Clone Sequence Records
BO04858.3prime Sequence
959 bp (894 high quality bases) assembled on 2005-12-02
> BO04858.3prime
ATGGTCTAGAAAGCTTGCATAACCCTTGAAGTACTTAAGCCTAAAGAGCG
GCACCTGTTTGCCCTTAGTGGCAAAGGCCAGGAAGCTGCTGTGCGGCGAA
AAGGCCATGGAGGTCACAAAGCCAACCTTCTCGTTCTGTGCCGGGAAATT
GGAGTACACAGTGGCGCTGGGGAAATGGGCCAGCTTAAAAGCATTCGGCG
CCTCACTGGAGCACATCGCCAGTAGCTCAGATGAGTGATTGAACTGGAGA
TCCGTGATGGCAGTCCGTAGGTTCATGAAGCGCTTCTCGGGTTGTGGGGC
CTTGGATGCGAAAATGCTCTCGTAGTCGTAGATGTTGACCACGCCCTCTT
GACTGCCGGTGGCCAGTAGGCGTTGGTTGGGAGACAGTTGAATGGACTCT
CCATGTATACAGCCGTCGTCCATGAAGATGTGCTCGATGAGGTTCTGGCG
CAGGTTCAGCACGCTGACATTGGAAGTGGAACCGCAGACGAGGATCCTCT
TGGAGTCACTAGACCATGTGAATCCCTTCACTTTGCCCTCCTGCTTGAAG
CTGTGCAGCAGCTCATTTGTTTTGGCCGTGAGCAGGTGAATGGCTCCAAA
CTTGCCAGCAGTGACGATAAATTTGCCACATGGAGACACCTCAAAGCGGT
GCATAAATTCCATTGCGCCCGGCAGCTTTAGCTTCGATTCCTTGGCTTCC
AGCAAGTCGTAGGAGTAGTAGAATGGTTTCACAGAACCAAAGAACGCCCT
TGTGCCGCATGGAGCAATTCTGGAGCACGCCAGCGGGAACTTCTTGAAGC
GCATGTTGTGCAACCTTTCGTTCTTTTGCCCATCCACGGCGTAGATGGTG
GCTAGGCCATTCATGCCCGCCACTAGAGCAGCAGTACTGGTTGGATGAAA
CTGAATGCTGGTGGCATTACCCTCGGCATATGTGGCCCTGTTCAGGTCTT
TGACCCGTT
BO04858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7989-PA | 1521 | l(2)k07824-RA | 578..1518 | 959..19 | 4705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wcd-RA | 1663 | CG7989-RA | 683..1623 | 959..19 | 4705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16345878..16346818 | 19..959 | 4705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:14:19 has no hits.
BO04858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:37 Download gff for
BO04858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7989-PA | 578..1521 | 15..959 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:41 Download gff for
BO04858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7989-PA | 578..1521 | 15..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:57 Download gff for
BO04858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wcd-RA | 683..1628 | 11..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:09:45 Download gff for
BO04858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wcd-RA | 683..1628 | 11..959 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:09:45 Download gff for
BO04858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16345873..16346818 | 11..959 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:57 Download gff for
BO04858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12233378..12234323 | 11..959 | 99 | | Plus |
BO04858.5prime Sequence
857 bp (753 high quality bases) assembled on 2005-11-29
> BO04858.5prime
GAAGTTATCAGTCGACATGAGTTCAGACGAGTCCAGCGACGGTTTGGAGG
AGCTGCAGAGTCTGAAGGCCCTCTACGGCCAGCAGGAGCAAGAGAAACCG
GCAAAGATCAAAAGGGAACGTTATATTCCAAAGGCCTCGCAGGCCAAGGA
GCTCAACTATGTGGAGGTGCCCATGGAAAAGGTGCTCTTCGGCGACAGGC
AGCGACTGCTCACCAATCTAGCCAAGTCCGTGGGACAAAAGTTGCCGAAC
GATGACGAAGACGAGCAGGAGGAAAATCCCGGCCAGGCAAAGCCAGGCGA
CAAGCGGAAAGCCGCCTGGTCGGATTCCGATGACGAGGACCTGCAGGTGG
GCGATGTCAAGAAGGCCACAAAGCACACGGGTCCACTGAACCACCTGCGC
