Clone Sequence Records
BO04867.3prime Sequence
901 bp (869 high quality bases) assembled on 2005-12-02
> BO04867.3prime
ATGGTCTAGAAAGCTTGCTGGTTTCGCATTCTTCTCCTCAGAGAAATCCA
AATCCTCTTTAATTGCCTTCGATCGTCGCTTTTCGTTTGACGTTAGCAAT
TGTGAGAGCTTCGTTTGTTTAGCTAGATCGTAGGCTTCTTTTTTACTCCG
CATTGCACAGTCTTCCAGGGTTTCGGCCGCTTCAAACATGCCTTGACGTC
GGTAAAGTGCTCCCAGATTTTTTAGAGTGGTTGTGACCGTGGGCGAATCC
ACTTTAGCGGCCTTATGCCAACCGCCGTACTCGCCATATGGAGTGTTCTC
CCTGTTATCGAATTTGTGCTCCTCACGCTCCTCAGCCACCTGCCAAATGG
GCTTGTTTTTGCTGTCGATGGCTCCAAACTCACGTTCGTGGGCTCGCGTC
AAGACCTGCTTATAGAGGATTTCAGCTTCGGTGTATCTACCTTGCTTCAG
ATAGCAGCCGGCCAGATTATTCTTTGTCTTGGCCACGTTGGGATCATCGG
GACCCAACTTTGATTCGTAGATGTCGAGAGCTCGCTGGTAGTACTTCTCA
ACCTCGTCGTATTTGCCCTGATTCTGGCAGAGCAGGGCGAGATTGTTAAG
TTGCTTGGCAACATCGGGATGATCCTTTCCCAGGACTTTCTCTCGGATCT
CCAAGGCACGCTTGCACAGTGGCTCGGCATCTTTGTACTTGCCACGTTTG
CCATAGAGGACGGCCAAGTTGTTCAACGTGGCCGCCACGGCTGGATGGTT
CTCGCCCAGTGTCTTTCCTCGAATCGACAGAGCGTCGTTGAGTAAATTGG
CGGCCTCCTTATACTTGTTCTGATCGCGGTACACGAGAGCCAAAATGTTC
AGCATGGTTGCTACATCGGGATGGTCGTGACCACTTTGTCTTTCGAGATC
T
BO04867.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5433-PA | 1527 | Klc-RA | 657..1524 | 886..19 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klc-RB | 1841 | CG5433-RB | 759..1641 | 901..19 | 4370 | 99.8 | Minus |
| Klc-RA | 1843 | CG5433-RA | 761..1643 | 901..19 | 4370 | 99.8 | Minus |
| Klc-RC | 1876 | CG5433-RC | 797..1676 | 901..19 | 4315 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12747273..12747757 | 338..822 | 2425 | 100 | Plus |
| 3L | 28110227 | 3L | 12746898..12747206 | 34..342 | 1545 | 100 | Plus |
| 3L | 28110227 | 3L | 12747821..12747902 | 820..901 | 365 | 96.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:48:59 has no hits.
BO04867.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:47 Download gff for
BO04867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klc-PA | 642..1527 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:58 Download gff for
BO04867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5433-PA | 642..1527 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:58 Download gff for
BO04867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klc-RA | 761..1646 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:19:20 Download gff for
BO04867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klc-RA | 761..1646 | 15..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:19:20 Download gff for
BO04867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12746898..12747203 | 34..339 | 100 | <- | Plus |
| 3L | 12747275..12747754 | 340..819 | 100 | <- | Plus |
| 3L | 12747821..12747902 | 820..901 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:58 Download gff for
BO04867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12739998..12740303 | 34..339 | 100 | <- | Plus |
| arm_3L | 12740375..12740854 | 340..819 | 100 | <- | Plus |
| arm_3L | 12740921..12741002 | 820..901 | 97 | | Plus |
BO04867.5prime Sequence
892 bp (805 high quality bases) assembled on 2005-11-29
> BO04867.5prime
GAAGTTATCAGTCGACATGACGCAAATGTCGCAGGACGAAATCATAACCA
ATACGAAAACAGTCCTTCAAGGCCTCGAAGCCTTGCGAGTGGAGCATGTT
TCGATTATGAACGGAATCGCCGAGGTGCAGAAGGACAATGAAAAGTCGGA
CATGCTGCGAAAGAACATCGAGAACATCGAACTGGGCCTCAGCGAGGCCC
AGGTGATGATGGCCCTGACATCCCATCTGCAGAACATCGAGGCCGAGAAG
CACAAGCTTAAGACACAGGTGCGCCGCCTCCACCAGGAGAACGCCTGGCT
TCGCGACGAGCTGGCCAACACTCAGCAAAAGTTCCAGGCATCCGAGCAGC
TGGTGGCCCAACTAGAGGAGGAGAAGAAGCACCTGGAGTTCATGGCGTCC
GTGAAGAAGTACGACGAGAATCAGGAGCAGGACGACGCTTGCGACAAGTC
CCGCACCGATCCCGTGGTCGAGCTATTCCCGGACGAGGAAAACGAGGACA
GACACAACATGTCGCCCACTCCGCCCAGCCAGTTCGCCAACCAGACTTCC
