Clone Sequence Records
BO04873.3prime Sequence
870 bp (799 high quality bases) assembled on 2005-12-02
> BO04873.3prime
ATGGTCTAGAAAGCTTGCAAAGATAATATCCTTGAGCACGCTATCGCTGA
TGTTCTGCAGGTCATCCTCACCACCAATCTGATCAAAATCGAATTTATGC
GAGACATTGAATGCATTCTTATCGTTTTCAATGTTGAAATCGGGATCAAG
CTGCAGTGAGTCATTGATTGTTCTGTCGTTGAGCTGAAGACGTGGCGCGA
CATCTTGCTGGTGGCTCTCGGTATGTGGAACCAGTGCATCTAGGCGTCCA
GATGGCGAGGTGCTAAGATTAAGCACATTCCGTGATACCTCCAGGACCTT
TATAACCGCAGCGCTCTTGGCGATCAGTGAAGTGTTGTTTTCCGAAGTGC
GCGGAATGCGCTCAATTCGGGTGCACTCGCTACCACTCAAGGGTGTAAAG
GGATCGCTGGGATCCGTTGGTGAGGTCTGAGGTGAGATCACTGCTGCTCC
TGGCACCGGCGCCTCATCGAAACCGAATGACGCTTGCATTTGCTTCCACT
TGCTGCCCAGGGAGGAGAGATTCGCCTGCGGAGCTGCCTTGACCTTGGAG
GTGTTTTTGTGAATGGTGCGCAGCATTTGCATGGGATCGTTGATCTTGGA
TCGGTTTAAAGTGCCATTAAGGTCAATGCCGGTCGATTGATCAAGGGCTT
TCAGCTTGCGTGCTGATCGAGGCGGCGCAGGTGCGAGTAAGCTGTTGCTT
AAGGCATCAAACTGTTTGCCATTGAAGTCATCTTGCAGTGCAAGACGCAC
TGGGGCATTGCGACCGCCACCGCCGCCCATGTCGATTCTGATGGGAGGCG
TGGAAACAAATTTGGAGCTGATAACCGATTCGAAGCGAGGCGTGGCCGGC
TGAAGCGTCTGTACCCTGGC
BO04873.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11881-PA | 1965 | CG11881-RA | 1111..1962 | 870..19 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt6-RA | 2196 | CG11881-RA | 1192..2043 | 870..19 | 4260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29128946..29129468 | 162..684 | 2615 | 100 | Plus |
| 3R | 32079331 | 3R | 29129529..29129715 | 684..870 | 935 | 100 | Plus |
| 3R | 32079331 | 3R | 29128737..29128880 | 19..162 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:24:34 has no hits.
BO04873.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:56 Download gff for
BO04873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11881-PA | 1111..1965 | 18..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:11 Download gff for
BO04873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11881-PA | 1111..1965 | 18..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:00 Download gff for
BO04873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt6-RA | 1192..2043 | 19..870 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:38:43 Download gff for
BO04873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt6-RA | 1192..2043 | 19..870 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:38:43 Download gff for
BO04873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29129529..29129715 | 684..870 | 100 | | Plus |
| 3R | 29128737..29128880 | 19..162 | 100 | <- | Plus |
| 3R | 29128947..29129467 | 163..683 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:00 Download gff for
BO04873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24954459..24954602 | 19..162 | 100 | <- | Plus |
| arm_3R | 24954669..24955189 | 163..683 | 100 | <- | Plus |
| arm_3R | 24955251..24955437 | 684..870 | 100 | | Plus |
BO04873.5prime Sequence
805 bp (793 high quality bases) assembled on 2005-12-02
> BO04873.5prime
GAAGTTATCAGTCGACATGGATCGGACCATAATTGCACCGTGGAAGGCCG
AAGAGAAGGAGCAGAGCGAGAAGCTCCACAGGAAGCTGCAGGGACTGGCC
CTGGTGCACCCCCTGCCGGACGAGCTGCGTAAGCTGATTGCCTGGGACAT
GTTCCTCAAGCCCAACCAGGTGGCCTTCGTGCATGTGATGCACTACCTCT
TCCGTCTGCTGGATCCCGCGGAGTTCAAACGCCGCTTCTTCTGGCCCATC
ACCGACAAGAAGTCGGAGGCGAACTTTCGCTCCAGCACGGTGGAGTATCT
GAAGCATCTGAACGAGAAGCACCAGCTGCATTGGGCCAACATCAAGTCGT
ATCTGGTGGTGATGCCCGGAGGCATGAGGTTCATCAACTTCCTGCTCGAG
TTCGTGGGCTTCGTGATCCAGGAGCTCATCAAGCAGCGCGAGAAGTCACT
TGGCTTAGAGGCGGGAACACCAAACGTGAGCGCCAAGGTCATGGCCCGCC
AAAATGCCGTGATGAAGGAGTACGCTTCTTCGTATGTGGTCAATCTGGAG
GAGAATACGGCCCTGTTGCGGGACAAGACCCAGAAGATCAGACGCCTGAT
GGCCGATCTGTCTGCAGACATGGGAGTGCCCGAGGAGCAACTGGCGGACG
ATGGCTTTCTGGATGAGTTCGAGGCCACCGCTGCACTCGGCGTGGAGCGG
GTCATTACCCAACCCACCGAAAGGAAATTCGACCTGGAGGCATCTCTGTG
CGGTCTCAAGGAGGCCATCGATCTTTTCCAGGTGAAAGCAGCCGAGAAAC
ACCAG
BO04873.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11881-PA | 1965 | CG11881-RA | 1..770 | 17..786 | 3850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt6-RA | 2196 | CG11881-RA | 82..870 | 17..805 | 3870 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29130103..29130891 | 805..17 | 3870 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:16:28 has no hits.