AAGGATAAATCGTACAAGGAGTATCTTACGGCGCGATTCCAGCGCACGCT
TAACCAACCCAAGTGGGCGGAAAAGAAGGTCAAAAATGAGGACGACGAGG
ACGTATCCTCCGACGAAGAACTGCTGCGGACGGTTGGCTTTATCGATCGT
AAAGCCCGGAACAGTGATCTGCCCCAGAAGACTCTGAATTTTAAACGGGT
CAAAGACCTGAACAGGGCCACATATGCCGAGGGTAATGCCACCAGCATTC
AGTTTCATCCAACCAGTACTGCTGCTCTAGTGGCGGGCATGAATGGCCTA
GCCACCATCTACGCCGTGGATGGGCAAAAGAACGAAAGGTTGCACAACAT
GCGCTTNCAGAAGTTCCCGCTGGCGTGCTCCAGAATTGCTCCATGCGGCA
CAAGGGCGTTCTTTGGTTCTGTGAAACCATTCTACTACTCCTACGACTTG
CTGGAAG
BO04858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7989-PA | 1521 | l(2)k07824-RA | 1..841 | 17..857 | 4161 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wcd-RA | 1663 | CG7989-RA | 106..946 | 17..857 | 4179 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16346555..16347395 | 857..17 | 4179 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:30:22 has no hits.
BO04858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:37 Download gff for
BO04858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7989-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:43 Download gff for
BO04858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7989-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:57 Download gff for
BO04858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wcd-RA | 102..946 | 9..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:35:49 Download gff for
BO04858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wcd-RA | 102..946 | 9..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:35:49 Download gff for
BO04858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16346555..16347399 | 9..857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:57 Download gff for
BO04858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12234060..12234904 | 9..857 | 99 | | Minus |
BO04858.complete Sequence
1552 bp (1552 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629900
> BO04858.complete
GAAGTTATCAGTCGACATGAGTTCAGACGAGTCCAGCGACGGTTTGGAGG
AGCTGCAGAGTCTGAAGGCCCTCTACGGCCAGCAGGAGCAAGAGAAACCG
GCAAAGATCAAAAGGGAACGTTATATTCCAAAGGCCTCGCAGGCCAAGGA
GCTCAACTATGTGGAGGTGCCCATGGAAAAGGTGCTCTTCGGCGACAGGC
AGCGACTGCTCACCAATCTAGCCAAGTCCGTGGGACAAAAGTTGCCGAAC
GATGACGAAGACGAGCAGGAGGAAAATCCCGGCCAGGCAAAGCCAGGCGA
CAAGCGGAAAGCCGCCTGGTCGGATTCCGATGACGAGGACCTGCAGGTGG
GCGATGTCAAGAAGGCCACAAAGCACACGGGTCCACTGAACCACCTGCGC
AAGGATAAATCGTACAAGGAGTATCTTACGGCGCGATTCCAGCGCACGCT
TAACCAACCCAAGTGGGCGGAAAAGAAGGTCAAAAATGAGGACGACGAGG
ACGTATCCTCCGACGAAGAACTGCTGCGGACGGTTGGCTTTATCGATCGT
AAAGCCCGGAACAGTGATCTGCCCCAGAAGACTCTGAATTTTAAACGGGT
CAAAGACCTGAACAGGGCCACATATGCCGAGGGTAATGCCACCAGCATTC
AGTTTCATCCAACCAGTACTGCTGCTCTAGTGGCGGGCATGAATGGCCTA
GCCACCATCTACGCCGTGGATGGGCAAAAGAACGAAAGGTTGCACAACAT
GCGCTTCAAGAAGTTCCCGCTGGCGTGCTCCAGAATTGCTCCATGCGGCA
CAAGGGCGTTCTTTGGTTCTGTGAAACCATTCTACTACTCCTACGACTTG
CTGGAAGCCAAGGAATCGAAGCTAAAGCTGCCGGGCGCAATGGAATTTAT
GCACCGCTTTGAGGTGTCTCCATGTGGCAAATTTATCGTCACTGCTGGCA
AGTTTGGAGCCATTCACCTGCTCACGGCCAAAACAAATGAGCTGCTGCAC