GGCTACGAGATTCCAGCGCGTCTCCGTACTCTGCACAACCTGGTCATTCA
GTATGCATCGCAGGGAAGATACGAGGTAGCCGTTCCCCTCTGCAAGCAAG
CATTGGAAGATCTCGAAAGGACAAGTGGTCACGACCATCCCGATGTAGCA
ACCATGCTGAACATTTTGGCTCTCGTGTACCGCGATCAGAACAAGTATAA
GGAGGCCGCCAATTTACTCAACGACGCTCTGTCGATTCGAGGAAAGACAC
TGGGCGAGAACCATCCAGCCGTGGCGGCCACGTTGAACAACTTGGCCGTC
CTCTATGGCAAACGTGGCAAGTACAAAGATGCCGAGCCACTG
BO04867.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5433-PA | 1527 | Klc-RA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klc-RC | 1876 | CG5433-RC | 156..1031 | 17..892 | 4380 | 100 | Plus |
| Klc-RB | 1841 | CG5433-RB | 118..993 | 17..892 | 4380 | 100 | Plus |
| Klc-RA | 1843 | CG5433-RA | 120..995 | 17..892 | 4380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12748056..12748657 | 618..17 | 3010 | 100 | Minus |
| 3L | 28110227 | 3L | 12747602..12747757 | 892..737 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 12747821..12747943 | 739..617 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:32:36 has no hits.
BO04867.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:48 Download gff for
BO04867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klc-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:28:59 Download gff for
BO04867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5433-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:38 Download gff for
BO04867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klc-RA | 111..995 | 7..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:11 Download gff for
BO04867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klc-RA | 111..995 | 7..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:11 Download gff for
BO04867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12747602..12747754 | 740..892 | 100 | <- | Minus |
| 3L | 12747821..12747941 | 619..739 | 100 | <- | Minus |
| 3L | 12748056..12748666 | 7..618 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:38 Download gff for
BO04867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12740921..12741041 | 619..739 | 100 | <- | Minus |
| arm_3L | 12740702..12740854 | 740..892 | 100 | <- | Minus |
| arm_3L | 12741156..12741766 | 7..618 | 99 | | Minus |
BO04867.complete Sequence
1558 bp (1558 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629904
> BO04867.complete
GAAGTTATCAGTCGACATGACGCAAATGTCGCAGGACGAAATCATAACCA
ATACGAAAACAGTCCTTCAAGGCCTCGAAGCCTTGCGAGTGGAGCATGTT
TCGATTATGAACGGAATCGCCGAGGTGCAGAAGGACAATGAAAAGTCGGA
CATGCTGCGAAAGAACATCGAGAACATCGAACTGGGCCTCAGCGAGGCCC
AGGTGATGATGGCCCTGACATCCCATCTGCAGAACATCGAGGCCGAGAAG
CACAAGCTTAAGACACAGGTGCGCCGCCTCCACCAGGAGAACGCCTGGCT
TCGCGACGAGCTGGCCAACACTCAGCAAAAGTTCCAGGCATCCGAGCAGC
TGGTGGCCCAACTAGAGGAGGAGAAGAAGCACCTGGAGTTCATGGCGTCC
GTGAAGAAGTACGACGAGAATCAGGAGCAGGACGACGCTTGCGACAAGTC
CCGCACCGATCCCGTGGTCGAGCTATTCCCGGACGAGGAAAACGAGGACA
GACACAACATGTCGCCCACTCCGCCCAGCCAGTTCGCCAACCAGACTTCC
GGCTACGAGATTCCAGCGCGTCTCCGTACTCTGCACAACCTGGTCATTCA
GTATGCATCGCAGGGAAGATACGAGGTAGCCGTTCCCCTCTGCAAGCAAG
CATTGGAAGATCTCGAAAGGACAAGTGGTCACGACCATCCCGATGTAGCA
ACCATGCTGAACATTTTGGCTCTCGTGTACCGCGATCAGAACAAGTATAA
GGAGGCCGCCAATTTACTCAACGACGCTCTGTCGATTCGAGGAAAGACAC
TGGGCGAGAACCATCCAGCCGTGGCGGCCACGTTGAACAACTTGGCCGTC
CTCTATGGCAAACGTGGCAAGTACAAAGATGCCGAGCCACTGTGCAAGCG
TGCCTTGGAGATCCGAGAGAAAGTCCTGGGAAAGGATCATCCCGATGTTG
CCAAGCAACTTAACAATCTCGCCCTGCTCTGCCAGAATCAGGGCAAATAC
GACGAGGTTGAGAAGTACTACCAGCGAGCTCTCGACATCTACGAATCAAA
GTTGGGTCCCGATGATCCCAACGTGGCCAAGACAAAGAATAATCTGGCCG
GCTGCTATCTGAAGCAAGGTAGATACACCGAAGCTGAAATCCTCTATAAG
CAGGTCTTGACGCGAGCCCACGAACGTGAGTTTGGAGCCATCGACAGCAA
AAACAAGCCCATTTGGCAGGTGGCTGAGGAGCGTGAGGAGCACAAATTCG
