Clone BO04875 Report

Search the DGRC for BO04875

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCyp4ad1-RA
Protein status:BO04875.pep: validated full length
Sequenced Size:1582

Clone Sequence Records

BO04875.3prime Sequence

859 bp (809 high quality bases) assembled on 2005-12-02

> BO04875.3prime
ATGGTCTAGAAAGCTTGCTCGCTTTCTAAGCCTAATCTGGATACCATTTT
CCGATTTAAGCGTGACACGAATATTCAACACAGGATCGTACTCGCTCTGT
GGGACACAATCCTCGCGGGAATGGTCGTTAATTCCCGGAGGAAGTCCATC
CACGGCAGGCAGAATTTCAAAGCGGCGCAGCAATTGGGACAGCAAAGCCT
TCATCTGGTACATGGCGAACTTCTCGGCAATGCAGCGCCTTGGACCTGCA
CTAAATGGAACGCTCTTGAAAGCCTCGATGCCCACGTTTCCAGTTGGGTT
CTCGAATCTCTCTGGCCGGAATGTGCATGGATCGTCGAAGTACTTTTCGT
TGTAGCCCATGGCAATGAGGCACATGATCACCGTGGTGCACTTGGCCACC
TTGGTGCCATTGATATCGATGGGATTGCGGTTTGTTCGAGCAATCAGTGG
GACAGAAGGGTACAAGCGCAGGGTCTCCCTAATAATCAACTCTAGATAAT
GCATCTGATCCAGCCGAGCCAAGTCCGCTTCCCCCGCGAAGTTCTCGCCA
AAGATGCGTCGCTGTTCCTCGGCAGCTTTTTGCTGAATCTCCGAGTGACG
GGAAAGGGTGTACAGCGTGAAAGATATGGCGGCGGCAATGGGATCGTGAC
CTGTAAATATAAATGTGGACACTTCCTCGATAATCTCGCGCTCCTTGAGG
ACTTTCCCATCGAGCTTGGCGGTCAGCAGGACGTCCAGGAAGGGTTTGTT
GATTGGCTGGCCCTGCTGGCACGTGTTTTCCGCAGCCAACTGGTGTCGCC
GTTGCGAGATAATCCGATTCAGTTCGCTGCGCAGGAGCGACAGAGCGCGG
CGCTGCTTC

BO04875.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2110-PA 1551 Cyp4ad1-RA 708..1548 859..19 4205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ad1-RB 1227 CG2110-RB 357..1197 859..19 4205 100 Minus
Cyp4ad1-RA 1698 CG2110-RA 762..1602 859..19 4205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8439992..8440232 411..651 1205 100 Plus
2R 25286936 2R 8439491..8439700 19..228 1050 100 Plus
2R 25286936 2R 8439755..8439937 228..410 915 100 Plus
2R 25286936 2R 8440349..8440512 651..814 820 100 Plus
2R 25286936 2R 8440571..8440616 814..859 230 100 Plus
Blast to na_te.dros performed on 2015-02-12 14:11:08 has no hits.

BO04875.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:59 Download gff for BO04875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2110-PA 708..1551 16..859 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:16 Download gff for BO04875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2110-PA 708..1551 16..859 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:06:07 Download gff for BO04875.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 762..1608 11..859 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:09 Download gff for BO04875.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 762..1608 11..859 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:09 Download gff for BO04875.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8439992..8440232 411..651 100 <- Plus
2R 8440350..8440511 652..813 100 <- Plus
2R 8440571..8440616 814..859 100   Plus
2R 8439485..8439699 11..227 98 <- Plus
2R 8439755..8439937 228..410 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:06:07 Download gff for BO04875.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4327260..4327442 228..410 100 <- Plus
arm_2R 4326990..4327204 11..227 98 <- Plus
arm_2R 4327497..4327737 411..651 100 <- Plus
arm_2R 4327855..4328016 652..813 100 <- Plus
arm_2R 4328076..4328121 814..859 100   Plus

