Clone Sequence Records
BO04866.3prime Sequence
776 bp (775 high quality bases) assembled on 2005-12-02
> BO04866.3prime
ATGGTCTAGAAAGCTTGCACAGTCGGTAGAAGGAGTGGCCTGATCTTGTG
CGTTATTTTTGTTTGTTACATTGCTTTGCAAAATGTGACTTTCCTTTTCT
TGTTTGGTGTCATCAGTCTCAGTTTTCGACTTGGGTAGGTTCTTTCGCTC
TTGTTCATCATTGTTAACATTCTCCTCGTCCTCATCATCGTCATAGTTGG
TTGGTTCCTCGCCCTTGCGCAATAGCTTACCAACCAGCTCATATTTTTCC
TTAAACTGCATTTCCCATTCCCGCACAGAGTCCATTTCCACGGCACTTAA
ATCGCTCAGGTCATCGTATTCATCCTTGTCAATTGAAACCACGCTGAAAG
TGGCCAAGTTTCGCGAGGCATCTCTACCCGCAAAAGTTGCGTAGGGTCCA
CCTGGGCCGTAAAAACGCCTTCCTTTGCTGACATCGTAAACACTTCCGTT
GACGGCGACCAAAACACGGCCATCCGGCTGAGTTCCATCGTACTGGCGAA
GCTCCTTCACGGTAAAATCGCGTCGGATTTTGGGTAACTCAGGTTCGGAT
GGCTTTGCAACGCCCACGGATGGCACTTCGGTGCGATCCCGAACGATTTT
ATAGACCAGGAAGCAGATGATGGCCAGGAGGGCCAGGTTCATTGGACTGT
ACAGGATTTCGCGGATTATGTTGCCCAGAAATGAGGAATCATCGTTGTTT
AGATTGTTGCCGATTTCCTTGTCGTAGGCCGAACTAGGATCTGCACCCAC
TTTGGAATCCATGTCGACTGATAACT
BO04866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9066-PA | 747 | CG9066-RA | 1..744 | 762..19 | 3720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MSBP-RC | 1503 | CG9066-RC | 288..1031 | 762..19 | 3720 | 100 | Minus |
MSBP-RB | 1420 | CG9066-RB | 205..948 | 762..19 | 3720 | 100 | Minus |
MSBP-RA | 1487 | CG9066-RA | 272..1015 | 762..19 | 3720 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15889299..15889662 | 399..762 | 1820 | 100 | Plus |
X | 23542271 | X | 15888039..15888269 | 19..249 | 1155 | 100 | Plus |
X | 23542271 | X | 15888344..15888499 | 249..404 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:48:53 has no hits.
BO04866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:46 Download gff for
BO04866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9066-PA | 1..747 | 18..762 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:55 Download gff for
BO04866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9066-PA | 1..747 | 18..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:55 Download gff for
BO04866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MSBP-RA | 272..1019 | 13..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:59 Download gff for
BO04866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MSBP-RA | 272..1019 | 13..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:59 Download gff for
BO04866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15888035..15888268 | 13..248 | 98 | <- | Plus |
X | 15888344..15888496 | 249..401 | 100 | <- | Plus |
X | 15889302..15889662 | 402..762 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:55 Download gff for
BO04866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15782068..15782301 | 13..248 | 98 | <- | Plus |
arm_X | 15782377..15782529 | 249..401 | 100 | <- | Plus |
arm_X | 15783335..15783695 | 402..762 | 100 | | Plus |
BO04866.5prime Sequence
776 bp (775 high quality bases) assembled on 2005-11-29
> BO04866.5prime
GAAGTTATCAGTCGACATGGATTCCAAAGTGGGTGCAGATCCTAGTTCGG
CCTACGACAAGGAAATCGGCAACAATCTAAACAACGATGATTCCTCATTT
CTGGGCAACATAATCCGCGAAATCCTGTACAGTCCAATGAACCTGGCCCT
CCTGGCCATCATCTGCTTCCTGGTCTATAAAATCGTTCGGGATCGCACCG
