Clone Sequence Records
BO04874.3prime Sequence
933 bp (834 high quality bases) assembled on 2005-12-02
> BO04874.3prime
ATGGTCTAGAAAGCTTGCATTCGAACTACTGCTTTCGTCGCCATCGTTCA
CAAATTCAAAGGCCCTTCTGGACCGGAAAGCGTGATAGGGTCCTTGCTTC
GGCTGTCCTGCTTGAAATTCACTCCTAATCCTTGAGACCACTGCACCACT
CTGCGGTGAATAGTTTGCCTTGAAGATCTTTAGGAATGACGGAATGGGAG
GCACAATGCCATCCGTATGAAACTGAACAATCCCCTGGATGTGTTGAGGT
CGCAAGAGGCTGCATAGCTGCCGAAGATGCATCCTGGTCGGAGTCGGTGT
CCACTTTAGTTCCTTTAGATCCAAGGAAACTACCTTTTGATAGTGATTAA
AGTCCGTCGGGCAACCGCTGACGAAAACCCTTGGTACATAATTTTCCTCC
AGAAAACGCTCCAGATCGATGCTAAGGCACTCATAGCTTTTTGCAATGTG
GTCGCCCAAATGAATATGCCCGCGAAGACTTGTGTGTGCCAATCTCCATA
ACATTTCCTCGTAGCCAAATTTTGGCACTTTCAGGTGCACCATACTCTGG
TCATTTCTTGCTCCGAGATCCTCGATGAAATGTGCCATCTCATCAAAATC
AATATGATCAAACGGCAAATTTACAGAGGACAGATTCAGATACAGCTGCT
CGGTTCCCTGGGCGATCCAAGAGTTGAAGACAGAGTTGCCCAGTAGACGA
CCAAGATTATCCAGCCTCATAGCCGAGTAGCAGTACAGCAATCTGTTACC
CTGCTGCCGCCGGATAAGCAGAATGAGGCTGTGTCCCAGATGACTTCCAG
AGCATAGCATCCCTTCCAACCGTTTTCCGTCTTTCAGAAGCAGTGCGAAG
GGCTGGCCCTCCTCCACACAAGGAAGTCCTGTTCCCGAAACGTCGCTTTG
CGGGATTGCAGATACTGAAACAGCTGGGTGGCC
BO04874.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7341-PA | 1074 | CG7341-RA | 223..1071 | 867..19 | 4245 | 100 | Minus |
| CG7341-PB | 1074 | CG7341-RB | 223..1071 | 867..19 | 4245 | 100 | Minus |
| CG7341-PA | 1074 | CG7341-RA | 156..196 | 933..893 | 205 | 100 | Minus |
| CG7341-PB | 1074 | CG7341-RB | 156..196 | 933..893 | 205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7341-RB | 1455 | CG7341-RB | 424..1339 | 933..19 | 4510 | 99.7 | Minus |
| CG7341-RA | 1436 | CG7341-RA | 405..1320 | 933..19 | 4510 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:17:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18119972..18120887 | 933..19 | 4455 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:17:38 has no hits.
