Clone BO04869 Report

Search the DGRC for BO04869

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptPka-C1-RB
Protein status:BO04869.pep: validated full length
Sequenced Size:1093

Clone Sequence Records

BO04869.3prime Sequence

874 bp (763 high quality bases) assembled on 2005-12-02

> BO04869.3prime
ATGGTCTAGAAAGCTTGCGAATTCAGCAAACTCCTTGGCACACTTCTCGG
TGCTGGAGATCCGCAGCGCCTCCTCCTCGTAGTCATCGAAATTGCTCGTG
TCGCCGGGACCCTTACACCGCGGAATGAACGGCGCCTCGATTTTCTTTTG
GAAGATCGCAATCCAGTCGGTGGAGGCGAACCACTTCTGGTTCTTAATAT
CATTGACGCCCGCCTTCAGATTGCCGTAGCGCTTGGTCAGATCCACCTGC
AGCAGGTTGCGCAGTAGGTCCTTCAGATCGGAGCCAAAGTGCGATGGGAA
GCGCACCTTGCCGGAGACGATCTTCTCGTAGATCTGAATCGGCTGATCCG
CAAAGAACGGCGGATAGCCGGCGGCCATTTCGTAGACGAGTACGCCCAAC
GCCCACCAGTCCACGGCCTTGTTATAGCCCTTGGACAGAATGATCTCCGG
GGCCAGGTATTCGGGCGTGCCGCACAGTGTCCAGGTGCGTCCCTTGACCC
GCTTGGCAAAACCGAAGTCCGTCACCTTGAGGTAGCCCTGCGAGTCAATC
AGCAGATTCTCCGGCTTCAGATCACGGTAGATGAGGTCCAAGTAGTGCAG
GTACTCGAAGGCCAGCACGATTTGCGCCGCGTAGAAGCGCGAGTGCGGCT
CCGAGAAGCGGCCCACCTTGCGCAGGTGGGAGAACATCTCGCCACCGGGA
ACATACTCCAGCACCATGTAAAGGTTGGAGTTGTCCTTGAAGTGGTAGCG
CAGCGAGACGAGGAAGGGGAACTGAATGGCCTGCAGGATTCGCTTCTCGT
TCAGCGTGTGCTCCACCTGCTTCAGCTTGACCACCTTCTGCTTGTCGAGG
ATCTTCATGGCATAATAGTCTTTC

BO04869.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4379-PA 1062 Pka-C1-RA 204..1059 874..19 4280 100 Minus
CG4379-PB 1062 Pka-C1-RB 204..1059 874..19 4280 100 Minus
CG4379-PC 1062 Pka-C1-RC 204..1059 874..19 4280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-C1-RD 4480 CG4379-RD 1467..2322 874..19 4280 100 Minus
Pka-C1-RC 5312 CG4379-RC 1252..2107 874..19 4280 100 Minus
Pka-C1-RB 5114 CG4379-RB 1054..1909 874..19 4280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9696508..9697363 19..874 4280 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:29:24 has no hits.

BO04869.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:49 Download gff for BO04869.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4379-PB 204..1062 18..874 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:01 Download gff for BO04869.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4379-PC 204..1062 18..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:32 Download gff for BO04869.3prime
Subject Subject Range Query Range Percent Splice Strand
Pka-C1-RB 1054..1909 19..874 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:56 Download gff for BO04869.3prime
Subject Subject Range Query Range Percent Splice Strand
Pka-C1-RB 1054..1909 19..874 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:56 Download gff for BO04869.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9696508..9697363 19..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:32 Download gff for BO04869.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9696508..9697363 19..874 100   Plus

