Clone Sequence Records
BO04870.3prime Sequence
911 bp (904 high quality bases) assembled on 2005-12-02
> BO04870.3prime
ATGGTCTAGAAAGCTTGCTCCCAGTTTTCGGCGCCGCGGCAGCTGCAGCG
GCAAGGCAACAACGGAAGCAGACGAGGTCGGATTTGCTGCCATCACCGGA
AGGGCAAGAGCCACTGGAGCTGCGAGTCCGCCGCCGACGTACTGCAGATG
CTGCACCACCGAGAGCTGTGGCTGCTGCTGCTTGAGCAGCTTGGCGGCAG
CGTGTGCCTCCGCCGCAGCCACCACGACGGGGTGCACCGGTTCGGTGCCG
ACTCCTCCGTTGACATGTGGACCGGTGCTTTCGCAATCGTCTTCGTCTGA
GATCAGTGATATGCTGAGGTCGCTGGACAGTTTTAGGGAGATGGGCGTGG
GCGGCGAGGGAGCCACCAAGGGCGCCACTTTGGCGCGCAATGCCGGTGAC
AGTTTCTGCAGCTGCTCCGGCATCAGGTCGTTCGTGTATTCCGGCACTCC
ACTAAAAGCCAGGCCTTCGCGTAGTTTGCTCAGCGAGAGTTCGTAAATAC
GGTTTGCGATGACCGTGTGAACGGTCGTCTCGTCCGGCAGCGTGGCTGTG
ATGCCTCCGCCCACGTCCACCTCCAGAAAACAGCCCGTTTCATTGCCGCC
CTCTCCGCCTTCGGCGGTGGCGAATCCATTGCTGGCCGCCGTCGACGCTC
GACACGGCTTGGGGTGACCTGACACCCGCGTCAGGCAGTTGGCAGTGGTG
GAGGTGCGCGGCACCAACGAAACAGTTACCTCTTCGATGGTCTCCGACTG
TGTGAGCGGTGCGAGCGGTGGCGGTGAGCGCATGGAGAGCTGGGAGCGCA
CTCTTGCCGTGCTGCTGGGTTCCTGCTCGTTGTGCTCGTCATCGCTGGTT
ATCAGGATGCTGTCGGTCACTGGGTATGAGTGGGTGGCAGCTCTGCGCGG
CGCCTGCCTTC
BO04870.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3771-PA | 1230 | a6-RA | 335..1227 | 911..19 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a6-RC | 2047 | CG3771-RC | 687..1579 | 911..19 | 4465 | 100 | Minus |
| a6-RB | 2218 | CG3771-RB | 695..1587 | 911..19 | 4465 | 100 | Minus |
| a6-RA | 2210 | CG3771-RA | 687..1579 | 911..19 | 4465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1694246..1695138 | 19..911 | 4465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:14:19 has no hits.
