Clone BO04872 Report

Search the DGRC for BO04872

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG10103-RA
Protein status:BO04872.pep: validated full length
Sequenced Size:1285

Clone Sequence Records

BO04872.3prime Sequence

938 bp (789 high quality bases) assembled on 2005-12-02

> BO04872.3prime
ATGGTCTAGAAAGCTTGCCTTTCGCTTCTTAAGGTTCTCGAAGCGACGTG
ACAGGTCATCGAAATCAATCTCATCCTCGTCGTTCTTCTTCTCGGCACCT
GCGCCCGGAATATCTGGCAGATCGTTGGGAACGTTGGGCAGCGAGGGGAA
GTCCAATGCCGGAGGAGCACTTGGTAGCGTGGGATTACCCGGTGGCAGCT
TGGATCGGGGTTGTGGTTTCGGTTTGTTGGCATTCTGGAGATTTACAGGA
TTAATGGAGGTGTAACGCGGCGGCGGATCATTTTCGGGTTTGGGGCGCAA
AATATTCTCATCCGGGCTGCCCGAGCCATCCGTGTTGTTCGCTTCACGAT
CGATAAAGTTGGTGTTCAGATCCTTCTCCTCGGCACATTTGGCAGGCAGG
ACTGCATGCGTTGGCGGCTGATTGGGCGGTATATTGTAGGCAAACGGCGG
CGGTGCCTGCACGGGATGGGGTAGAGCATATGCACCAGCTGGAGCTCCAC
CTCCTCCGCCGCCACCACCTCCACCGAAGGGTGGGTAATTGAAGGGCTTT
GCGCTCGGTGGCATCGGCATGTCGGGCAGTGCTGGCATAGCCGGATAGCC
AATGAAGCCCATTTGTGGCGGCGCAGCACCACCGCCGCCAGCACCTCCGC
CTCCGCTCAAGTTGTTCCGATCGGAGAGGTCAATCAGATGCGGCTGCTGT
GGCTGATCCTCCTGCATAACCTGCGGATCCGGTTCGTATTCGATGTTGTA
GTTCTTGGCAATGGCAATGAGGTAATTCTCCACCAAAAGCTTGGGTGGTG
CCTGCAGCGTCAGCTTGTGCATGAGTTTCTCGGACACATAGTGCTCGCCA
GTGGCGGTTCTCGATTGCTCGGCGAACTGTGAACCGTATTTGGTCACAAA
TATGTCCGATATGATCTTCAGCTCGGCTATATCGCTCT

BO04872.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10103-PA 1254 CG10103-RA 332..1251 938..19 4575 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10103-RA 1605 CG10103-RA 425..1351 938..12 4590 99.7 Minus
CG10103-RE 1506 CG10103-RE 425..1066 938..297 3195 99.8 Minus
CG10103-RF 1189 CG10103-RF 425..1065 938..298 3190 99.8 Minus
CG10103-RE 1506 CG10103-RE 1065..1252 199..12 910 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6755420..6756009 349..938 2935 99.8 Plus
3L 28110227 3L 6754271..6754496 12..237 1100 99.1 Plus
3L 28110227 3L 6754745..6754808 235..298 320 100 Plus
3L 28110227 3L 6755073..6755123 298..348 255 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:40:46 has no hits.

BO04872.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:54 Download gff for BO04872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10103-PA 332..1254 15..938 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:08 Download gff for BO04872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10103-PA 332..1254 15..938 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:53 Download gff for BO04872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 425..1357 6..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:44 Download gff for BO04872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 425..1357 6..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:44 Download gff for BO04872.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6754265..6754493 6..234 97 <- Plus
3L 6754745..6754807 235..297 100 <- Plus
3L 6755073..6755123 298..348 100 <- Plus
3L 6755420..6756009 349..938 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:53 Download gff for BO04872.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6747365..6747593 6..234 97 <- Plus
arm_3L 6747845..6747907 235..297 100 <- Plus
arm_3L 6748173..6748223 298..348 100 <- Plus
arm_3L 6748520..6749109 349..938 99   Plus

