Clone Sequence Records
BO04863.3prime Sequence
797 bp (796 high quality bases) assembled on 2005-12-02
> BO04863.3prime
ATGGTCTAGAAAGCTTGCCGATTGTGATAGGTAGAGACCGTGCTTGGCAT
CACACACCACATTCAGGGCGTAGAAGTCCCAGTAGGAGGTCATGTGGAAC
CCCATGTTGGTCAGCACCACGATGTACTCGAACAACGCGAAGAAAGTATA
GACTCCCGCCTCGCAATGCGAGTTGTGCCTCACGAAGCAGTATCCTGCCA
AGCCAAAGGCGATCACATTCACCAAGAACAGATTTCTCTTGTACCTCAGC
GACTTCTCCTCGTGCGGCAAGAGCACGGTCTTCTGTATATTCCTGTTCAG
CAGGTAGGAAACCAGCATATAGCACTCGGAACACGCAATGAACACCACAA
ATGCGTTTCTGTGGGTCTCGTAATGATCCGCAGAGGTCCAAAACGACAAG
CAGAAGAGGGCCAGATCCTCCACGACGTTCAAGAAGCAGGCCAGGATGCC
CAGCAATCTTCTGCTCCGGCGGATGTGTTCCCGATAGTGCTCCAAGTAGA
TTTTGGCAACTGCCAAACGGAGTGGTAAATGCAGAAATATGGCCAGTCTC
CAGACGGTTTTTTGGGGCTCATAGTTCCCAATGGCCGCCGAGACGGAGGG
CAGATAGTTGGTCACATCGCAGTGGGTGTAGGTGCTCCTAACGAAGTCAA
AGGTCAGAGACCAAATCACGCAGAAGAAGAAGCCTCCCAGGGGCAAACTA
AGAGCCACCAGTGCCAGTCGCGCAAAGGGAAGCCGGAAGAGGACGCTTTT
GGGATCACTGAAGCGCTCGTAAGTAGGCAGCATGTCGACTGATAACT
BO04863.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3876-PA | 768 | CG3876-RA | 1..765 | 783..19 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3876-RA | 1370 | CG3876-RA | 175..939 | 783..19 | 3825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 818704..819334 | 153..783 | 3155 | 100 | Plus |
2L | 23513712 | 2L | 818510..818645 | 19..154 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:30:30 has no hits.
BO04863.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:40 Download gff for
BO04863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-PA | 1..768 | 18..783 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:47 Download gff for
BO04863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-PA | 1..768 | 18..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:58 Download gff for
BO04863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 170..939 | 19..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:35:56 Download gff for
BO04863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 170..939 | 19..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:35:56 Download gff for
BO04863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 818510..818643 | 19..152 | 100 | <- | Plus |
2L | 818704..819339 | 153..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:58 Download gff for
BO04863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 818510..818643 | 19..152 | 100 | <- | Plus |
arm_2L | 818704..819339 | 153..789 | 99 | | Plus |
BO04863.5prime Sequence
797 bp (796 high quality bases) assembled on 2005-12-02
> BO04863.5prime
GAAGTTATCAGTCGACATGCTGCCTACTTACGAGCGCTTCAGTGATCCCA
AAAGCGTCCTCTTCCGGCTTCCCTTTGCGCGACTGGCACTGGTGGCTCTT
AGTTTGCCCCTGGGAGGCTTCTTCTTCTGCGTGATTTGGTCTCTGACCTT
TGACTTCGTTAGGAGCACCTACACCCACTGCGATGTGACCAACTATCTGC
CCTCCGTCTCGGCGGCCATTGGGAACTATGAGCCCCAAAAAACCGTCTGG
AGACTGGCCATATTTCTGCATTTACCACTCCGTTTGGCAGTTGCCAAAAT
CTACTTGGAGCACTATCGGGAACACATCCGCCGGAGCAGAAGATTGCTGG
GCATCCTGGCCTGCTTCTTGAACGTCGTGGAGGATCTGGCCCTCTTCTGC
TTGTCGTTTTGGACCTCTGCGGATCATTACGAGACCCACAGAAACGCATT
TGTGGTGTTCATTGCGTGTTCCGAGTGCTATATGCTGGTTTCCTACCTGC
TGAACAGGAATATACAGAAGACCGTGCTCTTGCCGCACGAGGAGAAGTCG
CTGAGGTACAAGAGAAATCTGTTCTTGGTGAATGTGATCGCCTTTGGCTT
GGCAGGATACTGCTTCGTGAGGCACAACTCGCATTGCGAGGCGGGAGTCT
ATACTTTCTTCGCGTTGTTCGAGTACATCGTGGTGCTGACCAACATGGGG
TTCCACATGACCTCCTACTGGGACTTCTACGCCCTGAATGTGGTGTGTGA
TGCCAAGCACGGTCTCTACCTATCACAATCGGCAAGCTTTCTAGACC
BO04863.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3876-PA | 768 | CG3876-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3876-RA | 1370 | CG3876-RA | 175..939 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 818704..819334 | 647..17 | 3155 | 100 | Minus |
2L | 23513712 | 2L | 818510..818645 | 781..646 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:13:51 has no hits.