BO04875.5prime Sequence

818 bp (817 high quality bases) assembled on 2005-12-02

> BO04875.5prime
GAAGTTATCAGTCGACATGTTTCTAATAGCCATTGCCATTATTTTGGCCA
CCATTTTGGTGTTCAAGGGAGTGAGGATATTCAACTACATAGACCACATG
GCTGGCATCATGGAGATGATCCCAGGACCCACGCCATACCCCTTCGTGGG
TAATCTGTTCCAGTTCGGTCTCAAGCCAGCCGAATACCCCAAAAAGGTCC
TGCAATATTGTCGGAAATATGACTTCCAGGGATTCCGCTCCCTGGTCTTC
CTGCAGTACCACATGATGCTGAGTGATCCGGCTGAAATTCAGAACATCCT
GTCGAGCTCATCGCTGCTGTACAAGGAGCACTTGTACTCCTTTCTGAGGC
CCTGGCTGGGCGATGGCCTCCTCACCAGTTCCGGTGCCCGCTGGCTAAAG
CACCAGAAGCTCTACGCCCCTGCCTTCGAGCGCTCGGCCATCGAGGGTTA
CCTGCGAGTGGTCCACCGGACGGGCGGACAGTTCGTCCAGAAACTCGACG
TACTGTCGGATACACAGGAAGTCTTCGATGCCCAGGAGCTGGTGGCTAAG
TGTACCCTGGATATTGTGTGTGAAAACGCCACTGGGCAGGACAGCAGCTC
ACTGAATGGAGAGACTTCGGATTTGCATGGAGCCATCAAGGACTTATGCG
ATGTGGTCCAGGAGCGCACCTTCAGCATCGTGAAGCGTTTCGACGCCCTC
TTCCGCCTCACCTCCTACTACATGAAGCAGCGCCGCGCTCTGTCGCTCCT
GCGCAGCGAACTGAATCGGATTATCTCGCAACGGCGACACCAGTTGGCTG
CGGAAAACACGTGCCAGC

BO04875.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2110-PA 1551 Cyp4ad1-RA 1..802 17..818 4010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ad1-RA 1698 CG2110-RA 54..856 16..818 4015 100 Plus
Cyp4ad1-RB 1227 CG2110-RB 204..451 571..818 1240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8441382..8441664 572..290 1415 100 Minus
2R 25286936 2R 8442587..8442753 182..16 835 100 Minus
2R 25286936 2R 8440571..8440697 769..643 635 100 Minus
2R 25286936 2R 8441715..8441825 292..182 555 100 Minus
2R 25286936 2R 8440755..8440825 642..572 355 100 Minus
2R 25286936 2R 8440463..8440512 818..769 250 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:14:33 has no hits.

BO04875.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:00 Download gff for BO04875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2110-PA 1..802 17..818 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:18 Download gff for BO04875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2110-PA 1..802 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:30 Download gff for BO04875.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 54..856 16..818 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:29:37 Download gff for BO04875.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 54..856 16..818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:29:37 Download gff for BO04875.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8442587..8442753 16..182 100   Minus
2R 8440463..8440511 770..818 100 <- Minus
2R 8440571..8440697 643..769 100 <- Minus
2R 8440755..8440824 573..642 100 <- Minus
2R 8441382..8441661 293..572 100 <- Minus
2R 8441715..8441824 183..292 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:30 Download gff for BO04875.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4327968..4328016 770..818 100 <- Minus
arm_2R 4328076..4328202 643..769 100 <- Minus
arm_2R 4328260..4328329 573..642 100 <- Minus
arm_2R 4328887..4329166 293..572 100 <- Minus
arm_2R 4329220..4329329 183..292 100 <- Minus
arm_2R 4330092..4330258 16..182 100   Minus