BO04870.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:11:51 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:04 Download gff for
BO04870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3771-PA | 335..1230 | 16..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:28 Download gff for
BO04870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 687..1585 | 12..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:28:22 Download gff for
BO04870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 687..1585 | 12..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:28:22 Download gff for
BO04870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1694240..1695138 | 12..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:28 Download gff for
BO04870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1588273..1589171 | 12..911 | 99 | | Plus |
BO04870.5prime Sequence
920 bp (818 high quality bases) assembled on 2005-12-02
> BO04870.5prime
GAAGTTATCAGTCGACATGAACCAGAAACATTCCGAACCATTCTACATAT
CGCCCCGGCTGTTCGACAACCGTCGTCTCAAGCGGCGCCGCTGTCGGTGG
ATGGAACGCCTGCTTGAGCACCAGCGGATCTGCATGGCCCGGATGCGCGA
CCAAGTGGCTCTCGCCTCCAAGACTGACCGGCAGCTGTCCCATCTGCAGC
GGCGCCATGTCGCCTCCACTTTGCAGCCGGACGTGACCATCGACCTGCTG
TCGGATGACGATGAGACCCCATCGGCCGGACAGCCCGCTGCAGCTGGCCA
CAATCGCCTCCTGATTCCTGCCCCAGGGCACCGAGCACATAGAACGGGCA
GAAGGCAGGCGCCGCGCAGAGCTGCCACCCACTCATACCCAGTGACCGAC
AGCATCCTGATAACCAGCGATGACGAGCACAACGAGCAGGAACCCAGCAG
CACGGCAAGAGTGCGCTCCCAGCTCTCCATGCGCTCACCGCCACCGCTCG
CACCGCTCACACAGTCGGAGACCATCGAAGAGGTAACTGTTTCGTTGGTG
CCGCGCACCTCCACCACTGCCAACTGCCTGACGCGGGTGTCAGGTCACCC
CAAGCCGTGTCGAGCGTCGACGGCGGCCAGCAATGGATTCGCCACCGCCG
AAGGCGGAGAGGGCGGCAATGAAACGGGCTGTTTTCTGGAGGTGGACGTG
GGCGGAGGCATCACAGCCACGCTGCCGGACGAGACGACCGTTCACACGGT
CATCGCAAACCGTATTTACGAACTCTCGCTGAGCAAACTACGCGAAGGCC
TGGCTTTTAGTGGAGTGCCGGAATACACGAACGACCTGATGCCGGAGCAG
CTGCAGAAACTGTCACCGGCATTGCGCGCCAAAGTGGCGCCCTTGGTGGC
TCCCTCGCCGCCCACGCCCA
BO04870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3771-PA | 1230 | a6-RA | 1..904 | 17..920 | 4520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a6-RC | 2047 | CG3771-RC | 348..1256 | 12..920 | 4545 | 100 | Plus |
| a6-RA | 2210 | CG3771-RA | 348..1256 | 12..920 | 4545 | 100 | Plus |
| a6-RB | 2218 | CG3771-RB | 358..1264 | 14..920 | 4535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1694569..1695475 | 920..14 | 4535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:40:27 has no hits.
BO04870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:11:52 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:05 Download gff for
BO04870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3771-PA | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:13 Download gff for
BO04870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 345..1255 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:37 Download gff for
BO04870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 345..1255 | 9..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:37 Download gff for
BO04870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1694570..1695475 | 14..919 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:13 Download gff for
BO04870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1588603..1589508 | 14..919 | 100 | | Minus |
BO04870.complete Sequence
1261 bp (1261 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629906
> BO04870.complete
GAAGTTATCAGTCGACATGAACCAGAAACATTCCGAACCATTCTACATAT
CGCCCCGGCTGTTCGACAACCGTCGTCTCAAGCGGCGCCGCTGTCGGTGG
ATGGAACGCCTGCTTGAGCACCAGCGGATCTGCATGGCCCGGATGCGCGA
CCAAGTGGCTCTCGCCTCCAAGACTGACCGGCAGCTGTCCCATCTGCAGC
