Clone Sequence Records
BO04875.3prime Sequence
859 bp (809 high quality bases) assembled on 2005-12-02
> BO04875.3prime
ATGGTCTAGAAAGCTTGCTCGCTTTCTAAGCCTAATCTGGATACCATTTT
CCGATTTAAGCGTGACACGAATATTCAACACAGGATCGTACTCGCTCTGT
GGGACACAATCCTCGCGGGAATGGTCGTTAATTCCCGGAGGAAGTCCATC
CACGGCAGGCAGAATTTCAAAGCGGCGCAGCAATTGGGACAGCAAAGCCT
TCATCTGGTACATGGCGAACTTCTCGGCAATGCAGCGCCTTGGACCTGCA
CTAAATGGAACGCTCTTGAAAGCCTCGATGCCCACGTTTCCAGTTGGGTT
CTCGAATCTCTCTGGCCGGAATGTGCATGGATCGTCGAAGTACTTTTCGT
TGTAGCCCATGGCAATGAGGCACATGATCACCGTGGTGCACTTGGCCACC
TTGGTGCCATTGATATCGATGGGATTGCGGTTTGTTCGAGCAATCAGTGG
GACAGAAGGGTACAAGCGCAGGGTCTCCCTAATAATCAACTCTAGATAAT
GCATCTGATCCAGCCGAGCCAAGTCCGCTTCCCCCGCGAAGTTCTCGCCA
AAGATGCGTCGCTGTTCCTCGGCAGCTTTTTGCTGAATCTCCGAGTGACG
GGAAAGGGTGTACAGCGTGAAAGATATGGCGGCGGCAATGGGATCGTGAC
CTGTAAATATAAATGTGGACACTTCCTCGATAATCTCGCGCTCCTTGAGG
ACTTTCCCATCGAGCTTGGCGGTCAGCAGGACGTCCAGGAAGGGTTTGTT
GATTGGCTGGCCCTGCTGGCACGTGTTTTCCGCAGCCAACTGGTGTCGCC
GTTGCGAGATAATCCGATTCAGTTCGCTGCGCAGGAGCGACAGAGCGCGG
CGCTGCTTC
BO04875.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2110-PA | 1551 | Cyp4ad1-RA | 708..1548 | 859..19 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ad1-RB | 1227 | CG2110-RB | 357..1197 | 859..19 | 4205 | 100 | Minus |
Cyp4ad1-RA | 1698 | CG2110-RA | 762..1602 | 859..19 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8439992..8440232 | 411..651 | 1205 | 100 | Plus |
2R | 25286936 | 2R | 8439491..8439700 | 19..228 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 8439755..8439937 | 228..410 | 915 | 100 | Plus |
2R | 25286936 | 2R | 8440349..8440512 | 651..814 | 820 | 100 | Plus |
2R | 25286936 | 2R | 8440571..8440616 | 814..859 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 14:11:08 has no hits.
BO04875.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:11:59 Download gff for
BO04875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2110-PA | 708..1551 | 16..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:16 Download gff for
BO04875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2110-PA | 708..1551 | 16..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:06:07 Download gff for
BO04875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ad1-RA | 762..1608 | 11..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:09 Download gff for
BO04875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ad1-RA | 762..1608 | 11..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:09 Download gff for
BO04875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8439992..8440232 | 411..651 | 100 | <- | Plus |
2R | 8440350..8440511 | 652..813 | 100 | <- | Plus |
2R | 8440571..8440616 | 814..859 | 100 | | Plus |
2R | 8439485..8439699 | 11..227 | 98 | <- | Plus |
2R | 8439755..8439937 | 228..410 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:06:07 Download gff for
BO04875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4327260..4327442 | 228..410 | 100 | <- | Plus |
arm_2R | 4326990..4327204 | 11..227 | 98 | <- | Plus |
arm_2R | 4327497..4327737 | 411..651 | 100 | <- | Plus |