BO04863.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:41 Download gff for
BO04863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-PA | 1..768 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:48 Download gff for
BO04863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-PA | 1..768 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:25 Download gff for
BO04863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 170..939 | 11..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:42:48 Download gff for
BO04863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 170..939 | 11..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:42:48 Download gff for
BO04863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 818510..818643 | 648..781 | 100 | <- | Minus |
2L | 818704..819339 | 11..647 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:25 Download gff for
BO04863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 818510..818643 | 648..781 | 100 | <- | Minus |
arm_2L | 818704..819339 | 11..647 | 99 | | Minus |
BO04863.complete Sequence
799 bp (799 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629901
> BO04863.complete
GAAGTTATCAGTCGACATGCTGCCTACTTACGAGCGCTTCAGTGATCCCA
AAAGCGTCCTCTTCCGGCTTCCCTTTGCGCGACTGGCACTGGTGGCTCTT
AGTTTGCCCCTGGGAGGCTTCTTCTTCTGCGTGATTTGGTCTCTGACCTT
TGACTTCGTTAGGAGCACCTACACCCACTGCGATGTGACCAACTATCTGC
CCTCCGTCTCGGCGGCCATTGGGAACTATGAGCCCCAAAAAACCGTCTGG
AGACTGGCCATATTTCTGCATTTACCACTCCGTTTGGCAGTTGCCAAAAT
CTACTTGGAGCACTATCGGGAACACATCCGCCGGAGCAGAAGATTGCTGG
GCATCCTGGCCTGCTTCTTGAACGTCGTGGAGGATCTGGCCCTCTTCTGC
TTGTCGTTTTGGACCTCTGCGGATCATTACGAGACCCACAGAAACGCATT
TGTGGTGTTCATTGCGTGTTCCGAGTGCTATATGCTGGTTTCCTACCTGC
TGAACAGGAATATACAGAAGACCGTGCTCTTGCCGCACGAGGAGAAGTCG
CTGAGGTACAAGAGAAATCTGTTCTTGGTGAATGTGATCGCCTTTGGCTT
GGCAGGATACTGCTTCGTGAGGCACAACTCGCATTGCGAGGCGGGAGTCT
ATACTTTCTTCGCGTTGTTCGAGTACATCGTGGTGCTGACCAACATGGGG
TTCCACATGACCTCCTACTGGGACTTCTACGCCCTGAATGTGGTGTGTGA
TGCCAAGCACGGTCTCTACCTATCACAATCGGCAAGCTTTCTAGACCAT
BO04863.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3876-RA | 768 | CG3876-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3876-RA | 1370 | CG3876-RA | 175..939 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 818704..819334 | 647..17 | 3155 | 100 | Minus |
2L | 23513712 | 2L | 818510..818645 | 781..646 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:52:36 has no hits.
BO04863.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:58 Download gff for
BO04863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 1..768 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:21 Download gff for
BO04863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 154..923 | 11..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:21 Download gff for
BO04863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 175..939 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:59 Download gff for
BO04863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 154..923 | 11..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:38 Download gff for
BO04863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 175..939 | 17..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:38 Download gff for
BO04863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 818508..818643 | 648..783 | 98 | <- | Minus |
2L | 818704..819334 | 17..647 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:21 Download gff for
BO04863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 818508..818643 | 648..783 | 98 | <- | Minus |
arm_2L | 818704..819334 | 17..647 | 100 | | Minus |
BO04863.pep Sequence
Translation from 16 to 799
> BO04863.pep
MLPTYERFSDPKSVLFRLPFARLALVALSLPLGGFFFCVIWSLTFDFVRS
TYTHCDVTNYLPSVSAAIGNYEPQKTVWRLAIFLHLPLRLAVAKIYLEHY
REHIRRSRRLLGILACFLNVVEDLALFCLSFWTSADHYETHRNAFVVFIA
CSECYMLVSYLLNRNIQKTVLLPHEEKSLRYKRNLFLVNVIAFGLAGYCF
VRHNSHCEAGVYTFFALFEYIVVLTNMGFHMTSYWDFYALNVVCDAKHGL
YLSQSASFLDH
BO04863.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3876-PA | 255 | CG3876-PA | 1..255 | 1..255 | 1360 | 100 | Plus |
CG7990-PA | 325 | CG7990-PA | 75..299 | 20..237 | 336 | 33.5 | Plus |
CG15880-PA | 263 | CG15880-PA | 25..262 | 16..254 | 214 | 28.8 | Plus |