AGCTTCAAGCAGGAGGGCAAAGTGAAGGGATTCACATGGTCTAGTGACTC
CAAGAGGATCCTCGTCTGCGGTTCCACTTCCAATGTCAGCGTGCTGAACC
TGCGCCAGAACCTCATCGAGCACATCTTCATGGACGACGGCTGTATACAT
GGAGAGTCCATTCAACTGTCTCCCAACCAACGCCTACTGGCCACCGGCAG
TCAAGAGGGCGTGGTCAACATCTACGACTACGAGAGCATTTTCGCATCCA
AGGCCCCACAACCCGAGAAGCGCTTCATGAACCTACGGACTGCCATCACG
GATCTCCAGTTCAATCACTCATCTGAGCTACTGGCGATGTGCTCCAGTGA
GGCGCCGAATGCTTTTAAGCTGGCCCATTTCCCCAGCGCCACTGTGTACT
CCAATTTCCCGGCACAGAACGAGAAGGTTGGCTTTGTGACCTCCATGGCC
TTTTCGCCGCACAGCAGCTTCCTGGCCTTTGCCACTAAGGGCAAACAGGT
GCCGCTCTTTAGGCTTAAGTACTTCAAGGGTTATGCAAGCTTTCTAGACC
AT
BO04858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:52:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wcd-RA | 1521 | CG7989-PA | 1..1518 | 17..1534 | 7590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:52:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wcd-RA | 1663 | CG7989-RA | 106..1623 | 17..1534 | 7590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:52:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16345878..16347395 | 1534..17 | 7590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:52:40 has no hits.
BO04858.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:15 Download gff for
BO04858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k07824-RA | 1..1521 | 17..1538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:03 Download gff for
BO04858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k07824-RA | 100..1626 | 9..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:07 Download gff for
BO04858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wcd-RA | 106..1623 | 17..1536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:15 Download gff for
BO04858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k07824-RA | 100..1626 | 9..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:58 Download gff for
BO04858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wcd-RA | 106..1623 | 17..1536 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:58 Download gff for
BO04858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16345876..16347395 | 17..1536 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:07 Download gff for
BO04858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12233381..12234900 | 17..1536 | 99 | | Minus |
BO04858.pep Sequence
Translation from 16 to 1552
> BO04858.pep
MSSDESSDGLEELQSLKALYGQQEQEKPAKIKRERYIPKASQAKELNYVE
VPMEKVLFGDRQRLLTNLAKSVGQKLPNDDEDEQEENPGQAKPGDKRKAA
WSDSDDEDLQVGDVKKATKHTGPLNHLRKDKSYKEYLTARFQRTLNQPKW
AEKKVKNEDDEDVSSDEELLRTVGFIDRKARNSDLPQKTLNFKRVKDLNR
ATYAEGNATSIQFHPTSTAALVAGMNGLATIYAVDGQKNERLHNMRFKKF
PLACSRIAPCGTRAFFGSVKPFYYSYDLLEAKESKLKLPGAMEFMHRFEV
SPCGKFIVTAGKFGAIHLLTAKTNELLHSFKQEGKVKGFTWSSDSKRILV
CGSTSNVSVLNLRQNLIEHIFMDDGCIHGESIQLSPNQRLLATGSQEGVV
NIYDYESIFASKAPQPEKRFMNLRTAITDLQFNHSSELLAMCSSEAPNAF
KLAHFPSATVYSNFPAQNEKVGFVTSMAFSPHSSFLAFATKGKQVPLFRL
KYFKGYASFLDH
BO04858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wcd-PA | 506 | CG7989-PA | 1..506 | 1..506 | 2623 | 100 | Plus |