BO04875.complete Sequence

1582 bp (1582 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629910

> BO04875.complete
GAAGTTATCAGTCGACATGTTTCTAATAGCCATTGCCATTATTTTGGCCA
CCATTTTGGTGTTCAAGGGAGTGAGGATATTCAACTACATAGACCACATG
GCTGGCATCATGGAGATGATCCCAGGACCCACGCCATACCCCTTCGTGGG
TAATCTGTTCCAGTTCGGTCTCAAGCCAGCCGAATACCCCAAAAAGGTCC
TGCAATATTGTCGGAAATATGACTTCCAGGGATTCCGCTCCCTGGTCTTC
CTGCAGTACCACATGATGCTGAGTGATCCGGCTGAAATTCAGAACATCCT
GTCGAGCTCATCGCTGCTGTACAAGGAGCACTTGTACTCCTTTCTGAGGC
CCTGGCTGGGCGATGGCCTCCTCACCAGTTCCGGTGCCCGCTGGCTAAAG
CACCAGAAGCTCTACGCCCCTGCCTTCGAGCGCTCGGCCATCGAGGGTTA
CCTGCGAGTGGTCCACCGGACGGGCGGACAGTTCGTCCAGAAACTCGACG
TACTGTCGGATACACAGGAAGTCTTCGATGCCCAGGAGCTGGTGGCTAAG
TGTACCCTGGATATTGTGTGTGAAAACGCCACTGGGCAGGACAGCAGCTC
ACTGAATGGAGAGACTTCGGATTTGCATGGAGCCATCAAGGACTTATGCG
ATGTGGTCCAGGAGCGCACCTTCAGCATCGTGAAGCGTTTCGACGCCCTC
TTCCGCCTCACCTCCTACTACATGAAGCAGCGCCGCGCTCTGTCGCTCCT
GCGCAGCGAACTGAATCGGATTATCTCGCAACGGCGACACCAGTTGGCTG
CGGAAAACACGTGCCAGCAGGGCCAGCCAATCAACAAACCCTTCCTGGAC
GTCCTGCTGACCGCCAAGCTCGATGGGAAAGTCCTCAAGGAGCGCGAGAT
TATCGAGGAAGTGTCCACATTTATATTTACAGGTCACGATCCCATTGCCG
CCGCCATATCTTTCACGCTGTACACCCTTTCCCGTCACTCGGAGATTCAG
CAAAAAGCTGCCGAGGAACAGCGACGCATCTTTGGCGAGAACTTCGCGGG
GGAAGCGGACTTGGCTCGGCTGGATCAGATGCATTATCTAGAGTTGATTA
TTAGGGAGACCCTGCGCTTGTACCCTTCTGTCCCACTGATTGCTCGAACA
AACCGCAATCCCATCGATATCAATGGCACCAAGGTGGCCAAGTGCACCAC
GGTGATCATGTGCCTCATTGCCATGGGCTACAACGAAAAGTACTTCGACG
ATCCATGCACATTCCGGCCAGAGAGATTCGAGAACCCAACTGGAAACGTG
GGCATCGAGGCTTTCAAGAGCGTTCCATTTAGTGCAGGTCCAAGGCGCTG
CATTGCCGAGAAGTTCGCCATGTACCAGATGAAGGCTTTGCTGTCCCAAT
TGCTGCGCCGCTTTGAAATTCTGCCTGCCGTGGATGGACTTCCTCCGGGA
ATTAACGACCATTCCCGCGAGGATTGTGTCCCACAGAGCGAGTACGATCC
TGTGTTGAATATTCGTGTCACGCTTAAATCGGAAAATGGTATCCAGATTA
GGCTTAGAAAGCGAGCAAGCTTTCTAGACCAT

