 98 <- Plus
arm_2L 1116441..1116690 226..475 100 <- Plus
arm_2L 1117444..1117507 476..539 95   Plus

BO04856.5prime Sequence

545 bp (544 high quality bases) assembled on 2005-11-29

> BO04856.5prime
GAAGTTATCAGTCGACATGTCGATCGCCAGTGTTCACGGTCCCCAAATCG
CCGACATCTGCAGTCCCCTGTCGCATCACAATCTCGGTCTGTCTGCCTCG
CTGCCAGATCTGGTGGGCAGTCCCCTGGAGATCAGCATGGACAACGTGCT
GACCATTGAGGAGCTGCGCCAGCACATGGGCTCCTGCTTCACCTGCGGCG
TCTCCTGGACGGACGACCATGTGTCCCTCGACTGCAGCGAATGCGGTGGC
TACAGCCTGGAGCGTCCCTGTCCCCTGTGCGACGGCCAGTGCGGTGTCCA
ATGGAAACGTGATTTCGCCATGTCCCATGCCTGCAGTCAAGCTCGCTGGG
TGGGCGTGTGCATCAGCTACCCGGAAGTCGTGGCCGGAGTCCAGTTGCCC
GTGGGAGCAGGCGCTGGAGCCGCCACCTCGTGTGCCGCTGCCGCTGCGAA
TCAACTGCGCCTGGCCCAGGAGCTGTGCTCCCGCCTGGAACAGCTGTCCA
CGTCGACGGCGAGCAAAAGCGGTCGCATCGCAAGCTTTCTAGACC

BO04856.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4710-PB 750 smi21F-RB 235..747 17..529 2565 100 Plus
CG4710-PA 516 smi21F-RA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-RC 2130 CG4710-RC 535..1047 17..529 2565 100 Plus
Pino-RA 2079 CG4710-RA 484..996 17..529 2565 100 Plus
Pino-RB 1980 CG4710-RB 385..897 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1116441..1116690 322..73 1250 100 Minus
2L 23513712 2L 1115737..1115944 529..322 1040 100 Minus
2L 23513712 2L 1117443..1117499 73..17 285 100 Minus
Blast to na_te.dros performed on 2015-02-09 18:40:38 has no hits.

BO04856.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:36 Download gff for BO04856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4710-PB 227..750 9..530 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:40 Download gff for BO04856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4710-PA 1..516 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:52 Download gff for BO04856.5prime
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 377..903 9..535 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:42 Download gff for BO04856.5prime
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 377..903 9..535 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:42 Download gff for BO04856.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1117444..1117507 9..72 95   Minus
2L 1115731..1115943 323..535 98 <- Minus
2L 1116441..1116690 73..322 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:52 Download gff for BO04856.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1115731..1115943 323..535 98 <- Minus
arm_2L 1116441..1116690 73..322 100 <- Minus
arm_2L 1117444..1117507 9..72 95   Minus

BO04856.complete Sequence

547 bp (547 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629899

> BO04856.complete
GAAGTTATCAGTCGACATGTCGATCGCCAGTGTTCACGGTCCCCAAATCG
CCGACATCTGCAGTCCCCTGTCGCATCACAATCTCGGTCTGTCTGCCTCG
CTGCCAGATCTGGTGGGCAGTCCCCTGGAGATCAGCATGGACAACGTGCT
GACCATTGAGGAGCTGCGCCAGCACATGGGCTCCTGCTTCACCTGCGGCG
TCTCCTGGACGGACGACCATGTGTCCCTCGACTGCAGCGAATGCGGTGGC
TACAGCCTGGAGCGTCCCTGTCCCCTGTGCGACGGCCAGTGCGGTGTCCA
ATGGAAACGTGATTTCGCCATGTCCCATGCCTGCAGTCAAGCTCGCTGGG
TGGGCGTGTGCATCAGCTACCCGGAAGTCGTGGCCGGAGTCCAGTTGCCC
GTGGGAGCAGGCGCTGGAGCCGCCACCTCGTGTGCCGCTGCCGCTGCGAA
TCAACTGCGCCTGGCCCAGGAGCTGTGCTCCCGCCTGGAACAGCTGTCCA
CGTCGACGGCGAGCAAAAGCGGTCGCATCGCAAGCTTTCTAGACCAT

BO04856.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-RC 516 CG4710-PC 1..513 17..529 2565 100 Plus
Pino-RA 516 CG4710-PA 1..513 17..529 2565 100 Plus
Pino-RB 750 CG4710-PB 235..747 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-RC 2130 CG4710-RC 535..1047 17..529 2565 100 Plus
Pino-RA 2079 CG4710-RA 484..996 17..529 2565 100 Plus
Pino-RB 1980 CG4710-RB 385..897 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1116441..1116690 322..73 1250 100 Minus
2L 23513712 2L 1115737..1115944 529..322 1040 100 Minus
2L 23513712 2L 1117443..1117499 73..17 285 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:30:42 has no hits.

BO04856.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:55 Download gff for BO04856.complete
Subject Subject Range Query Range Percent Splice Strand
smi21F-RB 227..750 9..530 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:59 Download gff for BO04856.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RA 584..1110 9..535 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:42 Download gff for BO04856.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 385..897 17..531 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:55 Download gff for BO04856.complete
Subject Subject Range Query Range Percent Splice Strand
smi21F-RA 584..1110 9..535 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:44 Download gff for BO04856.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 385..897 17..531 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:44 Download gff for BO04856.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1116441..1116690 73..322 100 <- Minus
2L 1117444..1117499 17..72 100   Minus
2L 1115735..1115943 323..531 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:42 Download gff for BO04856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1116441..1116690 73..322 100 <- Minus
arm_2L 1117444..1117499 17..72 100   Minus
arm_2L 1115735..1115943 323..531 99 <- Minus

BO04856.pep Sequence

Translation from 16 to 547

> BO04856.pep
MSIASVHGPQIADICSPLSHHNLGLSASLPDLVGSPLEISMDNVLTIEEL
RQHMGSCFTCGVSWTDDHVSLDCSECGGYSLERPCPLCDGQCGVQWKRDF
AMSHACSQARWVGVCISYPEVVAGVQLPVGAGAGAATSCAAAAANQLRLA
QELCSRLEQLSTSTASKSGRIASFLDH

BO04856.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-PC 171 CG4710-PC 1..171 1..171 911 100 Plus
Pino-PA 171 CG4710-PA 1..171 1..171 911 100 Plus
Pino-PB 249 CG4710-PB 79..249 1..171 911 100 Plus