BO04869.5prime Sequence

781 bp (780 high quality bases) assembled on 2005-11-29

> BO04869.5prime
GAAGTTATCAGTCGACATGGGCAACAACGCCACCACGTCGAATAAGAAGG
TCGATGCCGCCGAGACGGTGAAGGAGTTCCTCGAGCAGGCCAAGGAGGAG
TTCGAGGACAAGTGGCGACGCAATCCGACCAACACCGCCGCCCTCGATGA
CTTCGAACGGATCAAGACCCTGGGCACCGGCTCCTTTGGCCGTGTCATGA
TCGTCCAGCACAAGCCCACGAAAGACTATTATGCCATGAAGATCCTCGAC
AAGCAGAAGGTGGTCAAGCTGAAGCAGGTGGAGCACACGCTGAACGAGAA
GCGAATCCTGCAGGCCATTCAGTTCCCCTTCCTCGTCTCGCTGCGCTACC
ACTTCAAGGACAACTCCAACCTTTACATGGTGCTGGAGTATGTTCCCGGT
GGCGAGATGTTCTCCCACCTGCGCAAGGTGGGCCGCTTCTCGGAGCCGCA
CTCGCGCTTCTACGCGGCGCAAATCGTGCTGGCCTTCGAGTACCTGCACT
ACTTGGACCTCATCTACCGTGATCTGAAGCCGGAGAATCTGCTGATTGAC
TCGCAGGGCTACCTCAAGGTGACGGACTTCGGTTTTGCCAAGCGGGTCAA
GGGACGCACCTGGACACTGTGCGGCACGCCCGAATACCTGGCCCCGGAGA
TCATTCTGTCCAAGGGCTATAACAAGGCCGTGGACTGGTGGGCGTTGGGC
GTACTCGTCTACGAAATGGCCGCCGGCTATCCGCCGTTCTTTGCGGATCA
GCCGATTCAGATCTACGAGAAGATCGTCTCC

BO04869.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4379-PA 1062 Pka-C1-RA 1..765 17..781 3825 100 Plus
CG4379-PB 1062 Pka-C1-RB 1..765 17..781 3825 100 Plus
CG4379-PC 1062 Pka-C1-RC 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-C1-RD 4480 CG4379-RD 1264..2028 17..781 3825 100 Plus
Pka-C1-RC 5312 CG4379-RC 1049..1813 17..781 3825 100 Plus
Pka-C1-RB 5114 CG4379-RB 851..1615 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9696802..9697566 781..17 3825 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:14:06 has no hits.

BO04869.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:50 Download gff for BO04869.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4379-PB 1..765 17..781 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:02 Download gff for BO04869.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4379-PC 1..765 17..781 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:27 Download gff for BO04869.5prime
Subject Subject Range Query Range Percent Splice Strand
Pka-C1-RB 851..1615 17..781 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:43:51 Download gff for BO04869.5prime
Subject Subject Range Query Range Percent Splice Strand
Pka-C1-RB 851..1615 17..781 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:43:51 Download gff for BO04869.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9696802..9697566 17..781 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:27 Download gff for BO04869.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9696802..9697566 17..781 100   Minus