BO04874.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:57 Download gff for
BO04874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7341-PB | 156..1074 | 18..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:14 Download gff for
BO04874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7341-PB | 156..1074 | 18..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:08:07 Download gff for
BO04874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7341-RA | 405..1326 | 11..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:20:58 Download gff for
BO04874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7341-RA | 405..1326 | 11..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:20:58 Download gff for
BO04874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18119972..18120893 | 11..933 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:08:07 Download gff for
BO04874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18113072..18113993 | 11..933 | 99 | | Minus |
BO04874.5prime Sequence
901 bp (707 high quality bases) assembled on 2005-12-02
> BO04874.5prime
GAAGTTATCAGTCGACATGCGACCCAAGGATCACCCTGATCTGCACTTCG
ACGTGATTCCCAAGCTCTACGATGCCCATTCCAAGGTGTTTCTAACCAGC
TTGTGCGATGTGGATGAGCAGCTGAAACTATTGCCACGCCGATTCTGTCG
GATGTACACCACTCGGCCACTGGCCACCCAGCTGTTTCAGTATCTGCAAT
CCCGCAAAGCGAACGTTTCGGAACAGGACTTCCTTGTGGTGGAGGAGGGC
CAGCCCTTCGCACTGCTTCTGAAAGACGGAAAACGGTTGGAAGGGATGCT
ATGCTCTGGAAGTCATCTGGGACACAGCCTCATTCTGCTTATCCGGCGGC
AGCAGGGTAACAGATTGCTGTACTGCTACTCGGCTATGAGGCTGGATAAT
CTTGGTCGTCTACTGGGCAACTCTGTCTTCAACTCTTGGATCGCCCAGGG
AACCGAGCAGCTGTATCTGAATCTGTCCTCTGTAAATTTGCCGTTTGATC
ATATTGATTTTGATGAGATGGCACATTTCATCGAGGATCTCGGAGCAAGA
AATGACCAGAGTATGGTGCACCTGAAAGTGCCAAAATTTGGCTACGAGGA
AATGTTATGGAGATTGGCACACACAAGTCTTCGCGGGCATATTCATTTGG
GCGACCACATTGCAAAAAGCTATGAGTGCCTTAGCATCGATCTGGAGCGT
TTTCTGGAGGAAAATTATGTACCAAGGGTTTTCGTCAGCGGTTGCCCGAC
GGACTTTAATCACTATCAAAAGGTAGTTTCCTTGGATCTAAAGGAACTAA
AGTGGACACCGACTCCGACCAGGATGCATCTTCGGCAGCTATGCAGCCTC
TTGCGACCCTCACACATCCAGGGGGATGTTCAGTTTCATACGGATGGCAT
T
BO04874.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7341-PA | 1074 | CG7341-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
| CG7341-PB | 1074 | CG7341-RB | 1..842 | 17..858 | 4210 | 100 | Plus |
| CG7341-PA | 1074 | CG7341-RA | 846..885 | 862..901 | 150 | 95 | Plus |
| CG7341-PB | 1074 | CG7341-RB | 846..885 | 862..901 | 150 | 95 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7341-RB | 1455 | CG7341-RB | 269..1153 | 17..901 | 4350 | 99.5 | Plus |
| CG7341-RA | 1436 | CG7341-RA | 250..1134 | 17..901 | 4350 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18119817..18120701 | 17..901 | 4350 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:42:03 has no hits.
BO04874.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:59 Download gff for
BO04874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7341-PB | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:15 Download gff for
BO04874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7341-PB | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:49 Download gff for
BO04874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7341-RA | 242..1134 | 8..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:51 Download gff for
BO04874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7341-RA | 242..1134 | 8..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:51 Download gff for
BO04874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18119809..18120701 | 8..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:49 Download gff for