BO04873.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:56 Download gff for
BO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11881-PA | 1..789 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:12 Download gff for
BO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11881-PA | 1..789 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:08:04 Download gff for
BO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt6-RA | 82..870 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:57 Download gff for
BO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt6-RA | 82..870 | 17..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:57 Download gff for
BO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29130103..29130891 | 17..805 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:08:04 Download gff for
BO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24955825..24956613 | 17..805 | 99 | | Minus |
BO04873.complete Sequence
1996 bp assembled on 2008-08-14
GenBank Submission: FJ629908
> BO04873.complete
GAAGTTATCAGTCGACATGGATCGGACCATAATTGCACCGTGGAAGGCCG
AAGAGAAGGAGCAGAGCGAGAAGCTCCACAGGAAGCTGCAGGGACTGGCC
CTGGTGCACCCCCTGCCGGACGAGCTGCGTAAGCTGATTGCCTGGGACAT
GTTCCTCAAGCCCAACCAGGTGGCCTTCGTGCATGTGATGCACTACCTCT
TCCGTCTGCTGGATCCCGCGGAGTTCAAACGCCGCTTCTTCTGGCCCATC
ACCGACAAGAAGTCGGAGGCGAACTTTCGCTCCAGCACGGTGGAGTATCT
GAAGCATCTGAACGAGAAGCACCAGCTGCATTGGGCCAACATCAAGTCGT
ATCTGGTGGTGATGCCCGGAGGCATGAGGTTCATCAACTTCCTGCTCGAG
TTCGTGGGCTTCGTGATCCAGGAGCTCATCAAGCAGCGCGAGAAGTCACT
TGGCTTAGAGGCGGGAACACCAAACGTGAGCGCCAAGGTCATGGCCCGCC
AAAATGCCGTGATGAAGGAGTACGCTTCTTCGTATGTGGTCAATCTGGAG
GAGAATACGGCCCTGTTGCGGGACAAGACCCAGAAGATCAGACGCCTGAT
GGCCGATCTGTCTGCAGACATGGGAGTGCCCGAGGAGCAACTGGCGGACG
ATGGCTTTCTGGATGAGTTCGAGGCCACCGCTGCACTCGGCGTGGAGCGG
GTCATTACCCAACCCACCGAAAGGAAATTCGACCTGGAGGCATCTCTGTG
CGGTCTCAAGGAGGCCATCGATCTTTTCCAGGTGAAGCAAGCCGAGAACA
ACCAGAGCAAGGAGGCGGTGGAGAAGGCACTTCGGGGCATGCGAGTGCTG
TTCGACTGTGATGCAGTCACAGAAGGAGATTTCTACGATCCTTTGGGCGC
ATCAAAAATGGATGCGCTCTTAAACGGCTTTAATCGGATCAGCGGCACAA
TTGCCGAGCAACTGGATGCTAATGACCACTACAACGAATCGAATGCGTTT
GTCACCACCGATTTGCAGGCTCTTCGAGTGGAACTTTCACAGTCCGAAGT
CCAATTGAACAATTTACTCAAGAAACTAAACGAACCGTCCAAAAAGGACA
AGGGAAGTGCCAATGCAAGTGGCTCCGCCAGGGTACAGACGCTTCAGCCG
GCCACGCCTCGCTTCGAATCGGTTATCAGCTCCAAATTTGTTTCCACGCC
TCCCATCAGAATCGACATGGGCGGCGGTGGCGGTCGCAATGCCCCAGTGC
GTCTTGCACTGCAAGATGACTTCAATGGCAAACAGTTTGATGCCTTAAGC
AACAGCTTACTCGCACCTGCGCCGCCTCGATCAGCACGCAAGCTGAAAGC
CCTTGATCAATCGACCGGCATTGACCTTAATGGCACTTTAAACCGATCCA
AGATCAACGATCCCATGCAAATGCTGCGCACCATTCACAAAAACACCTCC
AAGGTCAAGGCAGCTCCGCAGGCGAATCTCTCCTCCCTGGGCAGCAAGTG
GAAGCAAATGCAAGCGTCATTCGGTTTCGATGAGGCGCCGGTGCCAGGAG
CAGCAGTGATCTCACCTCAGACCTCACCAACGGATCCCAGCGATCCCTTT
ACACCCTTGAGTGGTAGCGAGTGCACCCGAATTGAGCGCATTCCGCGCAC
TTCGGAAAACAACACTTCACTGATCGCCAAGAGCGCTGCGGTTATAAAGG
TCCTGGAGGTATCACGGAATGTGCTTAATCTTAGCACCTCGCCATCTGGA
CGCCTAGATGCACTGGTTCCACATACCGAGAGCCACCAGCAAGATGTCGC
GCCACGTCTTCAGCTCAACGACAGAACAATCAATGACTCACTGCAGCTTG
ATCCCGATTTCAACATTGAAAACGATAAGAATGCATTCAATGTCTCGCAT