BO04872.5prime Sequence

897 bp (841 high quality bases) assembled on 2005-12-02

> BO04872.5prime
GAAGTTATCAGTCGACATGTTTTCCAGCGGCCCCAATTACAACAAACTGA
AGACCAATCTTCGATTGGCTCTCAATCGCCTGAAATTGCTGGAGAAGAAG
AAGGCGGAGCTGACGCAAAAGTCCAGGAAGGAAATAGCCGACTATTTGGC
CACGGGCAAAACGGAAAGGGCGAGGATTCGCGTGGAGCACATCATTAGGG
AGGACTACTTGGTGGAGGCAATGGAAATGGTGGAGATGTACTGCGACCTG
TTGCTCGCCAGATTCGGCCTCATCACCCAGATGAAGGAGCTGGACACAGG
GATCGCTGAGCCGGTGGCCAGCTTGGTTTGGGTGTGTCCCCGCCTACAGA
GCGATATAGCCGAGCTGAAGATCATATCGGACATATTTGTGACCAAATAC
GGTCCACAGTTCGCCGAGCAATCGAGAACCGCCACTGGCGAGCACTATGT
GTCCGAGAAACTCATGCACAAGCTGACGCTGCAGGCACCACCCAAGCTTT
TGGTGGAGAATTACCTCATTGCCATTGCCAAGAACTACAACATCGAATAC
GAACCGGATCCGCAGGTTATGCAGGAGGATCAGCCACAGCAGCCGCATCT
GATTGACCTCTCCGATCGGAACAACTTGAGCGGAGGCGGAGGTGCTGGCG
GCGGTGGTGCTGCGCCGCCACAAATGGGCTTCATTGGCTATCCGGCTATG
CCAGCACTGCCCGACATGCCGATGCCACCGAGCGCAAAGCCCTTCAATTA
CCCACCCTTCGGTGGAGGTGGTGGCGGCGGAGGAGGTGGAGCTCCAGCTG
GTGCATATGCTCTACCCCATCCCGTGCAGGCACCGCCGCCGTTTGCCTAC
AATATACCGCCCCATCAGCCGCCAACGCATGCAGTCCTGCCTGCCAA

BO04872.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10103-PA 1254 CG10103-RA 1..881 17..897 4380 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10103-RF 1189 CG10103-RF 94..974 17..897 4390 99.9 Plus
CG10103-RE 1506 CG10103-RE 94..974 17..897 4390 99.9 Plus
CG10103-RD 1491 CG10103-RD 94..974 17..897 4390 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6755460..6756161 897..196 3495 99.9 Minus
3L 28110227 3L 6756222..6756404 199..17 915 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:40:35 has no hits.

BO04872.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:55 Download gff for BO04872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10103-PA 1..879 17..895 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:09 Download gff for BO04872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10103-PA 1..879 17..895 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:14 Download gff for BO04872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10103-RD 87..972 10..895 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:51 Download gff for BO04872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10103-RD 87..972 10..895 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:51 Download gff for BO04872.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6755462..6756158 199..895 99 <- Minus
3L 6756223..6756411 10..198 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:14 Download gff for BO04872.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6748562..6749258 199..895 99 <- Minus
arm_3L 6749323..6749511 10..198 98   Minus

BO04872.complete Sequence

1285 bp (1285 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629907

> BO04872.complete
GAAGTTATCAGTCGACATGTTTTCCAGCGGCCCCAATTACAACAAACTGA
AGACCAATCTTCGATTGGCTCTCAATCGCCTGAAATTGCTGGAGAAGAAG
AAGGCGGAGCTGACGCAAAAGTCCAGGAAGGAAATAGCCGACTATTTGGC
CACGGGCAAAACGGAAAGGGCGAGGATTCGCGTGGAGCACATCATTAGGG
AGGACTACTTGGTGGAGGCAATGGAAATGGTGGAGATGTACTGCGACCTG
TTGCTCGCCAGATTCGGCCTCATCACCCAGATGAAGGAGCTGGACACAGG
GATCGCTGAGCCGGTGGCCAGCTTGGTTTGGGTGTGTCCCCGCCTACAGA
GCGATATAGCCGAGCTGAAGATCATATCGGACATATTTGTGACCAAATAC
GGTCCACAGTTCGCCGAGCAATCGAGAACCGCCACTGGCGAGCACTATGT
GTCCGAGAAACTCATGCACAAGCTGACGCTGCAGGCACCACCCAAGCTTT
TGGTGGAGAATTACCTCATTGCCATTGCCAAGAACTACAACATCGAATAC
GAACCGGATCCGCAGGTTATGCAGGAGGATCAGCCACAGCAGCCGCATCT
GATTGACCTCTCCGATCGGAACAACTTGAGCGGAGGCGGAGGTGCTGGCG
GCGGTGGTGCTGCGCCGCCACAAATGGGCTTCATTGGCTATCCGGCTATG
CCAGCACTGCCCGACATGCCGATGCCACCGAGCGCAAAGCCCTTCAATTA
CCCACCCTTCGGTGGAGGTGGTGGCGGCGGAGGAGGTGGAGCTCCAGCTG
GTGCATATGCTCTACCCCATCCCGTGCAGGCACCGCCGCCGTTTGCCTAC
AATATACCGCCCAATCAGCCGCCAACGCATGCAGTCCTGCCTGCCAAATG
TGCCGAGGAGAAGGATCTGAACACCAACTTTATCGATCGTGAAGCGAACA
ACACGGATGGCTCGGGCAGCCCGGATGAGAATATTTTGCGCCCCAAACCC
GAAAATGATCCGCCGCCGCGTTACACCTCCATTAATCCTGTAAATCTCCA
GAATGCCAACAAACCGAAACCACAACCCCGATCCAAGCTGCCACCGGGTA
ATCCCACGCTACCAAGTGCTCCTCCGGCATTGGACTTCCCCTCGCTGCCC
AACGTTCCCAACGATCTGCCAGATATTCCGGGCGCAGGTGCCGAGAAGAA
GAACGACGAGGATGAGATTGATTTCGATGACCTGTCACGTCGCTTCGAGA
ACCTTAAGAAGCGAAAGGCAAGCTTTCTAGACCAT