arm_2R | 4327855..4328016 | 652..813 | 100 | <- | Plus |
arm_2R | 4328076..4328121 | 814..859 | 100 | | Plus |
BO04875.5prime Sequence
818 bp (817 high quality bases) assembled on 2005-12-02
> BO04875.5prime
GAAGTTATCAGTCGACATGTTTCTAATAGCCATTGCCATTATTTTGGCCA
CCATTTTGGTGTTCAAGGGAGTGAGGATATTCAACTACATAGACCACATG
GCTGGCATCATGGAGATGATCCCAGGACCCACGCCATACCCCTTCGTGGG
TAATCTGTTCCAGTTCGGTCTCAAGCCAGCCGAATACCCCAAAAAGGTCC
TGCAATATTGTCGGAAATATGACTTCCAGGGATTCCGCTCCCTGGTCTTC
CTGCAGTACCACATGATGCTGAGTGATCCGGCTGAAATTCAGAACATCCT
GTCGAGCTCATCGCTGCTGTACAAGGAGCACTTGTACTCCTTTCTGAGGC
CCTGGCTGGGCGATGGCCTCCTCACCAGTTCCGGTGCCCGCTGGCTAAAG
CACCAGAAGCTCTACGCCCCTGCCTTCGAGCGCTCGGCCATCGAGGGTTA
CCTGCGAGTGGTCCACCGGACGGGCGGACAGTTCGTCCAGAAACTCGACG
TACTGTCGGATACACAGGAAGTCTTCGATGCCCAGGAGCTGGTGGCTAAG
TGTACCCTGGATATTGTGTGTGAAAACGCCACTGGGCAGGACAGCAGCTC
ACTGAATGGAGAGACTTCGGATTTGCATGGAGCCATCAAGGACTTATGCG
ATGTGGTCCAGGAGCGCACCTTCAGCATCGTGAAGCGTTTCGACGCCCTC
TTCCGCCTCACCTCCTACTACATGAAGCAGCGCCGCGCTCTGTCGCTCCT
GCGCAGCGAACTGAATCGGATTATCTCGCAACGGCGACACCAGTTGGCTG
CGGAAAACACGTGCCAGC
BO04875.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2110-PA | 1551 | Cyp4ad1-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ad1-RA | 1698 | CG2110-RA | 54..856 | 16..818 | 4015 | 100 | Plus |
Cyp4ad1-RB | 1227 | CG2110-RB | 204..451 | 571..818 | 1240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8441382..8441664 | 572..290 | 1415 | 100 | Minus |
2R | 25286936 | 2R | 8442587..8442753 | 182..16 | 835 | 100 | Minus |
2R | 25286936 | 2R | 8440571..8440697 | 769..643 | 635 | 100 | Minus |
2R | 25286936 | 2R | 8441715..8441825 | 292..182 | 555 | 100 | Minus |
2R | 25286936 | 2R | 8440755..8440825 | 642..572 | 355 | 100 | Minus |
2R | 25286936 | 2R | 8440463..8440512 | 818..769 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:14:33 has no hits.
BO04875.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:00 Download gff for
BO04875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2110-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:18 Download gff for
BO04875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2110-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:30 Download gff for
BO04875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ad1-RA | 54..856 | 16..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:29:37 Download gff for
BO04875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ad1-RA | 54..856 | 16..818 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:29:37 Download gff for
BO04875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8442587..8442753 | 16..182 | 100 | | Minus |
2R | 8440463..8440511 | 770..818 | 100 | <- | Minus |
2R | 8440571..8440697 | 643..769 | 100 | <- | Minus |
2R | 8440755..8440824 | 573..642 | 100 | <- | Minus |
2R | 8441382..8441661 | 293..572 | 100 | <- | Minus |
2R | 8441715..8441824 | 183..292 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:30 Download gff for
BO04875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4327968..4328016 | 770..818 | 100 | <- | Minus |
arm_2R | 4328076..4328202 | 643..769 | 100 | <- | Minus |
