Clone Sequence Records
BO04872.3prime Sequence
938 bp (789 high quality bases) assembled on 2005-12-02
> BO04872.3prime
ATGGTCTAGAAAGCTTGCCTTTCGCTTCTTAAGGTTCTCGAAGCGACGTG
ACAGGTCATCGAAATCAATCTCATCCTCGTCGTTCTTCTTCTCGGCACCT
GCGCCCGGAATATCTGGCAGATCGTTGGGAACGTTGGGCAGCGAGGGGAA
GTCCAATGCCGGAGGAGCACTTGGTAGCGTGGGATTACCCGGTGGCAGCT
TGGATCGGGGTTGTGGTTTCGGTTTGTTGGCATTCTGGAGATTTACAGGA
TTAATGGAGGTGTAACGCGGCGGCGGATCATTTTCGGGTTTGGGGCGCAA
AATATTCTCATCCGGGCTGCCCGAGCCATCCGTGTTGTTCGCTTCACGAT
CGATAAAGTTGGTGTTCAGATCCTTCTCCTCGGCACATTTGGCAGGCAGG
ACTGCATGCGTTGGCGGCTGATTGGGCGGTATATTGTAGGCAAACGGCGG
CGGTGCCTGCACGGGATGGGGTAGAGCATATGCACCAGCTGGAGCTCCAC
CTCCTCCGCCGCCACCACCTCCACCGAAGGGTGGGTAATTGAAGGGCTTT
GCGCTCGGTGGCATCGGCATGTCGGGCAGTGCTGGCATAGCCGGATAGCC
AATGAAGCCCATTTGTGGCGGCGCAGCACCACCGCCGCCAGCACCTCCGC
CTCCGCTCAAGTTGTTCCGATCGGAGAGGTCAATCAGATGCGGCTGCTGT
GGCTGATCCTCCTGCATAACCTGCGGATCCGGTTCGTATTCGATGTTGTA
GTTCTTGGCAATGGCAATGAGGTAATTCTCCACCAAAAGCTTGGGTGGTG
CCTGCAGCGTCAGCTTGTGCATGAGTTTCTCGGACACATAGTGCTCGCCA
GTGGCGGTTCTCGATTGCTCGGCGAACTGTGAACCGTATTTGGTCACAAA
TATGTCCGATATGATCTTCAGCTCGGCTATATCGCTCT
BO04872.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10103-PA | 1254 | CG10103-RA | 332..1251 | 938..19 | 4575 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10103-RA | 1605 | CG10103-RA | 425..1351 | 938..12 | 4590 | 99.7 | Minus |
CG10103-RE | 1506 | CG10103-RE | 425..1066 | 938..297 | 3195 | 99.8 | Minus |
CG10103-RF | 1189 | CG10103-RF | 425..1065 | 938..298 | 3190 | 99.8 | Minus |
CG10103-RE | 1506 | CG10103-RE | 1065..1252 | 199..12 | 910 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6755420..6756009 | 349..938 | 2935 | 99.8 | Plus |
3L | 28110227 | 3L | 6754271..6754496 | 12..237 | 1100 | 99.1 | Plus |
3L | 28110227 | 3L | 6754745..6754808 | 235..298 | 320 | 100 | Plus |
3L | 28110227 | 3L | 6755073..6755123 | 298..348 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:40:46 has no hits.
BO04872.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:54 Download gff for
BO04872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10103-PA | 332..1254 | 15..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:08 Download gff for
BO04872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10103-PA | 332..1254 | 15..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:53 Download gff for
BO04872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10103-RA | 425..1357 | 6..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:44 Download gff for
BO04872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10103-RA | 425..1357 | 6..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:44 Download gff for
BO04872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6754265..6754493 | 6..234 | 97 | <- | Plus |
3L | 6754745..6754807 | 235..297 | 100 | <- | Plus |
3L | 6755073..6755123 | 298..348 | 100 | <- | Plus |
3L | 6755420..6756009 | 349..938 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:53 Download gff for
BO04872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6747365..6747593 | 6..234 | 97 | <- | Plus |
arm_3L | 6747845..6747907 | 235..297 | 100 | <- | Plus |
arm_3L | 6748173..6748223 | 298..348 | 100 | <- | Plus |
arm_3L | 6748520..6749109 | 349..938 | 99 | | Plus |
BO04872.5prime Sequence
897 bp (841 high quality bases) assembled on 2005-12-02
> BO04872.5prime
GAAGTTATCAGTCGACATGTTTTCCAGCGGCCCCAATTACAACAAACTGA
AGACCAATCTTCGATTGGCTCTCAATCGCCTGAAATTGCTGGAGAAGAAG
AAGGCGGAGCTGACGCAAAAGTCCAGGAAGGAAATAGCCGACTATTTGGC
CACGGGCAAAACGGAAAGGGCGAGGATTCGCGTGGAGCACATCATTAGGG
AGGACTACTTGGTGGAGGCAATGGAAATGGTGGAGATGTACTGCGACCTG
TTGCTCGCCAGATTCGGCCTCATCACCCAGATGAAGGAGCTGGACACAGG
GATCGCTGAGCCGGTGGCCAGCTTGGTTTGGGTGTGTCCCCGCCTACAGA