AAGTGCCATCCGTGGGCGTTGCAAAGCCATCCGAACCTGAGTTACCCAAA
ATCCGACGCGATTTTACCGTGAAGGAGCTTCGCCAGTACGATGGAACTCA
GCCGGATGGCCGTGTTTTGGTCGCCGTCAACGGAAGTGTTTACGATGTCA
GCAAAGGAAGGCGTTTTTACGGCCCAGGTGGACCCTACGCAACTTTTGCG
GGTAGAGATGCCTCGCGAAACTTGGCCACTTTCAGCGTGGTTTCAATTGA
CAAGGATGAATACGATGACCTGAGCGATTTAAGTGCCGTGGAAATGGACT
CTGTGCGGGAATGGGAAATGCAGTTTAAGGAAAAATATGAGCTGGTTGGT
AAGCTATTGCGCAAGGGCGAGGAACCAACCAACTATGACGATGATGAGGA
CGAGGAGAATGTTAACAATGATGAACAAGAGCGAAAGAACCTACCCAAGT
CGAAAACTGAGACTGATGACACCAAACAAGAAAAGGAAAGTCACATTTTG
CAAAGCAATGTAACAAACAAAAATAACGCACAAGATCAGGCCACTCCTTC
TACCGACTGTGCAAGCTTTCTAGACC
BO04866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9066-PA | 747 | CG9066-RA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MSBP-RC | 1503 | CG9066-RC | 288..1031 | 17..760 | 3720 | 100 | Plus |
MSBP-RB | 1420 | CG9066-RB | 205..948 | 17..760 | 3720 | 100 | Plus |
MSBP-RA | 1487 | CG9066-RA | 272..1015 | 17..760 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15889299..15889662 | 380..17 | 1820 | 100 | Minus |
X | 23542271 | X | 15888039..15888269 | 760..530 | 1155 | 100 | Minus |
X | 23542271 | X | 15888344..15888499 | 530..375 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:30:39 has no hits.
BO04866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:47 Download gff for
BO04866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9066-PA | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:57 Download gff for
BO04866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9066-PA | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:59 Download gff for
BO04866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MSBP-RA | 272..1019 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:36:02 Download gff for
BO04866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MSBP-RA | 272..1019 | 17..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:36:02 Download gff for
BO04866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15888035..15888268 | 531..766 | 98 | <- | Minus |
X | 15888344..15888496 | 378..530 | 100 | <- | Minus |
X | 15889302..15889662 | 17..377 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:59 Download gff for
BO04866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15782068..15782301 | 531..766 | 98 | <- | Minus |
arm_X | 15782377..15782529 | 378..530 | 100 | <- | Minus |
arm_X | 15783335..15783695 | 17..377 | 100 | | Minus |
BO04866.complete Sequence
778 bp (778 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629903
> BO04866.complete
GAAGTTATCAGTCGACATGGATTCCAAAGTGGGTGCAGATCCTAGTTCGG
CCTACGACAAGGAAATCGGCAACAATCTAAACAACGATGATTCCTCATTT
CTGGGCAACATAATCCGCGAAATCCTGTACAGTCCAATGAACCTGGCCCT
CCTGGCCATCATCTGCTTCCTGGTCTATAAAATCGTTCGGGATCGCACCG
AAGTGCCATCCGTGGGCGTTGCAAAGCCATCCGAACCTGAGTTACCCAAA
ATCCGACGCGATTTTACCGTGAAGGAGCTTCGCCAGTACGATGGAACTCA
GCCGGATGGCCGTGTTTTGGTCGCCGTCAACGGAAGTGTTTACGATGTCA
GCAAAGGAAGGCGTTTTTACGGCCCAGGTGGACCCTACGCAACTTTTGCG
GGTAGAGATGCCTCGCGAAACTTGGCCACTTTCAGCGTGGTTTCAATTGA
CAAGGATGAATACGATGACCTGAGCGATTTAAGTGCCGTGGAAATGGACT
CTGTGCGGGAATGGGAAATGCAGTTTAAGGAAAAATATGAGCTGGTTGGT
