Clone Sequence Records
BO04878.3prime Sequence
942 bp (821 high quality bases) assembled on 2005-12-02
> BO04878.3prime
ATGGTCTAGAAAGCTTGCCGGTGCTGCGGCTCCCTCGCTTGGATATAGAT
TCACCAGGATGGCGTAATAGTGACATCCGGCGGCCAGCACCACAAACAGA
TGCCAAATGGCATGGGCCATGGGTATCGTGCCGTCCGCCTTGAAGAATAC
AATGCCCAGAATGTAGAAGCCGCCGCCGAACTTGAGCTGCATCATACCGT
GGAAGTGGTGGCCAGTGAACACAACGACTAGAGCGGGTCCCAGGCCCATC
ACCAGATAGAAGAACGTCTCCAGACACTTGTAGCGCTCGTGGAAGACCTG
CTGGTAGGCAATTCCTATGCCCGCCATCAGCCAGATGACCCATTCCATGC
AGAAGAGTATGGCCGAATGATCGGTGTTCTCTAGCGTGAGCCAGGGGAAG
TACGATCCGGCGATGAACACATAGATCATCGCCCTGTCGCAGCGATGGAG
CACGTTCTTGAGCCCCTGATACGTCTGCCAGCCGAGACAGGGCCAGGCCT
TGACATTCTTCGGTGGTTTGTGCTCGGCGCAATAGCAGGAGCAGTGGAAG
AAGGTGGACACCGTGAAGAGCATGCACAGGGCTCCGCCGTAGACCCAAGC
AACCAGATACTGGCTGGCGCTGGAGGAGCGTTCAAACAGCTTGATGGCCG
CAAAAACGGCGGGCAGTATCCAAATGCCGTGAGTAATCACATTGGCCACC
TGCTCGATCTCCGTTGGCTGGTAGGCACAGCCGGGCTTCGCCTTGGCATT
CTTCCACTTGACATTGCGCAACTGCAGTTTGAGATTGGAATTCGACTTGA
TGATAGACTTCCAGAACTTGCTGAAGAGATTCTCGAGGAAGGCGTACTTA
TGCTGCAGATCCTGCATCAGACTGAGGTCTCCATTGCCGTTTCATTCGCA
TTGCGATTCAGTGTACGGATTCCACTTTCGTGGCCGCTTCCT
BO04878.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4615-PA | 942 | CG4615-RA | 65..939 | 893..19 | 4375 | 100 | Minus |
CG4615-PA | 942 | CG4615-RA | 15..64 | 942..893 | 250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4615-RA | 1973 | CG4615-RA | 250..1174 | 942..19 | 4600 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7099377..7099658 | 19..300 | 1410 | 100 | Plus |
X | 23542271 | X | 7100274..7100508 | 709..942 | 1125 | 99.6 | Plus |
X | 23542271 | X | 7099725..7099946 | 296..517 | 1110 | 100 | Plus |
X | 23542271 | X | 7100009..7100201 | 518..710 | 965 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:30:48 has no hits.
