Clone Sequence Records
BO04865.3prime Sequence
599 bp (598 high quality bases) assembled on 2005-12-02
> BO04865.3prime
ATGGTCTAGAAAGCTTGCGAGCATTTTACATTTAAATCTACGATTCGGCT
TGTTCATTTTGCGGCCCCTCCGCCCCTTGTTGTCCTTGTCCTTGCGGATT
TCGCGCACCAGTGTGTAAAATGCATCGTCCACGCCCATGCGCGTCTTGGC
GGATGTCTCAATGTATGGAATGCCGTACTGTTTGGCCACCTCTCTTGCCT
GCTCGTTGTTAACGTTCCACGAGGCCAGATCACATTTGTTGCCCACCAGC
ACCATGGGCACCTCTTCGGCATCCTTTACGCGCTTGATCTGCTCACGGTA
GGTGCCGATATCCTCGAAGGACTTCGCACTGTTGACGGCAAAGACCAGCA
GGAATCCCTCGCCAGTCCGCATATACTGATCCCGCATGGCCGAGTACTCC
TCTTGGCCGGCGGTGTCCAGGATGTCCAGCAGGCAGGTCTCTCCATCGAT
AACCACTTGCTTTCGGTAAGAGTCCTCGATTGTGGGGTCGTACTCGTCCA
CGAAATGGTTCTGGATTAGCTGGATGGTGAGCGCGGACTTGCCCACGCCT
CCGGCTCCAACGACGACCAGTTTGTATTCCGTCATGTCGACTGATAACT
BO04865.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9375-PA | 570 | Ras85D-RA | 1..567 | 585..19 | 2835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras85D-RA | 1958 | CG9375-RA | 442..1008 | 585..19 | 2835 | 100 | Minus |
R-RC | 2702 | CG1956-RC | 615..849 | 576..342 | 320 | 76.3 | Minus |
R-RB | 2872 | CG1956-RB | 785..1019 | 576..342 | 320 | 76.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:41:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9511737..9511997 | 187..447 | 1305 | 100 | Plus |
3R | 32079331 | 3R | 9511511..9511683 | 19..191 | 865 | 100 | Plus |
3R | 32079331 | 3R | 9512153..9512291 | 447..585 | 695 | 100 | Plus |
3L | 28110227 | 3L | 1860968..1861202 | 342..576 | 320 | 75.7 | Plus |
3L | 28110227 | 3L | 4140054..4140142 | 419..331 | 205 | 82 | Minus |
2R | 25286936 | 2R | 16109166..16109231 | 368..433 | 195 | 86.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:41:56 has no hits.
BO04865.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:44 Download gff for
BO04865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9375-PA | 1..570 | 15..585 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:52 Download gff for
BO04865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9375-PA | 1..570 | 15..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:46 Download gff for
BO04865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 435..1011 | 15..593 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:49 Download gff for
BO04865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 435..1011 | 15..593 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:49 Download gff for
BO04865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9511507..9511681 | 15..189 | 98 | <- | Plus |
3R | 9511740..9511996 | 190..446 | 100 | <- | Plus |
3R | 9512153..9512298 | 447..593 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:46 Download gff for
BO04865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5337229..5337403 | 15..189 | 98 | <- | Plus |
arm_3R | 5337462..5337718 | 190..446 | 100 | <- | Plus |
arm_3R | 5337875..5338020 | 447..593 | 97 | | Plus |
BO04865.5prime Sequence
599 bp (598 high quality bases) assembled on 2005-11-29
> BO04865.5prime
GAAGTTATCAGTCGACATGACGGAATACAAACTGGTCGTCGTTGGAGCCG
GAGGCGTGGGCAAGTCCGCGCTCACCATCCAGCTAATCCAGAACCATTTC
GTGGACGAGTACGACCCCACAATCGAGGACTCTTACCGAAAGCAAGTGGT
TATCGATGGAGAGACCTGCCTGCTGGACATCCTGGACACCGCCGGCCAAG
AGGAGTACTCGGCCATGCGGGATCAGTATATGCGGACTGGCGAGGGATTC
CTGCTGGTCTTTGCCGTCAACAGTGCGAAGTCCTTCGAGGATATCGGCAC
CTACCGTGAGCAGATCAAGCGCGTAAAGGATGCCGAAGAGGTGCCCATGG
TGCTGGTGGGCAACAAATGTGATCTGGCCTCGTGGAACGTTAACAACGAG
CAGGCAAGAGAGGTGGCCAAACAGTACGGCATTCCATACATTGAGACATC
CGCCAAGACGCGCATGGGCGTGGACGATGCATTTTACACACTGGTGCGCG
AAATCCGCAAGGACAAGGACAACAAGGGGCGGAGGGGCCGCAAAATGAAC
AAGCCGAATCGTAGATTTAAATGTAAAATGCTCGCAAGCTTTCTAGACC
BO04865.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9375-PA | 570 | Ras85D-RA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras85D-RA | 1958 | CG9375-RA | 442..1008 | 17..583 | 2835 | 100 | Plus |
R-RC | 2702 | CG1956-RC | 615..849 | 26..260 | 320 | 76.3 | Plus |
R-RB | 2872 | CG1956-RB | 785..1019 | 26..260 | 320 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9511737..9511997 | 415..155 | 1305 | 100 | Minus |
3R | 32079331 | 3R | 9511511..9511683 | 583..411 | 865 | 100 | Minus |
3R | 32079331 | 3R | 9512153..9512291 | 155..17 | 695 | 100 | Minus |
3L | 28110227 | 3L | 1860968..1861202 | 260..26 | 320 | 75.7 | Minus |
3L | 28110227 | 3L | 4140054..4140142 | 183..271 | 205 | 82 | Plus |
2R | 25286936 | 2R | 16109166..16109231 | 234..169 | 195 | 86.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:16:05 has no hits.