BO04869.complete Sequence

1093 bp (1093 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629905

> BO04869.complete
GAAGTTATCAGTCGACATGGGCAACAACGCCACCACGTCGAATAAGAAGG
TCGATGCCGCCGAGACGGTGAAGGAGTTCCTCGAGCAGGCCAAGGAGGAG
TTCGAGGACAAGTGGCGACGCAATCCGACCAACACCGCCGCCCTCGATGA
CTTCGAACGGATCAAGACCCTGGGCACCGGCTCCTTTGGCCGTGTCATGA
TCGTCCAGCACAAGCCCACGAAAGACTATTATGCCATGAAGATCCTCGAC
AAGCAGAAGGTGGTCAAGCTGAAGCAGGTGGAGCACACGCTGAACGAGAA
GCGAATCCTGCAGGCCATTCAGTTCCCCTTCCTCGTCTCGCTGCGCTACC
ACTTCAAGGACAACTCCAACCTTTACATGGTGCTGGAGTATGTTCCCGGT
GGCGAGATGTTCTCCCACCTGCGCAAGGTGGGCCGCTTCTCGGAGCCGCA
CTCGCGCTTCTACGCGGCGCAAATCGTGCTGGCCTTCGAGTACCTGCACT
ACTTGGACCTCATCTACCGTGATCTGAAGCCGGAGAATCTGCTGATTGAC
TCGCAGGGCTACCTCAAGGTGACGGACTTCGGTTTTGCCAAGCGGGTCAA
GGGACGCACCTGGACACTGTGCGGCACGCCCGAATACCTGGCCCCGGAGA
TCATTCTGTCCAAGGGCTATAACAAGGCCGTGGACTGGTGGGCGTTGGGC
GTACTCGTCTACGAAATGGCCGCCGGCTATCCGCCGTTCTTTGCGGATCA
GCCGATTCAGATCTACGAGAAGATCGTCTCCGGCAAGGTGCGCTTCCCAT
CGCACTTTGGCTCCGATCTGAAGGACCTACTGCGCAACCTGCTGCAGGTG
GATCTGACCAAGCGCTACGGCAATCTGAAGGCGGGCGTCAATGATATTAA
GAACCAGAAGTGGTTCGCCTCCACCGACTGGATTGCGATCTTCCAAAAGA
AAATCGAGGCGCCGTTCATTCCGCGGTGTAAGGGTCCCGGCGACACGAGC
AATTTCGATGACTACGAGGAGGAGGCGCTGCGGATCTCCAGCACCGAGAA
GTGTGCCAAGGAGTTTGCTGAATTCGCAAGCTTTCTAGACCAT

BO04869.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-C1-RD 1062 CG4379-PD 1..1059 17..1075 5295 100 Plus
Pka-C1-RC 1062 CG4379-PC 1..1059 17..1075 5295 100 Plus
Pka-C1-RB 1062 CG4379-PB 1..1059 17..1075 5295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-C1-RD 4480 CG4379-RD 1264..2322 17..1075 5295 100 Plus
Pka-C1-RC 5312 CG4379-RC 1049..2107 17..1075 5295 100 Plus
Pka-C1-RB 5114 CG4379-RB 851..1909 17..1075 5295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9696508..9697566 1075..17 5295 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:39:25 has no hits.

BO04869.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:04 Download gff for BO04869.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-C1-RC 1..1062 17..1076 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:50 Download gff for BO04869.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-C1-RC 1045..2103 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:19 Download gff for BO04869.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-C1-RB 851..1909 17..1077 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:05 Download gff for BO04869.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-C1-RC 1045..2103 17..1075 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:56 Download gff for BO04869.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-C1-RB 851..1909 17..1077 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:56 Download gff for BO04869.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9696506..9697566 17..1077 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:19 Download gff for BO04869.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9696506..9697566 17..1077 99   Minus

BO04869.pep Sequence

Translation from 16 to 1093

> BO04869.pep
MGNNATTSNKKVDAAETVKEFLEQAKEEFEDKWRRNPTNTAALDDFERIK
TLGTGSFGRVMIVQHKPTKDYYAMKILDKQKVVKLKQVEHTLNEKRILQA
IQFPFLVSLRYHFKDNSNLYMVLEYVPGGEMFSHLRKVGRFSEPHSRFYA
AQIVLAFEYLHYLDLIYRDLKPENLLIDSQGYLKVTDFGFAKRVKGRTWT
LCGTPEYLAPEIILSKGYNKAVDWWALGVLVYEMAAGYPPFFADQPIQIY
EKIVSGKVRFPSHFGSDLKDLLRNLLQVDLTKRYGNLKAGVNDIKNQKWF
ASTDWIAIFQKKIEAPFIPRCKGPGDTSNFDDYEEEALRISSTEKCAKEF
AEFASFLDH

BO04869.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-C1-PD 353 CG4379-PD 1..353 1..353 1863 100 Plus
Pka-C1-PC 353 CG4379-PC 1..353 1..353 1863 100 Plus
Pka-C1-PB 353 CG4379-PB 1..353 1..353 1863 100 Plus
Pka-C3-PA 500 CG6117-PA 148..481 3..336 946 51.8 Plus
Pka-C3-PB 583 CG6117-PB 231..564 3..336 946 51.8 Plus