Clone BO04863 Report

Search the DGRC for BO04863

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG3876-RA
Protein status:BO04863.pep: validated full length
Sequenced Size:799

Clone Sequence Records

BO04863.3prime Sequence

797 bp (796 high quality bases) assembled on 2005-12-02

> BO04863.3prime
ATGGTCTAGAAAGCTTGCCGATTGTGATAGGTAGAGACCGTGCTTGGCAT
CACACACCACATTCAGGGCGTAGAAGTCCCAGTAGGAGGTCATGTGGAAC
CCCATGTTGGTCAGCACCACGATGTACTCGAACAACGCGAAGAAAGTATA
GACTCCCGCCTCGCAATGCGAGTTGTGCCTCACGAAGCAGTATCCTGCCA
AGCCAAAGGCGATCACATTCACCAAGAACAGATTTCTCTTGTACCTCAGC
GACTTCTCCTCGTGCGGCAAGAGCACGGTCTTCTGTATATTCCTGTTCAG
CAGGTAGGAAACCAGCATATAGCACTCGGAACACGCAATGAACACCACAA
ATGCGTTTCTGTGGGTCTCGTAATGATCCGCAGAGGTCCAAAACGACAAG
CAGAAGAGGGCCAGATCCTCCACGACGTTCAAGAAGCAGGCCAGGATGCC
CAGCAATCTTCTGCTCCGGCGGATGTGTTCCCGATAGTGCTCCAAGTAGA
TTTTGGCAACTGCCAAACGGAGTGGTAAATGCAGAAATATGGCCAGTCTC
CAGACGGTTTTTTGGGGCTCATAGTTCCCAATGGCCGCCGAGACGGAGGG
CAGATAGTTGGTCACATCGCAGTGGGTGTAGGTGCTCCTAACGAAGTCAA
AGGTCAGAGACCAAATCACGCAGAAGAAGAAGCCTCCCAGGGGCAAACTA
AGAGCCACCAGTGCCAGTCGCGCAAAGGGAAGCCGGAAGAGGACGCTTTT
GGGATCACTGAAGCGCTCGTAAGTAGGCAGCATGTCGACTGATAACT

BO04863.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-PA 768 CG3876-RA 1..765 783..19 3825 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-RA 1370 CG3876-RA 175..939 783..19 3825 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 818704..819334 153..783 3155 100 Plus
2L 23513712 2L 818510..818645 19..154 680 100 Plus
Blast to na_te.dros performed on 2015-02-04 19:30:30 has no hits.

BO04863.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:40 Download gff for BO04863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-PA 1..768 18..783 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:47 Download gff for BO04863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-PA 1..768 18..783 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:58 Download gff for BO04863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 170..939 19..789 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:35:56 Download gff for BO04863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 170..939 19..789 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:35:56 Download gff for BO04863.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 818510..818643 19..152 100 <- Plus
2L 818704..819339 153..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:58 Download gff for BO04863.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 818510..818643 19..152 100 <- Plus
arm_2L 818704..819339 153..789 99   Plus

BO04863.5prime Sequence

797 bp (796 high quality bases) assembled on 2005-12-02

> BO04863.5prime
GAAGTTATCAGTCGACATGCTGCCTACTTACGAGCGCTTCAGTGATCCCA
AAAGCGTCCTCTTCCGGCTTCCCTTTGCGCGACTGGCACTGGTGGCTCTT
AGTTTGCCCCTGGGAGGCTTCTTCTTCTGCGTGATTTGGTCTCTGACCTT
TGACTTCGTTAGGAGCACCTACACCCACTGCGATGTGACCAACTATCTGC
CCTCCGTCTCGGCGGCCATTGGGAACTATGAGCCCCAAAAAACCGTCTGG
AGACTGGCCATATTTCTGCATTTACCACTCCGTTTGGCAGTTGCCAAAAT
CTACTTGGAGCACTATCGGGAACACATCCGCCGGAGCAGAAGATTGCTGG
GCATCCTGGCCTGCTTCTTGAACGTCGTGGAGGATCTGGCCCTCTTCTGC
TTGTCGTTTTGGACCTCTGCGGATCATTACGAGACCCACAGAAACGCATT
TGTGGTGTTCATTGCGTGTTCCGAGTGCTATATGCTGGTTTCCTACCTGC
TGAACAGGAATATACAGAAGACCGTGCTCTTGCCGCACGAGGAGAAGTCG
CTGAGGTACAAGAGAAATCTGTTCTTGGTGAATGTGATCGCCTTTGGCTT
GGCAGGATACTGCTTCGTGAGGCACAACTCGCATTGCGAGGCGGGAGTCT
ATACTTTCTTCGCGTTGTTCGAGTACATCGTGGTGCTGACCAACATGGGG
TTCCACATGACCTCCTACTGGGACTTCTACGCCCTGAATGTGGTGTGTGA
TGCCAAGCACGGTCTCTACCTATCACAATCGGCAAGCTTTCTAGACC

BO04863.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-PA 768 CG3876-RA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-RA 1370 CG3876-RA 175..939 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 818704..819334 647..17 3155 100 Minus
2L 23513712 2L 818510..818645 781..646 680 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:13:51 has no hits.