arm_2R | 4328260..4328329 | 573..642 | 100 | <- | Minus |
arm_2R | 4328887..4329166 | 293..572 | 100 | <- | Minus |
arm_2R | 4329220..4329329 | 183..292 | 100 | <- | Minus |
arm_2R | 4330092..4330258 | 16..182 | 100 | | Minus |
BO04875.complete Sequence
1582 bp (1582 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629910
> BO04875.complete
GAAGTTATCAGTCGACATGTTTCTAATAGCCATTGCCATTATTTTGGCCA
CCATTTTGGTGTTCAAGGGAGTGAGGATATTCAACTACATAGACCACATG
GCTGGCATCATGGAGATGATCCCAGGACCCACGCCATACCCCTTCGTGGG
TAATCTGTTCCAGTTCGGTCTCAAGCCAGCCGAATACCCCAAAAAGGTCC
TGCAATATTGTCGGAAATATGACTTCCAGGGATTCCGCTCCCTGGTCTTC
CTGCAGTACCACATGATGCTGAGTGATCCGGCTGAAATTCAGAACATCCT
GTCGAGCTCATCGCTGCTGTACAAGGAGCACTTGTACTCCTTTCTGAGGC
CCTGGCTGGGCGATGGCCTCCTCACCAGTTCCGGTGCCCGCTGGCTAAAG
CACCAGAAGCTCTACGCCCCTGCCTTCGAGCGCTCGGCCATCGAGGGTTA
CCTGCGAGTGGTCCACCGGACGGGCGGACAGTTCGTCCAGAAACTCGACG
TACTGTCGGATACACAGGAAGTCTTCGATGCCCAGGAGCTGGTGGCTAAG
TGTACCCTGGATATTGTGTGTGAAAACGCCACTGGGCAGGACAGCAGCTC
ACTGAATGGAGAGACTTCGGATTTGCATGGAGCCATCAAGGACTTATGCG
ATGTGGTCCAGGAGCGCACCTTCAGCATCGTGAAGCGTTTCGACGCCCTC
TTCCGCCTCACCTCCTACTACATGAAGCAGCGCCGCGCTCTGTCGCTCCT
GCGCAGCGAACTGAATCGGATTATCTCGCAACGGCGACACCAGTTGGCTG
CGGAAAACACGTGCCAGCAGGGCCAGCCAATCAACAAACCCTTCCTGGAC
GTCCTGCTGACCGCCAAGCTCGATGGGAAAGTCCTCAAGGAGCGCGAGAT
TATCGAGGAAGTGTCCACATTTATATTTACAGGTCACGATCCCATTGCCG
CCGCCATATCTTTCACGCTGTACACCCTTTCCCGTCACTCGGAGATTCAG
CAAAAAGCTGCCGAGGAACAGCGACGCATCTTTGGCGAGAACTTCGCGGG
GGAAGCGGACTTGGCTCGGCTGGATCAGATGCATTATCTAGAGTTGATTA
TTAGGGAGACCCTGCGCTTGTACCCTTCTGTCCCACTGATTGCTCGAACA
AACCGCAATCCCATCGATATCAATGGCACCAAGGTGGCCAAGTGCACCAC
GGTGATCATGTGCCTCATTGCCATGGGCTACAACGAAAAGTACTTCGACG
ATCCATGCACATTCCGGCCAGAGAGATTCGAGAACCCAACTGGAAACGTG
GGCATCGAGGCTTTCAAGAGCGTTCCATTTAGTGCAGGTCCAAGGCGCTG
CATTGCCGAGAAGTTCGCCATGTACCAGATGAAGGCTTTGCTGTCCCAAT
TGCTGCGCCGCTTTGAAATTCTGCCTGCCGTGGATGGACTTCCTCCGGGA
ATTAACGACCATTCCCGCGAGGATTGTGTCCCACAGAGCGAGTACGATCC
TGTGTTGAATATTCGTGTCACGCTTAAATCGGAAAATGGTATCCAGATTA
GGCTTAGAAAGCGAGCAAGCTTTCTAGACCAT
BO04875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ad1-RA | 1551 | CG2110-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
Cyp4ad1-RB | 846 | CG2110-PB | 1..843 | 722..1564 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ad1-RA | 1698 | CG2110-RA | 54..1602 | 16..1564 | 7745 | 100 | Plus |
Cyp4ad1-RB | 1227 | CG2110-RB | 204..1197 | 571..1564 | 4970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8441382..8441664 | 572..290 | 1415 | 100 | Minus |
2R | 25286936 | 2R | 8439992..8440232 | 1172..932 | 1205 | 100 | Minus |
2R | 25286936 | 2R | 8439491..8439700 | 1564..1355 | 1050 | 100 | Minus |
2R | 25286936 | 2R | 8439755..8439937 | 1355..1173 | 915 | 100 | Minus |
2R | 25286936 | 2R | 8442587..8442753 | 182..16 | 835 | 100 | Minus |
2R | 25286936 | 2R | 8440349..8440512 | 932..769 | 820 | 100 | Minus |
2R | 25286936 | 2R | 8440571..8440697 | 769..643 | 635 | 100 | Minus |
2R | 25286936 | 2R | 8441715..8441825 | 292..182 | 555 | 100 | Minus |
2R | 25286936 | 2R | 8440755..8440825 | 642..572 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:50:53 has no hits.