AAGCTATTGCGCAAGGGCGAGGAACCAACCAACTATGACGATGATGAGGA
CGAGGAGAATGTTAACAATGATGAACAAGAGCGAAAGAACCTACCCAAGT
CGAAAACTGAGACTGATGACACCAAACAAGAAAAGGAAAGTCACATTTTG
CAAAGCAATGTAACAAACAAAAATAACGCACAAGATCAGGCCACTCCTTC
TACCGACTGTGCAAGCTTTCTAGACCAT
BO04866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MSBP-RC | 747 | CG9066-PC | 1..744 | 17..760 | 3720 | 100 | Plus |
MSBP-RB | 747 | CG9066-PB | 1..744 | 17..760 | 3720 | 100 | Plus |
MSBP-RA | 747 | CG9066-PA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MSBP-RC | 1503 | CG9066-RC | 288..1031 | 17..760 | 3720 | 100 | Plus |
MSBP-RB | 1420 | CG9066-RB | 205..948 | 17..760 | 3720 | 100 | Plus |
MSBP-RA | 1487 | CG9066-RA | 272..1015 | 17..760 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15889299..15889662 | 380..17 | 1820 | 100 | Minus |
X | 23542271 | X | 15888039..15888269 | 760..530 | 1155 | 100 | Minus |
X | 23542271 | X | 15888344..15888499 | 530..375 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:10:11 has no hits.
BO04866.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:02 Download gff for
BO04866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9066-RA | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:46 Download gff for
BO04866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9066-RA | 255..1002 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:27:27 Download gff for
BO04866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MSBP-RA | 272..1015 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:02 Download gff for
BO04866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9066-RA | 255..1002 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:19 Download gff for
BO04866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MSBP-RA | 272..1015 | 17..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:19 Download gff for
BO04866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15888035..15888268 | 531..762 | 99 | <- | Minus |
X | 15888344..15888496 | 378..530 | 100 | <- | Minus |
X | 15889302..15889662 | 17..377 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:27:27 Download gff for
BO04866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15782068..15782301 | 531..762 | 99 | <- | Minus |
arm_X | 15782377..15782529 | 378..530 | 100 | <- | Minus |
arm_X | 15783335..15783695 | 17..377 | 100 | | Minus |
BO04866.pep Sequence
Translation from 16 to 778
> BO04866.pep
MDSKVGADPSSAYDKEIGNNLNNDDSSFLGNIIREILYSPMNLALLAIIC
FLVYKIVRDRTEVPSVGVAKPSEPELPKIRRDFTVKELRQYDGTQPDGRV
LVAVNGSVYDVSKGRRFYGPGGPYATFAGRDASRNLATFSVVSIDKDEYD
DLSDLSAVEMDSVREWEMQFKEKYELVGKLLRKGEEPTNYDDDEDEENVN
NDEQERKNLPKSKTETDDTKQEKESHILQSNVTNKNNAQDQATPSTDCAS
FLDH
BO04866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MSBP-PC | 248 | CG9066-PC | 1..248 | 1..248 | 1285 | 100 | Plus |
MSBP-PB | 248 | CG9066-PB | 1..248 | 1..248 | 1285 | 100 | Plus |
MSBP-PA | 248 | CG9066-PA | 1..248 | 1..248 | 1285 | 100 | Plus |
CG16957-PB | 192 | CG16957-PB | 29..183 | 41..197 | 305 | 41.5 | Plus |
CG16957-PA | 192 | CG16957-PA | 29..183 | 41..197 | 305 | 41.5 | Plus |