GCGATATAGCCGAGCTGAAGATCATATCGGACATATTTGTGACCAAATAC
GGTCCACAGTTCGCCGAGCAATCGAGAACCGCCACTGGCGAGCACTATGT
GTCCGAGAAACTCATGCACAAGCTGACGCTGCAGGCACCACCCAAGCTTT
TGGTGGAGAATTACCTCATTGCCATTGCCAAGAACTACAACATCGAATAC
GAACCGGATCCGCAGGTTATGCAGGAGGATCAGCCACAGCAGCCGCATCT
GATTGACCTCTCCGATCGGAACAACTTGAGCGGAGGCGGAGGTGCTGGCG
GCGGTGGTGCTGCGCCGCCACAAATGGGCTTCATTGGCTATCCGGCTATG
CCAGCACTGCCCGACATGCCGATGCCACCGAGCGCAAAGCCCTTCAATTA
CCCACCCTTCGGTGGAGGTGGTGGCGGCGGAGGAGGTGGAGCTCCAGCTG
GTGCATATGCTCTACCCCATCCCGTGCAGGCACCGCCGCCGTTTGCCTAC
AATATACCGCCCCATCAGCCGCCAACGCATGCAGTCCTGCCTGCCAA
BO04872.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10103-PA | 1254 | CG10103-RA | 1..881 | 17..897 | 4380 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10103-RF | 1189 | CG10103-RF | 94..974 | 17..897 | 4390 | 99.9 | Plus |
CG10103-RE | 1506 | CG10103-RE | 94..974 | 17..897 | 4390 | 99.9 | Plus |
CG10103-RD | 1491 | CG10103-RD | 94..974 | 17..897 | 4390 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6755460..6756161 | 897..196 | 3495 | 99.9 | Minus |
3L | 28110227 | 3L | 6756222..6756404 | 199..17 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:40:35 has no hits.
BO04872.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:55 Download gff for
BO04872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10103-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:09 Download gff for
BO04872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10103-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:55:14 Download gff for
BO04872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10103-RD | 87..972 | 10..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:51 Download gff for
BO04872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10103-RD | 87..972 | 10..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:51 Download gff for
BO04872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6755462..6756158 | 199..895 | 99 | <- | Minus |
3L | 6756223..6756411 | 10..198 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:55:14 Download gff for
BO04872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6748562..6749258 | 199..895 | 99 | <- | Minus |
arm_3L | 6749323..6749511 | 10..198 | 98 | | Minus |
BO04872.complete Sequence
1285 bp (1285 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629907
> BO04872.complete
GAAGTTATCAGTCGACATGTTTTCCAGCGGCCCCAATTACAACAAACTGA
AGACCAATCTTCGATTGGCTCTCAATCGCCTGAAATTGCTGGAGAAGAAG
AAGGCGGAGCTGACGCAAAAGTCCAGGAAGGAAATAGCCGACTATTTGGC
CACGGGCAAAACGGAAAGGGCGAGGATTCGCGTGGAGCACATCATTAGGG
AGGACTACTTGGTGGAGGCAATGGAAATGGTGGAGATGTACTGCGACCTG
TTGCTCGCCAGATTCGGCCTCATCACCCAGATGAAGGAGCTGGACACAGG
GATCGCTGAGCCGGTGGCCAGCTTGGTTTGGGTGTGTCCCCGCCTACAGA
GCGATATAGCCGAGCTGAAGATCATATCGGACATATTTGTGACCAAATAC
GGTCCACAGTTCGCCGAGCAATCGAGAACCGCCACTGGCGAGCACTATGT
GTCCGAGAAACTCATGCACAAGCTGACGCTGCAGGCACCACCCAAGCTTT
TGGTGGAGAATTACCTCATTGCCATTGCCAAGAACTACAACATCGAATAC
GAACCGGATCCGCAGGTTATGCAGGAGGATCAGCCACAGCAGCCGCATCT
GATTGACCTCTCCGATCGGAACAACTTGAGCGGAGGCGGAGGTGCTGGCG
GCGGTGGTGCTGCGCCGCCACAAATGGGCTTCATTGGCTATCCGGCTATG
CCAGCACTGCCCGACATGCCGATGCCACCGAGCGCAAAGCCCTTCAATTA
CCCACCCTTCGGTGGAGGTGGTGGCGGCGGAGGAGGTGGAGCTCCAGCTG
GTGCATATGCTCTACCCCATCCCGTGCAGGCACCGCCGCCGTTTGCCTAC
AATATACCGCCCAATCAGCCGCCAACGCATGCAGTCCTGCCTGCCAAATG
TGCCGAGGAGAAGGATCTGAACACCAACTTTATCGATCGTGAAGCGAACA
ACACGGATGGCTCGGGCAGCCCGGATGAGAATATTTTGCGCCCCAAACCC
GAAAATGATCCGCCGCCGCGTTACACCTCCATTAATCCTGTAAATCTCCA
GAATGCCAACAAACCGAAACCACAACCCCGATCCAAGCTGCCACCGGGTA
ATCCCACGCTACCAAGTGCTCCTCCGGCATTGGACTTCCCCTCGCTGCCC
AACGTTCCCAACGATCTGCCAGATATTCCGGGCGCAGGTGCCGAGAAGAA
GAACGACGAGGATGAGATTGATTTCGATGACCTGTCACGTCGCTTCGAGA
ACCTTAAGAAGCGAAAGGCAAGCTTTCTAGACCAT