BO04874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18112909..18113801 | 8..901 | 99 | | Plus |
BO04874.complete Sequence
1105 bp (1105 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629909
> BO04874.complete
GAAGTTATCAGTCGACATGCGACCCAAGGATCACCCTGATCTGCACTTCG
ACGTGATTCCCAAGCTCTACGATGCCCATTCCAAGGTGTTTCTAACCAGC
TTGTGCGATGTGGATGAGCAGCTGAAACTATTGCCACGCCGATTCTGTCG
GATGTACACCACTCGGCCACTGGCCACCCAGCTGTTTCAGTATCTGCAAT
CCCGCAAAGCGAACGTTTCGGAACAGGACTTCCTTGTGGTGGAGGAGGGC
CAGCCCTTCGCACTGCTTCTGAAAGACGGAAAACGGTTGGAAGGGATGCT
ATGCTCTGGAAGTCATCTGGGACACAGCCTCATTCTGCTTATCCGGCGGC
AGCAGGGTAACAGATTGCTGTACTGCTACTCGGCTATGAGGCTGGATAAT
CTTGGTCGTCTACTGGGCAACTCTGTCTTCAACTCTTGGATCGCCCAGGG
AACCGAGCAGCTGTATCTGAATCTGTCCTCTGTAAATTTGCCGTTTGATC
ATATTGATTTTGATGAGATGGCACATTTCATCGAGGATCTCGGAGCAAGA
AATGACCAGAGTATGGTGCACCTGAAAGTGCCAAAATTTGGCTACGAGGA
AATGTTATGGAGATTGGCACACACAAGTCTTCGCGGGCATATTCATTTGG
GCGACCACATTGCAAAAAGCTATGAGTGCCTTAGCATCGATCTGGAGCGT
TTTCTGGAGGAAAATTATGTACCAAGGGTTTTCGTCAGCGGTTGCCCGAC
GGACTTTAATCACTATCAAAAGGTAGTTTCCTTGGATCTAAAGGAACTAA
AGTGGACACCGACTCCGACCAGGATGCATCTTCGGCAGCTATGCAGCCTC
TTGCGACCTCAACACATCCAGGGGATTGTTCAGTTTCATACGGATGGCAT
TGTGCCTCCCATTCCGTCATTCCTAAAGATCTTCAAGGCAAACTATTCAC
CGCAGAGTGGTGCAGTGGTCTCAAGGATTAGGAGTGAATTTCAAGCAGGA
CAGCCGAAGCAAGGACCCTATCACGCTTTCCGGTCCAGAAGGGCCTTTGA
ATTTGTGAACGATGGCGACGAAAGCAGTAGTTCGAATGCAAGCTTTCTAG
ACCAT
BO04874.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7341-RB | 1074 | CG7341-PB | 1..1071 | 17..1087 | 5355 | 100 | Plus |
| CG7341-RA | 1074 | CG7341-PA | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7341-RB | 1455 | CG7341-RB | 269..1339 | 17..1087 | 5355 | 100 | Plus |
| CG7341-RA | 1436 | CG7341-RA | 250..1320 | 17..1087 | 5355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18119817..18120887 | 17..1087 | 5355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:31:58 has no hits.
BO04874.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:12 Download gff for
BO04874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7341-RB | 1..1074 | 17..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:06:37 Download gff for
BO04874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7341-RB | 255..1339 | 8..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:25 Download gff for
BO04874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7341-RA | 250..1320 | 17..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:12 Download gff for
BO04874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7341-RB | 255..1339 | 8..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:31 Download gff for
BO04874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7341-RA | 250..1320 | 17..1089 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:31 Download gff for
BO04874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18119817..18120887 | 17..1089 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:25 Download gff for
BO04874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18112917..18113987 | 17..1089 | 99 | | Plus |
BO04874.pep Sequence
Translation from 16 to 1105
> BO04874.pep
MRPKDHPDLHFDVIPKLYDAHSKVFLTSLCDVDEQLKLLPRRFCRMYTTR
PLATQLFQYLQSRKANVSEQDFLVVEEGQPFALLLKDGKRLEGMLCSGSH
LGHSLILLIRRQQGNRLLYCYSAMRLDNLGRLLGNSVFNSWIAQGTEQLY
LNLSSVNLPFDHIDFDEMAHFIEDLGARNDQSMVHLKVPKFGYEEMLWRL
AHTSLRGHIHLGDHIAKSYECLSIDLERFLEENYVPRVFVSGCPTDFNHY
QKVVSLDLKELKWTPTPTRMHLRQLCSLLRPQHIQGIVQFHTDGIVPPIP
SFLKIFKANYSPQSGAVVSRIRSEFQAGQPKQGPYHAFRSRRAFEFVNDG
DESSSSNASFLDH
BO04874.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7341-PB | 357 | CG7341-PB | 1..357 | 1..357 | 1893 | 100 | Plus |
| CG7341-PA | 357 | CG7341-PA | 1..357 | 1..357 | 1893 | 100 | Plus |