BO04878.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:03 Download gff for
BO04878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-PA | 15..942 | 16..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:22 Download gff for
BO04878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-PA | 15..942 | 16..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:01 Download gff for
BO04878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 250..1178 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:36:10 Download gff for
BO04878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 250..1178 | 15..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:36:10 Download gff for
BO04878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7099373..7099655 | 15..297 | 99 | <- | Plus |
X | 7099727..7099946 | 298..517 | 100 | <- | Plus |
X | 7100009..7100199 | 518..708 | 100 | <- | Plus |
X | 7100274..7100508 | 709..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:01 Download gff for
BO04878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6993406..6993688 | 15..297 | 99 | <- | Plus |
arm_X | 6993760..6993979 | 298..517 | 100 | <- | Plus |
arm_X | 6994042..6994232 | 518..708 | 100 | <- | Plus |
arm_X | 6994307..6994541 | 709..942 | 99 | | Plus |
BO04878.5prime Sequence
829 bp (828 high quality bases) assembled on 2005-11-29
> BO04878.5prime
GAAGTTATCAGTCGACATGAGCAACAGCGAAGGAAGCGGCCACGAAAGTG
GAATCCGTACACTGAATCGCAATGCGAATGGAAACGGCAATGGAGACCTC
AGTCTGATGCAGGATCTGCAGCATAAGTACGCCTTCCTCGAGAATCTCTT
CAGCAAGTTCTGGAAGTCTATCATCAAGTCGAATTCCAATCTCAAACTGC
AGTTGCGCAATGTCAAGTGGAAGAATGCCAAGGCGAAGCCCGGCTGTGCC
TACCAGCCAACGGAGATCGAGCAGGTGGCCAATGTGATTACTCACGGCAT
TTGGATACTGCCCGCCGTTTTTGCGGCCATCAAGCTGTTTGAACGCTCCT
CCAGCGCCAGCCAGTATCTGGTTGCTTGGGTCTACGGCGGAGCCCTGTGC
ATGCTCTTCACGGTGTCCACCTTCTTCCACTGCTCCTGCTATTGCGCCGA
GCACAAACCACCGAAGAATGTCAAGGCCTGGCCCTGTCTCGGCTGGCAGA
CGTATCAGGGGCTCAAGAACGTGCTCCATCGCTGCGACAGGGCGATGATC
TATGTGTTCATCGCCGGATCGTACTTCCCCTGGCTCACGCTAGAGAACAC
CGATCATTCGGCCATACTCTTCTGCATGGAATGGGTCATCTGGCTGATGG
CGGGCATAGGAATTGCCTACCAGCAGGTCTTCCACGAGCGCTACAAGTGT
CTGGAGACGTTCTTCTATCTGGTGATGGGCCTGGGACCCGCTCTAGTCGT
TGTGTTCACTGGCCACCACTTCCACGGTATGATGCAGCTCAAGTTCGGCG
GCGGCTTCTACATTCTGGGCATTGTATTC
BO04878.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4615-PA | 942 | CG4615-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4615-RA | 1973 | CG4615-RA | 236..1048 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7100274..7100522 | 265..17 | 1245 | 100 | Minus |
X | 23542271 | X | 7099725..7099946 | 678..457 | 1110 | 100 | Minus |
X | 23542271 | X | 7100009..7100201 | 456..264 | 965 | 100 | Minus |
X | 23542271 | X | 7099503..7099658 | 829..674 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:12:34 has no hits.
BO04878.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:04 Download gff for
BO04878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:23 Download gff for
BO04878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:25 Download gff for
BO04878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 230..1048 | 12..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:11:10 Download gff for
BO04878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 230..1048 | 12..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:10 Download gff for
BO04878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7099503..7099655 | 677..829 | 100 | <- | Minus |
X | 7099727..7099946 | 457..676 | 100 | <- | Minus |
X | 7100009..7100199 | 266..456 | 100 | <- | Minus |
X | 7100274..7100528 | 12..265 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:25 Download gff for
BO04878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6993536..6993688 | 677..829 | 100 | <- | Minus |
arm_X | 6993760..6993979 | 457..676 | 100 | <- | Minus |