GGCGCCATGTCGCCTCCACTTTGCAGCCGGACGTGACCATCGACCTGCTG
TCGGATGACGATGAGACCCCATCGGCCGGACAGCCCGCTGCAGCTGGCCA
CAATCGCCTCCTGATTCCTGCCCCAGGGCACCGAGCACATAGAACGGGCA
GAAGGCAGGCGCCGCGCAGAGCTGCCACCCACTCATACCCAGTGACCGAC
AGCATCCTGATAACCAGCGATGACGAGCACAACGAGCAGGAACCCAGCAG
CACGGCAAGAGTGCGCTCCCAGCTCTCCATGCGCTCACCGCCACCGCTCG
CACCGCTCACACAGTCGGAGACCATCGAAGAGGTAACTGTTTCGTTGGTG
CCGCGCACCTCCACCACTGCCAACTGCCTGACGCGGGTGTCAGGTCACCC
CAAGCCGTGTCGAGCGTCGACGGCGGCCAGCAATGGATTCGCCACCGCCG
AAGGCGGAGAGGGCGGCAATGAAACGGGCTGTTTTCTGGAGGTGGACGTG
GGCGGAGGCATCACAGCCACGCTGCCGGACGAGACGACCGTTCACACGGT
CATCGCAAACCGTATTTACGAACTCTCGCTGAGCAAACTACGCGAAGGCC
TGGCTTTTAGTGGAGTGCCGGAATACACGAACGACCTGATGCCGGAGCAG
CTGCAGAAACTGTCACCGGCATTGCGCGCCAAAGTGGCGCCCTTGGTGGC
TCCCTCGCCGCCCACGCCCATCTCCCTAAAACTGTCCAGCGACCTCAGCA
TATCACTGATCTCAGACGAAGACGATTGCGAAAGCACCGGTCCACATGTC
AACGGAGGAGTCGGCACCGAACCGGTGCACCCCGTCGTGGTGGCTGCGGC
GGAGGCACACGCTGCCGCCAAGCTGCTCAAGCAGCAGCAGCCACAGCTCT
CGGTGGTGCAGCATCTGCAGTACGTCGGCGGCGGACTCGCAGCTCCAGTG
GCTCTTGCCCTTCCGGTGATGGCAGCAAATCCGACCTCGTCTGCTTCCGT
TGTTGCCTTGCCGCTGCAGCTGCCGCGGCGCCGAAAACTGGGAGCAAGCT
TTCTAGACCAT
BO04870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a6-RC | 1230 | CG3771-PC | 1..1227 | 17..1243 | 6135 | 100 | Plus |
| a6-RB | 1230 | CG3771-PB | 1..1227 | 17..1243 | 6135 | 100 | Plus |
| a6-RA | 1230 | CG3771-PA | 1..1227 | 17..1243 | 6135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a6-RC | 2047 | CG3771-RC | 348..1579 | 12..1243 | 6160 | 100 | Plus |
| a6-RA | 2210 | CG3771-RA | 348..1579 | 12..1243 | 6160 | 100 | Plus |
| a6-RB | 2218 | CG3771-RB | 358..1587 | 14..1243 | 6150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1694246..1695475 | 1243..14 | 6150 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:41:51 has no hits.
BO04870.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:38 Download gff for
BO04870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 1..1230 | 17..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:14 Download gff for
BO04870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 345..1585 | 9..1250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:24 Download gff for
BO04870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 353..1579 | 17..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:38 Download gff for
BO04870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 345..1585 | 9..1250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:51 Download gff for
BO04870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 353..1579 | 17..1245 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:51 Download gff for
BO04870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1694243..1695472 | 17..1245 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:24 Download gff for
BO04870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1588276..1589505 | 17..1245 | 99 | | Minus |
BO04870.pep Sequence
Translation from 16 to 1261
> BO04870.pep
MNQKHSEPFYISPRLFDNRRLKRRRCRWMERLLEHQRICMARMRDQVALA
SKTDRQLSHLQRRHVASTLQPDVTIDLLSDDDETPSAGQPAAAGHNRLLI
PAPGHRAHRTGRRQAPRRAATHSYPVTDSILITSDDEHNEQEPSSTARVR
SQLSMRSPPPLAPLTQSETIEEVTVSLVPRTSTTANCLTRVSGHPKPCRA
STAASNGFATAEGGEGGNETGCFLEVDVGGGITATLPDETTVHTVIANRI
YELSLSKLREGLAFSGVPEYTNDLMPEQLQKLSPALRAKVAPLVAPSPPT
PISLKLSSDLSISLISDEDDCESTGPHVNGGVGTEPVHPVVVAAAEAHAA
AKLLKQQQPQLSVVQHLQYVGGGLAAPVALALPVMAANPTSSASVVALPL
QLPRRRKLGASFLDH
BO04870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a6-PC | 409 | CG3771-PC | 1..409 | 1..409 | 2092 | 100 | Plus |
| a6-PB | 409 | CG3771-PB | 1..409 | 1..409 | 2092 | 100 | Plus |
| a6-PA | 409 | CG3771-PA | 1..409 | 1..409 | 2092 | 100 | Plus |
