Clone BO04866 Report

Search the DGRC for BO04866

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptMSBP-RA
Protein status:BO04866.pep: validated full length
Sequenced Size:778

Clone Sequence Records

BO04866.3prime Sequence

776 bp (775 high quality bases) assembled on 2005-12-02

> BO04866.3prime
ATGGTCTAGAAAGCTTGCACAGTCGGTAGAAGGAGTGGCCTGATCTTGTG
CGTTATTTTTGTTTGTTACATTGCTTTGCAAAATGTGACTTTCCTTTTCT
TGTTTGGTGTCATCAGTCTCAGTTTTCGACTTGGGTAGGTTCTTTCGCTC
TTGTTCATCATTGTTAACATTCTCCTCGTCCTCATCATCGTCATAGTTGG
TTGGTTCCTCGCCCTTGCGCAATAGCTTACCAACCAGCTCATATTTTTCC
TTAAACTGCATTTCCCATTCCCGCACAGAGTCCATTTCCACGGCACTTAA
ATCGCTCAGGTCATCGTATTCATCCTTGTCAATTGAAACCACGCTGAAAG
TGGCCAAGTTTCGCGAGGCATCTCTACCCGCAAAAGTTGCGTAGGGTCCA
CCTGGGCCGTAAAAACGCCTTCCTTTGCTGACATCGTAAACACTTCCGTT
GACGGCGACCAAAACACGGCCATCCGGCTGAGTTCCATCGTACTGGCGAA
GCTCCTTCACGGTAAAATCGCGTCGGATTTTGGGTAACTCAGGTTCGGAT
GGCTTTGCAACGCCCACGGATGGCACTTCGGTGCGATCCCGAACGATTTT
ATAGACCAGGAAGCAGATGATGGCCAGGAGGGCCAGGTTCATTGGACTGT
ACAGGATTTCGCGGATTATGTTGCCCAGAAATGAGGAATCATCGTTGTTT
AGATTGTTGCCGATTTCCTTGTCGTAGGCCGAACTAGGATCTGCACCCAC
TTTGGAATCCATGTCGACTGATAACT

BO04866.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9066-PA 747 CG9066-RA 1..744 762..19 3720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
MSBP-RC 1503 CG9066-RC 288..1031 762..19 3720 100 Minus
MSBP-RB 1420 CG9066-RB 205..948 762..19 3720 100 Minus
MSBP-RA 1487 CG9066-RA 272..1015 762..19 3720 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15889299..15889662 399..762 1820 100 Plus
X 23542271 X 15888039..15888269 19..249 1155 100 Plus
X 23542271 X 15888344..15888499 249..404 780 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:48:53 has no hits.

BO04866.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:46 Download gff for BO04866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9066-PA 1..747 18..762 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:55 Download gff for BO04866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9066-PA 1..747 18..762 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:55 Download gff for BO04866.3prime
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 272..1019 13..762 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:59 Download gff for BO04866.3prime
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 272..1019 13..762 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:59 Download gff for BO04866.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15888035..15888268 13..248 98 <- Plus
X 15888344..15888496 249..401 100 <- Plus
X 15889302..15889662 402..762 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:55 Download gff for BO04866.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15782068..15782301 13..248 98 <- Plus
arm_X 15782377..15782529 249..401 100 <- Plus
arm_X 15783335..15783695 402..762 100   Plus

BO04866.5prime Sequence

776 bp (775 high quality bases) assembled on 2005-11-29

> BO04866.5prime
GAAGTTATCAGTCGACATGGATTCCAAAGTGGGTGCAGATCCTAGTTCGG
CCTACGACAAGGAAATCGGCAACAATCTAAACAACGATGATTCCTCATTT
CTGGGCAACATAATCCGCGAAATCCTGTACAGTCCAATGAACCTGGCCCT
CCTGGCCATCATCTGCTTCCTGGTCTATAAAATCGTTCGGGATCGCACCG
AAGTGCCATCCGTGGGCGTTGCAAAGCCATCCGAACCTGAGTTACCCAAA
ATCCGACGCGATTTTACCGTGAAGGAGCTTCGCCAGTACGATGGAACTCA
GCCGGATGGCCGTGTTTTGGTCGCCGTCAACGGAAGTGTTTACGATGTCA
GCAAAGGAAGGCGTTTTTACGGCCCAGGTGGACCCTACGCAACTTTTGCG
GGTAGAGATGCCTCGCGAAACTTGGCCACTTTCAGCGTGGTTTCAATTGA
CAAGGATGAATACGATGACCTGAGCGATTTAAGTGCCGTGGAAATGGACT
CTGTGCGGGAATGGGAAATGCAGTTTAAGGAAAAATATGAGCTGGTTGGT
AAGCTATTGCGCAAGGGCGAGGAACCAACCAACTATGACGATGATGAGGA
CGAGGAGAATGTTAACAATGATGAACAAGAGCGAAAGAACCTACCCAAGT
CGAAAACTGAGACTGATGACACCAAACAAGAAAAGGAAAGTCACATTTTG
CAAAGCAATGTAACAAACAAAAATAACGCACAAGATCAGGCCACTCCTTC
TACCGACTGTGCAAGCTTTCTAGACC

BO04866.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9066-PA 747 CG9066-RA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
MSBP-RC 1503 CG9066-RC 288..1031 17..760 3720 100 Plus
MSBP-RB 1420 CG9066-RB 205..948 17..760 3720 100 Plus
MSBP-RA 1487 CG9066-RA 272..1015 17..760 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15889299..15889662 380..17 1820 100 Minus
X 23542271 X 15888039..15888269 760..530 1155 100 Minus
X 23542271 X 15888344..15888499 530..375 780 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:30:39 has no hits.