BO04863.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:41 Download gff for BO04863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-PA 1..768 17..782 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:48 Download gff for BO04863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-PA 1..768 17..782 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:25 Download gff for BO04863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 170..939 11..781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:42:48 Download gff for BO04863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 170..939 11..781 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:42:48 Download gff for BO04863.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 818510..818643 648..781 100 <- Minus
2L 818704..819339 11..647 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:25 Download gff for BO04863.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 818510..818643 648..781 100 <- Minus
arm_2L 818704..819339 11..647 99   Minus

BO04863.complete Sequence

799 bp (799 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629901

> BO04863.complete
GAAGTTATCAGTCGACATGCTGCCTACTTACGAGCGCTTCAGTGATCCCA
AAAGCGTCCTCTTCCGGCTTCCCTTTGCGCGACTGGCACTGGTGGCTCTT
AGTTTGCCCCTGGGAGGCTTCTTCTTCTGCGTGATTTGGTCTCTGACCTT
TGACTTCGTTAGGAGCACCTACACCCACTGCGATGTGACCAACTATCTGC
CCTCCGTCTCGGCGGCCATTGGGAACTATGAGCCCCAAAAAACCGTCTGG
AGACTGGCCATATTTCTGCATTTACCACTCCGTTTGGCAGTTGCCAAAAT
CTACTTGGAGCACTATCGGGAACACATCCGCCGGAGCAGAAGATTGCTGG
GCATCCTGGCCTGCTTCTTGAACGTCGTGGAGGATCTGGCCCTCTTCTGC
TTGTCGTTTTGGACCTCTGCGGATCATTACGAGACCCACAGAAACGCATT
TGTGGTGTTCATTGCGTGTTCCGAGTGCTATATGCTGGTTTCCTACCTGC
TGAACAGGAATATACAGAAGACCGTGCTCTTGCCGCACGAGGAGAAGTCG
CTGAGGTACAAGAGAAATCTGTTCTTGGTGAATGTGATCGCCTTTGGCTT
GGCAGGATACTGCTTCGTGAGGCACAACTCGCATTGCGAGGCGGGAGTCT
ATACTTTCTTCGCGTTGTTCGAGTACATCGTGGTGCTGACCAACATGGGG
TTCCACATGACCTCCTACTGGGACTTCTACGCCCTGAATGTGGTGTGTGA
TGCCAAGCACGGTCTCTACCTATCACAATCGGCAAGCTTTCTAGACCAT

BO04863.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-RA 768 CG3876-PA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-RA 1370 CG3876-RA 175..939 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 818704..819334 647..17 3155 100 Minus
2L 23513712 2L 818510..818645 781..646 680 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:52:36 has no hits.

BO04863.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:58 Download gff for BO04863.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 1..768 17..782 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:21 Download gff for BO04863.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 154..923 11..781 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:21 Download gff for BO04863.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 175..939 17..783 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:59 Download gff for BO04863.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 154..923 11..781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:38 Download gff for BO04863.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 175..939 17..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:38 Download gff for BO04863.complete
Subject Subject Range Query Range Percent Splice Strand
2L 818508..818643 648..783 98 <- Minus
2L 818704..819334 17..647 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:21 Download gff for BO04863.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 818508..818643 648..783 98 <- Minus
arm_2L 818704..819334 17..647 100   Minus

BO04863.pep Sequence

Translation from 16 to 799

> BO04863.pep
MLPTYERFSDPKSVLFRLPFARLALVALSLPLGGFFFCVIWSLTFDFVRS
TYTHCDVTNYLPSVSAAIGNYEPQKTVWRLAIFLHLPLRLAVAKIYLEHY
REHIRRSRRLLGILACFLNVVEDLALFCLSFWTSADHYETHRNAFVVFIA
CSECYMLVSYLLNRNIQKTVLLPHEEKSLRYKRNLFLVNVIAFGLAGYCF
VRHNSHCEAGVYTFFALFEYIVVLTNMGFHMTSYWDFYALNVVCDAKHGL
YLSQSASFLDH

BO04863.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-PA 255 CG3876-PA 1..255 1..255 1360 100 Plus
CG7990-PA 325 CG7990-PA 75..299 20..237 336 33.5 Plus
CG15880-PA 263 CG15880-PA 25..262 16..254 214 28.8 Plus