BO04865.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:45 Download gff for
BO04865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9375-PA | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:54 Download gff for
BO04865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9375-PA | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:08:02 Download gff for
BO04865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 435..1011 | 9..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:05 Download gff for
BO04865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 435..1011 | 9..587 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:05 Download gff for
BO04865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9511507..9511681 | 413..587 | 98 | <- | Minus |
3R | 9511740..9511996 | 156..412 | 100 | <- | Minus |
3R | 9512153..9512298 | 9..155 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:08:02 Download gff for
BO04865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5337229..5337403 | 413..587 | 98 | <- | Minus |
arm_3R | 5337462..5337718 | 156..412 | 100 | <- | Minus |
arm_3R | 5337875..5338020 | 9..155 | 97 | | Minus |
BO04865.complete Sequence
601 bp (601 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629902
> BO04865.complete
GAAGTTATCAGTCGACATGACGGAATACAAACTGGTCGTCGTTGGAGCCG
GAGGCGTGGGCAAGTCCGCGCTCACCATCCAGCTAATCCAGAACCATTTC
GTGGACGAGTACGACCCCACAATCGAGGACTCTTACCGAAAGCAAGTGGT
TATCGATGGAGAGACCTGCCTGCTGGACATCCTGGACACCGCCGGCCAAG
AGGAGTACTCGGCCATGCGGGATCAGTATATGCGGACTGGCGAGGGATTC
CTGCTGGTCTTTGCCGTCAACAGTGCGAAGTCCTTCGAGGATATCGGCAC
CTACCGTGAGCAGATCAAGCGCGTAAAGGATGCCGAAGAGGTGCCCATGG
TGCTGGTGGGCAACAAATGTGATCTGGCCTCGTGGAACGTTAACAACGAG
CAGGCAAGAGAGGTGGCCAAACAGTACGGCATTCCATACATTGAGACATC
CGCCAAGACGCGCATGGGCGTGGACGATGCATTTTACACACTGGTGCGCG
AAATCCGCAAGGACAAGGACAACAAGGGGCGGAGGGGCCGCAAAATGAAC
AAGCCGAATCGTAGATTTAAATGTAAAATGCTCGCAAGCTTTCTAGACCA
T
BO04865.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras85D-RA | 570 | CG9375-PA | 1..567 | 17..583 | 2835 | 100 | Plus |
R-RC | 555 | CG1956-PC | 10..244 | 26..260 | 320 | 75.7 | Plus |
R-RB | 555 | CG1956-PB | 10..244 | 26..260 | 320 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras85D-RA | 1958 | CG9375-RA | 442..1008 | 17..583 | 2835 | 100 | Plus |
R-RC | 2702 | CG1956-RC | 615..849 | 26..260 | 320 | 75.7 | Plus |
R-RB | 2872 | CG1956-RB | 785..1019 | 26..260 | 320 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9511737..9511997 | 415..155 | 1305 | 100 | Minus |
3R | 32079331 | 3R | 9511511..9511683 | 583..411 | 865 | 100 | Minus |
3R | 32079331 | 3R | 9512153..9512291 | 155..17 | 695 | 100 | Minus |
3L | 28110227 | 3L | 1860968..1861202 | 260..26 | 320 | 75.7 | Minus |
3L | 28110227 | 3L | 4140054..4140142 | 183..271 | 205 | 82 | Plus |
2R | 25286936 | 2R | 16109166..16109231 | 234..169 | 195 | 86.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:48:06 has no hits.
BO04865.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:53 Download gff for
BO04865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:30 Download gff for
BO04865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 432..1008 | 9..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:14 Download gff for
BO04865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 442..1008 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:54 Download gff for
BO04865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 432..1008 | 9..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:31 Download gff for
BO04865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 442..1008 | 17..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:31 Download gff for
BO04865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9511740..9511996 | 156..412 | 100 | <- | Minus |
3R | 9512153..9512291 | 17..155 | 100 | | Minus |
3R | 9511509..9511681 | 413..585 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:14 Download gff for
BO04865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5337231..5337403 | 413..585 | 98 | <- | Minus |
arm_3R | 5337462..5337718 | 156..412 | 100 | <- | Minus |
arm_3R | 5337875..5338013 | 17..155 | 100 | | Minus |
BO04865.pep Sequence
Translation from 16 to 601
> BO04865.pep
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET
CLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQI
KRVKDAEEVPMVLVGNKCDLASWNVNNEQAREVAKQYGIPYIETSAKTRM
GVDDAFYTLVREIRKDKDNKGRRGRKMNKPNRRFKCKMLASFLDH
BO04865.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras85D-PA | 189 | CG9375-PA | 1..189 | 1..189 | 977 | 100 | Plus |
R-PC | 184 | CG1956-PC | 1..178 | 1..182 | 515 | 54.1 | Plus |
R-PB | 184 | CG1956-PB | 1..178 | 1..182 | 515 | 54.1 | Plus |
R-PA | 184 | CG1956-PA | 1..178 | 1..182 | 515 | 54.1 | Plus |
Ras64B-PA | 192 | CG1167-PA | 3..168 | 1..165 | 513 | 62.7 | Plus |