BO04866.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:47 Download gff for BO04866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9066-PA 1..747 17..761 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:57 Download gff for BO04866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9066-PA 1..747 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:59 Download gff for BO04866.5prime
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 272..1019 17..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:36:02 Download gff for BO04866.5prime
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 272..1019 17..766 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:36:02 Download gff for BO04866.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15888035..15888268 531..766 98 <- Minus
X 15888344..15888496 378..530 100 <- Minus
X 15889302..15889662 17..377 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:59 Download gff for BO04866.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15782068..15782301 531..766 98 <- Minus
arm_X 15782377..15782529 378..530 100 <- Minus
arm_X 15783335..15783695 17..377 100   Minus

BO04866.complete Sequence

778 bp (778 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629903

> BO04866.complete
GAAGTTATCAGTCGACATGGATTCCAAAGTGGGTGCAGATCCTAGTTCGG
CCTACGACAAGGAAATCGGCAACAATCTAAACAACGATGATTCCTCATTT
CTGGGCAACATAATCCGCGAAATCCTGTACAGTCCAATGAACCTGGCCCT
CCTGGCCATCATCTGCTTCCTGGTCTATAAAATCGTTCGGGATCGCACCG
AAGTGCCATCCGTGGGCGTTGCAAAGCCATCCGAACCTGAGTTACCCAAA
ATCCGACGCGATTTTACCGTGAAGGAGCTTCGCCAGTACGATGGAACTCA
GCCGGATGGCCGTGTTTTGGTCGCCGTCAACGGAAGTGTTTACGATGTCA
GCAAAGGAAGGCGTTTTTACGGCCCAGGTGGACCCTACGCAACTTTTGCG
GGTAGAGATGCCTCGCGAAACTTGGCCACTTTCAGCGTGGTTTCAATTGA
CAAGGATGAATACGATGACCTGAGCGATTTAAGTGCCGTGGAAATGGACT
CTGTGCGGGAATGGGAAATGCAGTTTAAGGAAAAATATGAGCTGGTTGGT
AAGCTATTGCGCAAGGGCGAGGAACCAACCAACTATGACGATGATGAGGA
CGAGGAGAATGTTAACAATGATGAACAAGAGCGAAAGAACCTACCCAAGT
CGAAAACTGAGACTGATGACACCAAACAAGAAAAGGAAAGTCACATTTTG
CAAAGCAATGTAACAAACAAAAATAACGCACAAGATCAGGCCACTCCTTC
TACCGACTGTGCAAGCTTTCTAGACCAT

BO04866.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
MSBP-RC 747 CG9066-PC 1..744 17..760 3720 100 Plus
MSBP-RB 747 CG9066-PB 1..744 17..760 3720 100 Plus
MSBP-RA 747 CG9066-PA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
MSBP-RC 1503 CG9066-RC 288..1031 17..760 3720 100 Plus
MSBP-RB 1420 CG9066-RB 205..948 17..760 3720 100 Plus
MSBP-RA 1487 CG9066-RA 272..1015 17..760 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15889299..15889662 380..17 1820 100 Minus
X 23542271 X 15888039..15888269 760..530 1155 100 Minus
X 23542271 X 15888344..15888499 530..375 780 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:10:11 has no hits.

BO04866.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:02 Download gff for BO04866.complete
Subject Subject Range Query Range Percent Splice Strand
CG9066-RA 1..747 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:46 Download gff for BO04866.complete
Subject Subject Range Query Range Percent Splice Strand
CG9066-RA 255..1002 17..766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:27:27 Download gff for BO04866.complete
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 272..1015 17..762 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:02 Download gff for BO04866.complete
Subject Subject Range Query Range Percent Splice Strand
CG9066-RA 255..1002 17..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:19 Download gff for BO04866.complete
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 272..1015 17..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:19 Download gff for BO04866.complete
Subject Subject Range Query Range Percent Splice Strand
X 15888035..15888268 531..762 99 <- Minus
X 15888344..15888496 378..530 100 <- Minus
X 15889302..15889662 17..377 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:27:27 Download gff for BO04866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15782068..15782301 531..762 99 <- Minus
arm_X 15782377..15782529 378..530 100 <- Minus
arm_X 15783335..15783695 17..377 100   Minus

BO04866.pep Sequence

Translation from 16 to 778

> BO04866.pep
MDSKVGADPSSAYDKEIGNNLNNDDSSFLGNIIREILYSPMNLALLAIIC
FLVYKIVRDRTEVPSVGVAKPSEPELPKIRRDFTVKELRQYDGTQPDGRV
LVAVNGSVYDVSKGRRFYGPGGPYATFAGRDASRNLATFSVVSIDKDEYD
DLSDLSAVEMDSVREWEMQFKEKYELVGKLLRKGEEPTNYDDDEDEENVN
NDEQERKNLPKSKTETDDTKQEKESHILQSNVTNKNNAQDQATPSTDCAS
FLDH

BO04866.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
MSBP-PC 248 CG9066-PC 1..248 1..248 1285 100 Plus
MSBP-PB 248 CG9066-PB 1..248 1..248 1285 100 Plus
MSBP-PA 248 CG9066-PA 1..248 1..248 1285 100 Plus
CG16957-PB 192 CG16957-PB 29..183 41..197 305 41.5 Plus
CG16957-PA 192 CG16957-PA 29..183 41..197 305 41.5 Plus