BO04875.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ad1-RA 1551 CG2110-PA 1..1548 17..1564 7740 100 Plus
Cyp4ad1-RB 846 CG2110-PB 1..843 722..1564 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ad1-RA 1698 CG2110-RA 54..1602 16..1564 7745 100 Plus
Cyp4ad1-RB 1227 CG2110-RB 204..1197 571..1564 4970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8441382..8441664 572..290 1415 100 Minus
2R 25286936 2R 8439992..8440232 1172..932 1205 100 Minus
2R 25286936 2R 8439491..8439700 1564..1355 1050 100 Minus
2R 25286936 2R 8439755..8439937 1355..1173 915 100 Minus
2R 25286936 2R 8442587..8442753 182..16 835 100 Minus
2R 25286936 2R 8440349..8440512 932..769 820 100 Minus
2R 25286936 2R 8440571..8440697 769..643 635 100 Minus
2R 25286936 2R 8441715..8441825 292..182 555 100 Minus
2R 25286936 2R 8440755..8440825 642..572 355 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:50:53 has no hits.

BO04875.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:44 Download gff for BO04875.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 1..1551 17..1567 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:17 Download gff for BO04875.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 27..1581 16..1572 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:56 Download gff for BO04875.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 61..1602 23..1566 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:44 Download gff for BO04875.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 27..1581 16..1572 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:51 Download gff for BO04875.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 61..1602 23..1566 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:51 Download gff for BO04875.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8441382..8441661 293..572 100 <- Minus
2R 8441715..8441824 183..292 100 <- Minus
2R 8442587..8442746 23..182 100   Minus
2R 8439755..8439937 1173..1355 100 <- Minus
2R 8439992..8440232 932..1172 100 <- Minus
2R 8440350..8440511 770..931 100 <- Minus
2R 8440571..8440697 643..769 100 <- Minus
2R 8440755..8440824 573..642 100 <- Minus
2R 8439488..8439699 1356..1566 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:56 Download gff for BO04875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4330092..4330251 23..182 100   Minus
arm_2R 4326993..4327204 1356..1566 99 <- Minus
arm_2R 4327260..4327442 1173..1355 100 <- Minus
arm_2R 4327497..4327737 932..1172 100 <- Minus
arm_2R 4327855..4328016 770..931 100 <- Minus
arm_2R 4328076..4328202 643..769 100 <- Minus
arm_2R 4328260..4328329 573..642 100 <- Minus
arm_2R 4328887..4329166 293..572 100 <- Minus
arm_2R 4329220..4329329 183..292 100 <- Minus

BO04875.pep Sequence

Translation from 16 to 1582

> BO04875.pep
MFLIAIAIILATILVFKGVRIFNYIDHMAGIMEMIPGPTPYPFVGNLFQF
GLKPAEYPKKVLQYCRKYDFQGFRSLVFLQYHMMLSDPAEIQNILSSSSL
LYKEHLYSFLRPWLGDGLLTSSGARWLKHQKLYAPAFERSAIEGYLRVVH
RTGGQFVQKLDVLSDTQEVFDAQELVAKCTLDIVCENATGQDSSSLNGET
SDLHGAIKDLCDVVQERTFSIVKRFDALFRLTSYYMKQRRALSLLRSELN
RIISQRRHQLAAENTCQQGQPINKPFLDVLLTAKLDGKVLKEREIIEEVS
TFIFTGHDPIAAAISFTLYTLSRHSEIQQKAAEEQRRIFGENFAGEADLA
RLDQMHYLELIIRETLRLYPSVPLIARTNRNPIDINGTKVAKCTTVIMCL
IAMGYNEKYFDDPCTFRPERFENPTGNVGIEAFKSVPFSAGPRRCIAEKF
AMYQMKALLSQLLRRFEILPAVDGLPPGINDHSREDCVPQSEYDPVLNIR
VTLKSENGIQIRLRKRASFLDH

BO04875.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ad1-PA 516 CG2110-PA 1..516 1..516 2662 100 Plus
Cyp4ad1-PB 281 CG2110-PB 1..281 236..516 1441 100 Plus
Cyp4e2-PB 526 CG2060-PB 29..525 31..516 861 37.3 Plus
Cyp4e2-PA 526 CG2060-PA 29..525 31..516 861 37.3 Plus
Cyp4e3-PA 526 CG4105-PA 1..526 1..518 847 34.4 Plus