BO04875.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:44 Download gff for
BO04875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ad1-RA | 1..1551 | 17..1567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:17 Download gff for
BO04875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ad1-RA | 27..1581 | 16..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:56 Download gff for
BO04875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ad1-RA | 61..1602 | 23..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:44 Download gff for
BO04875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ad1-RA | 27..1581 | 16..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:51 Download gff for
BO04875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ad1-RA | 61..1602 | 23..1566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:51 Download gff for
BO04875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8441382..8441661 | 293..572 | 100 | <- | Minus |
2R | 8441715..8441824 | 183..292 | 100 | <- | Minus |
2R | 8442587..8442746 | 23..182 | 100 | | Minus |
2R | 8439755..8439937 | 1173..1355 | 100 | <- | Minus |
2R | 8439992..8440232 | 932..1172 | 100 | <- | Minus |
2R | 8440350..8440511 | 770..931 | 100 | <- | Minus |
2R | 8440571..8440697 | 643..769 | 100 | <- | Minus |
2R | 8440755..8440824 | 573..642 | 100 | <- | Minus |
2R | 8439488..8439699 | 1356..1566 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:56 Download gff for
BO04875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4330092..4330251 | 23..182 | 100 | | Minus |
arm_2R | 4326993..4327204 | 1356..1566 | 99 | <- | Minus |
arm_2R | 4327260..4327442 | 1173..1355 | 100 | <- | Minus |
arm_2R | 4327497..4327737 | 932..1172 | 100 | <- | Minus |
arm_2R | 4327855..4328016 | 770..931 | 100 | <- | Minus |
arm_2R | 4328076..4328202 | 643..769 | 100 | <- | Minus |
arm_2R | 4328260..4328329 | 573..642 | 100 | <- | Minus |
arm_2R | 4328887..4329166 | 293..572 | 100 | <- | Minus |
arm_2R | 4329220..4329329 | 183..292 | 100 | <- | Minus |
BO04875.pep Sequence
Translation from 16 to 1582
> BO04875.pep
MFLIAIAIILATILVFKGVRIFNYIDHMAGIMEMIPGPTPYPFVGNLFQF
GLKPAEYPKKVLQYCRKYDFQGFRSLVFLQYHMMLSDPAEIQNILSSSSL
LYKEHLYSFLRPWLGDGLLTSSGARWLKHQKLYAPAFERSAIEGYLRVVH
RTGGQFVQKLDVLSDTQEVFDAQELVAKCTLDIVCENATGQDSSSLNGET
SDLHGAIKDLCDVVQERTFSIVKRFDALFRLTSYYMKQRRALSLLRSELN
RIISQRRHQLAAENTCQQGQPINKPFLDVLLTAKLDGKVLKEREIIEEVS
TFIFTGHDPIAAAISFTLYTLSRHSEIQQKAAEEQRRIFGENFAGEADLA
RLDQMHYLELIIRETLRLYPSVPLIARTNRNPIDINGTKVAKCTTVIMCL
IAMGYNEKYFDDPCTFRPERFENPTGNVGIEAFKSVPFSAGPRRCIAEKF
AMYQMKALLSQLLRRFEILPAVDGLPPGINDHSREDCVPQSEYDPVLNIR
VTLKSENGIQIRLRKRASFLDH
BO04875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ad1-PA | 516 | CG2110-PA | 1..516 | 1..516 | 2662 | 100 | Plus |
Cyp4ad1-PB | 281 | CG2110-PB | 1..281 | 236..516 | 1441 | 100 | Plus |
Cyp4e2-PB | 526 | CG2060-PB | 29..525 | 31..516 | 861 | 37.3 | Plus |
Cyp4e2-PA | 526 | CG2060-PA | 29..525 | 31..516 | 861 | 37.3 | Plus |
Cyp4e3-PA | 526 | CG4105-PA | 1..526 | 1..518 | 847 | 34.4 | Plus |