BO04872.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10103-RA | 1254 | CG10103-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
CG10103-RE | 1155 | CG10103-PE | 1..973 | 17..989 | 4865 | 100 | Plus |
CG10103-RF | 984 | CG10103-PF | 1..972 | 17..988 | 4860 | 100 | Plus |
CG10103-RE | 1155 | CG10103-PE | 972..1152 | 1087..1267 | 905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10103-RA | 1605 | CG10103-RA | 94..1351 | 17..1274 | 6260 | 99.8 | Plus |
CG10103-RE | 1506 | CG10103-RE | 94..1066 | 17..989 | 4865 | 100 | Plus |
CG10103-RF | 1189 | CG10103-RF | 94..1065 | 17..988 | 4860 | 100 | Plus |
CG10103-RE | 1506 | CG10103-RE | 1065..1252 | 1087..1274 | 910 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6755420..6756161 | 937..196 | 3710 | 100 | Minus |
3L | 28110227 | 3L | 6754271..6754496 | 1274..1049 | 1100 | 99.1 | Minus |
3L | 28110227 | 3L | 6756222..6756404 | 199..17 | 915 | 100 | Minus |
3L | 28110227 | 3L | 6754745..6754808 | 1051..988 | 320 | 100 | Minus |
3L | 28110227 | 3L | 6755073..6755123 | 988..938 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:09:12 has no hits.
BO04872.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:40 Download gff for
BO04872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10103-RA | 1..1254 | 17..1271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:16 Download gff for
BO04872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10103-RA | 109..1379 | 10..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:21 Download gff for
BO04872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10103-RA | 101..1344 | 24..1269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:42 Download gff for
BO04872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10103-RA | 109..1379 | 10..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:59 Download gff for
BO04872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10103-RA | 101..1344 | 24..1269 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:59 Download gff for
BO04872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6754276..6754493 | 1052..1269 | 99 | <- | Minus |
3L | 6754745..6754807 | 989..1051 | 100 | <- | Minus |
3L | 6755073..6755123 | 938..988 | 100 | <- | Minus |
3L | 6755420..6756158 | 199..937 | 100 | <- | Minus |
3L | 6756223..6756397 | 24..198 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:21 Download gff for
BO04872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6747376..6747593 | 1052..1269 | 99 | <- | Minus |
arm_3L | 6747845..6747907 | 989..1051 | 100 | <- | Minus |
arm_3L | 6748173..6748223 | 938..988 | 100 | <- | Minus |
arm_3L | 6748520..6749258 | 199..937 | 100 | <- | Minus |
arm_3L | 6749323..6749497 | 24..198 | 100 | | Minus |
BO04872.pep Sequence
Translation from 16 to 1285
> BO04872.pep
MFSSGPNYNKLKTNLRLALNRLKLLEKKKAELTQKSRKEIADYLATGKTE
RARIRVEHIIREDYLVEAMEMVEMYCDLLLARFGLITQMKELDTGIAEPV
ASLVWVCPRLQSDIAELKIISDIFVTKYGPQFAEQSRTATGEHYVSEKLM
HKLTLQAPPKLLVENYLIAIAKNYNIEYEPDPQVMQEDQPQQPHLIDLSD
RNNLSGGGGAGGGGAAPPQMGFIGYPAMPALPDMPMPPSAKPFNYPPFGG
GGGGGGGGAPAGAYALPHPVQAPPPFAYNIPPNQPPTHAVLPAKCAEEKD
LNTNFIDREANNTDGSGSPDENILRPKPENDPPPRYTSINPVNLQNANKP
KPQPRSKLPPGNPTLPSAPPALDFPSLPNVPNDLPDIPGAGAEKKNDEDE
IDFDDLSRRFENLKKRKASFLDH
BO04872.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10103-PA | 417 | CG10103-PA | 1..417 | 1..417 | 2221 | 100 | Plus |
CG10103-PB | 400 | CG10103-PB | 1..400 | 1..417 | 2104 | 95.9 | Plus |
CG10103-PC | 396 | CG10103-PC | 1..396 | 1..417 | 2070 | 95 | Plus |
CG10103-PE | 384 | CG10103-PE | 1..384 | 1..417 | 1992 | 92.1 | Plus |
CG10103-PD | 379 | CG10103-PD | 1..379 | 1..417 | 1964 | 90.9 | Plus |