BO04872.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10103-RA 1254 CG10103-PA 1..1251 17..1267 6255 100 Plus
CG10103-RE 1155 CG10103-PE 1..973 17..989 4865 100 Plus
CG10103-RF 984 CG10103-PF 1..972 17..988 4860 100 Plus
CG10103-RE 1155 CG10103-PE 972..1152 1087..1267 905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10103-RA 1605 CG10103-RA 94..1351 17..1274 6260 99.8 Plus
CG10103-RE 1506 CG10103-RE 94..1066 17..989 4865 100 Plus
CG10103-RF 1189 CG10103-RF 94..1065 17..988 4860 100 Plus
CG10103-RE 1506 CG10103-RE 1065..1252 1087..1274 910 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6755420..6756161 937..196 3710 100 Minus
3L 28110227 3L 6754271..6754496 1274..1049 1100 99.1 Minus
3L 28110227 3L 6756222..6756404 199..17 915 100 Minus
3L 28110227 3L 6754745..6754808 1051..988 320 100 Minus
3L 28110227 3L 6755073..6755123 988..938 255 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:09:12 has no hits.

BO04872.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:40 Download gff for BO04872.complete
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 1..1254 17..1271 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:16 Download gff for BO04872.complete
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 109..1379 10..1280 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:21 Download gff for BO04872.complete
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 101..1344 24..1269 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:42 Download gff for BO04872.complete
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 109..1379 10..1280 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:59 Download gff for BO04872.complete
Subject Subject Range Query Range Percent Splice Strand
CG10103-RA 101..1344 24..1269 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:59 Download gff for BO04872.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6754276..6754493 1052..1269 99 <- Minus
3L 6754745..6754807 989..1051 100 <- Minus
3L 6755073..6755123 938..988 100 <- Minus
3L 6755420..6756158 199..937 100 <- Minus
3L 6756223..6756397 24..198 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:21 Download gff for BO04872.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6747376..6747593 1052..1269 99 <- Minus
arm_3L 6747845..6747907 989..1051 100 <- Minus
arm_3L 6748173..6748223 938..988 100 <- Minus
arm_3L 6748520..6749258 199..937 100 <- Minus
arm_3L 6749323..6749497 24..198 100   Minus

BO04872.pep Sequence

Translation from 16 to 1285

> BO04872.pep
MFSSGPNYNKLKTNLRLALNRLKLLEKKKAELTQKSRKEIADYLATGKTE
RARIRVEHIIREDYLVEAMEMVEMYCDLLLARFGLITQMKELDTGIAEPV
ASLVWVCPRLQSDIAELKIISDIFVTKYGPQFAEQSRTATGEHYVSEKLM
HKLTLQAPPKLLVENYLIAIAKNYNIEYEPDPQVMQEDQPQQPHLIDLSD
RNNLSGGGGAGGGGAAPPQMGFIGYPAMPALPDMPMPPSAKPFNYPPFGG
GGGGGGGGAPAGAYALPHPVQAPPPFAYNIPPNQPPTHAVLPAKCAEEKD
LNTNFIDREANNTDGSGSPDENILRPKPENDPPPRYTSINPVNLQNANKP
KPQPRSKLPPGNPTLPSAPPALDFPSLPNVPNDLPDIPGAGAEKKNDEDE
IDFDDLSRRFENLKKRKASFLDH

BO04872.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10103-PA 417 CG10103-PA 1..417 1..417 2221 100 Plus
CG10103-PB 400 CG10103-PB 1..400 1..417 2104 95.9 Plus
CG10103-PC 396 CG10103-PC 1..396 1..417 2070 95 Plus
CG10103-PE 384 CG10103-PE 1..384 1..417 1992 92.1 Plus
CG10103-PD 379 CG10103-PD 1..379 1..417 1964 90.9 Plus