AAATTCGATTTTGATCAGATTGGTGGTGAGGATGACCTGCAGAACATCAG
CGATAGCGTGCTCAAGGATATTATCTTTGCAAGCTTTCTAGACCAT
BO04873.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt6-RA | 1965 | CG11881-PA | 1..1962 | 17..1978 | 9810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt6-RA | 2196 | CG11881-RA | 82..2043 | 17..1978 | 9810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29130030..29130891 | 878..17 | 4310 | 100 | Minus |
| 3R | 32079331 | 3R | 29128946..29129468 | 1835..1313 | 2615 | 100 | Minus |
| 3R | 32079331 | 3R | 29129529..29129965 | 1313..877 | 2185 | 100 | Minus |
| 3R | 32079331 | 3R | 29128737..29128880 | 1978..1835 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:32:56 has no hits.
BO04873.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:32 Download gff for
BO04873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt6-RA | 39..2000 | 17..1978 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:54 Download gff for
BO04873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt6-RA | 82..2043 | 17..1980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:34 Download gff for
BO04873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt6-RA | 39..2000 | 17..1980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:45 Download gff for
BO04873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt6-RA | 82..2043 | 17..1980 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:45 Download gff for
BO04873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29128735..29128880 | 1835..1980 | 98 | <- | Minus |
| 3R | 29128947..29129467 | 1314..1834 | 100 | <- | Minus |
| 3R | 29129529..29129963 | 879..1313 | 100 | <- | Minus |
| 3R | 29130030..29130891 | 17..878 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:54 Download gff for
BO04873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24954457..24954602 | 1835..1980 | 98 | <- | Minus |
| arm_3R | 24954669..24955189 | 1314..1834 | 100 | <- | Minus |
| arm_3R | 24955251..24955685 | 879..1313 | 100 | <- | Minus |
| arm_3R | 24955752..24956613 | 17..878 | 100 | | Minus |
BO04873.pep Sequence
Translation from 16 to 1996
> BO04873.pep
MDRTIIAPWKAEEKEQSEKLHRKLQGLALVHPLPDELRKLIAWDMFLKPN
QVAFVHVMHYLFRLLDPAEFKRRFFWPITDKKSEANFRSSTVEYLKHLNE
KHQLHWANIKSYLVVMPGGMRFINFLLEFVGFVIQELIKQREKSLGLEAG
TPNVSAKVMARQNAVMKEYASSYVVNLEENTALLRDKTQKIRRLMADLSA
DMGVPEEQLADDGFLDEFEATAALGVERVITQPTERKFDLEASLCGLKEA
IDLFQVKQAENNQSKEAVEKALRGMRVLFDCDAVTEGDFYDPLGASKMDA
LLNGFNRISGTIAEQLDANDHYNESNAFVTTDLQALRVELSQSEVQLNNL
LKKLNEPSKKDKGSANASGSARVQTLQPATPRFESVISSKFVSTPPIRID
MGGGGGRNAPVRLALQDDFNGKQFDALSNSLLAPAPPRSARKLKALDQST
GIDLNGTLNRSKINDPMQMLRTIHKNTSKVKAAPQANLSSLGSKWKQMQA
SFGFDEAPVPGAAVISPQTSPTDPSDPFTPLSGSECTRIERIPRTSENNT
SLIAKSAAVIKVLEVSRNVLNLSTSPSGRLDALVPHTESHQQDVAPRLQL
NDRTINDSLQLDPDFNIENDKNAFNVSHKFDFDQIGGEDDLQNISDSVLK
DIIFASFLDH
BO04873.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt6-PA | 654 | CG11881-PA | 1..654 | 1..654 | 3329 | 100 | Plus |