ATAACAGGGAGAACACTCCATATGGCGAGTACGGCGGTTGGCATAAGGCC
GCTAAAGTGGATTCGCCCACGGTCACAACCACTCTAAAAAATCTGGGAGC
ACTTTACCGACGTCAAGGCATGTTTGAAGCGGCCGAAACCCTGGAAGACT
GTGCAATGCGGAGTAAAAAAGAAGCCTACGATCTAGCTAAACAAACGAAG
CTCTCACAATTGCTAACGTCAAACGAAAAGCGACGATCGAAGGCAATTAA
AGAGGATTTGGATTTCTCTGAGGAGAAGAATGCGAAACCAGCAAGCTTTC
TAGACCAT
BO04867.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klc-RB | 1527 | CG5433-PB | 1..1524 | 17..1540 | 7620 | 100 | Plus |
| Klc-RA | 1527 | CG5433-PA | 1..1524 | 17..1540 | 7620 | 100 | Plus |
| Klc-RC | 1524 | CG5433-PC | 1..1511 | 17..1527 | 7555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klc-RB | 1841 | CG5433-RB | 118..1641 | 17..1540 | 7620 | 100 | Plus |
| Klc-RA | 1843 | CG5433-RA | 120..1643 | 17..1540 | 7620 | 100 | Plus |
| Klc-RC | 1876 | CG5433-RC | 156..1666 | 17..1527 | 7555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12748056..12748657 | 618..17 | 3010 | 100 | Minus |
| 3L | 28110227 | 3L | 12747273..12747757 | 1221..737 | 2425 | 100 | Minus |
| 3L | 28110227 | 3L | 12746898..12747206 | 1525..1217 | 1545 | 100 | Minus |
| 3L | 28110227 | 3L | 12747821..12747943 | 739..617 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:06:11 has no hits.
BO04867.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:03 Download gff for
BO04867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klc-RA | 1..1527 | 17..1544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:48 Download gff for
BO04867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klc-RA | 111..1646 | 7..1544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:49 Download gff for
BO04867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klc-RA | 120..1643 | 17..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:04 Download gff for
BO04867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klc-RA | 111..1646 | 7..1544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:51 Download gff for
BO04867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klc-RA | 120..1643 | 17..1542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:51 Download gff for
BO04867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12746898..12747203 | 1220..1525 | 100 | <- | Minus |
| 3L | 12747275..12747754 | 740..1219 | 100 | <- | Minus |
| 3L | 12747821..12747941 | 619..739 | 100 | <- | Minus |
| 3L | 12748056..12748657 | 17..618 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:49 Download gff for
BO04867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12739998..12740303 | 1220..1525 | 100 | <- | Minus |
| arm_3L | 12740375..12740854 | 740..1219 | 100 | <- | Minus |
| arm_3L | 12740921..12741041 | 619..739 | 100 | <- | Minus |
| arm_3L | 12741156..12741757 | 17..618 | 100 | | Minus |
BO04867.pep Sequence
Translation from 16 to 1558
> BO04867.pep
MTQMSQDEIITNTKTVLQGLEALRVEHVSIMNGIAEVQKDNEKSDMLRKN
IENIELGLSEAQVMMALTSHLQNIEAEKHKLKTQVRRLHQENAWLRDELA
NTQQKFQASEQLVAQLEEEKKHLEFMASVKKYDENQEQDDACDKSRTDPV
VELFPDEENEDRHNMSPTPPSQFANQTSGYEIPARLRTLHNLVIQYASQG
RYEVAVPLCKQALEDLERTSGHDHPDVATMLNILALVYRDQNKYKEAANL
LNDALSIRGKTLGENHPAVAATLNNLAVLYGKRGKYKDAEPLCKRALEIR
EKVLGKDHPDVAKQLNNLALLCQNQGKYDEVEKYYQRALDIYESKLGPDD
PNVAKTKNNLAGCYLKQGRYTEAEILYKQVLTRAHEREFGAIDSKNKPIW
QVAEEREEHKFDNRENTPYGEYGGWHKAAKVDSPTVTTTLKNLGALYRRQ
GMFEAAETLEDCAMRSKKEAYDLAKQTKLSQLLTSNEKRRSKAIKEDLDF
SEEKNAKPASFLDH
BO04867.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klc-PB | 508 | CG5433-PB | 1..508 | 1..508 | 2623 | 100 | Plus |
| Klc-PA | 508 | CG5433-PA | 1..508 | 1..508 | 2623 | 100 | Plus |
| Klc-PC | 507 | CG5433-PC | 1..507 | 1..508 | 2606 | 99.8 | Plus |