arm_X | 6994042..6994232 | 266..456 | 100 | <- | Minus |
arm_X | 6994307..6994561 | 12..265 | 99 | | Minus |
BO04878.complete Sequence
973 bp (973 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629911
> BO04878.complete
GAAGTTATCAGTCGACATGAGCAACAGCGAAGGAAGCGGCCACGAAAGTG
GAATCCGTACACTGAATCGCAATGCGAATGGAAACGGCAATGGAGACCTC
AGTCTGATGCAGGATCTGCAGCATAAGTACGCCTTCCTCGAGAATCTCTT
CAGCAAGTTCTGGAAGTCTATCATCAAGTCGAATTCCAATCTCAAACTGC
AGTTGCGCAATGTCAAGTGGAAGAATGCCAAGGCGAAGCCCGGCTGTGCC
TACCAGCCAACGGAGATCGAGCAGGTGGCCAATGTGATTACTCACGGCAT
TTGGATACTGCCCGCCGTTTTTGCGGCCATCAAGCTGTTTGAACGCTCCT
CCAGCGCCAGCCAGTATCTGGTTGCTTGGGTCTACGGCGGAGCCCTGTGC
ATGCTCTTCACGGTGTCCACCTTCTTCCACTGCTCCTGCTATTGCGCCGA
GCACAAACCACCGAAGAATGTCAAGGCCTGGCCCTGTCTCGGCTGGCAGA
CGTATCAGGGGCTCAAGAACGTGCTCCATCGCTGCGACAGGGCGATGATC
TATGTGTTCATCGCCGGATCGTACTTCCCCTGGCTCACGCTAGAGAACAC
CGATCATTCGGCCATACTCTTCTGCATGGAATGGGTCATCTGGCTGATGG
CGGGCATAGGAATTGCCTACCAGCAGGTCTTCCACGAGCGCTACAAGTGT
CTGGAGACGTTCTTCTATCTGGTGATGGGCCTGGGACCCGCTCTAGTCGT
TGTGTTCACTGGCCACCACTTCCACGGTATGATGCAGCTCAAGTTCGGCG
GCGGCTTCTACATTCTGGGCATTGTATTCTTCAAGGCGGACGGCACGATA
CCCATGGCCCATGCCATTTGGCATCTGTTTGTGGTGCTGGCCGCCGGATG
TCACTATTACGCCATCCTGGTGAATCTATATCCAAGCGAGGGAGCCGCAG
CACCGGCAAGCTTTCTAGACCAT
BO04878.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:36:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4615-RA | 942 | CG4615-PA | 1..939 | 17..955 | 4695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:36:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4615-RA | 1973 | CG4615-RA | 236..1174 | 17..955 | 4695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7099377..7099658 | 955..674 | 1410 | 100 | Minus |
X | 23542271 | X | 7100274..7100522 | 265..17 | 1245 | 100 | Minus |
X | 23542271 | X | 7099725..7099946 | 678..457 | 1110 | 100 | Minus |
X | 23542271 | X | 7100009..7100201 | 456..264 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:36:38 has no hits.
BO04878.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:45 Download gff for
BO04878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 1..942 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:19 Download gff for
BO04878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 227..1175 | 12..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:13 Download gff for
BO04878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 236..1174 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:45 Download gff for
BO04878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 227..1175 | 12..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:35 Download gff for
BO04878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 236..1174 | 17..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:35 Download gff for
BO04878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7099374..7099655 | 677..957 | 99 | <- | Minus |
X | 7099727..7099946 | 457..676 | 100 | <- | Minus |
X | 7100009..7100199 | 266..456 | 100 | <- | Minus |
X | 7100274..7100522 | 17..265 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:13 Download gff for
BO04878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6993407..6993688 | 677..957 | 99 | <- | Minus |
arm_X | 6993760..6993979 | 457..676 | 100 | <- | Minus |
arm_X | 6994042..6994232 | 266..456 | 100 | <- | Minus |
arm_X | 6994307..6994555 | 17..265 | 100 | | Minus |
BO04878.pep Sequence
Translation from 16 to 973
> BO04878.pep
MSNSEGSGHESGIRTLNRNANGNGNGDLSLMQDLQHKYAFLENLFSKFWK
SIIKSNSNLKLQLRNVKWKNAKAKPGCAYQPTEIEQVANVITHGIWILPA
VFAAIKLFERSSSASQYLVAWVYGGALCMLFTVSTFFHCSCYCAEHKPPK
NVKAWPCLGWQTYQGLKNVLHRCDRAMIYVFIAGSYFPWLTLENTDHSAI
LFCMEWVIWLMAGIGIAYQQVFHERYKCLETFFYLVMGLGPALVVVFTGH
HFHGMMQLKFGGGFYILGIVFFKADGTIPMAHAIWHLFVVLAAGCHYYAI
LVNLYPSEGAAAPASFLDH
BO04878.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4615-PA | 313 | CG4615-PA | 1..313 | 1..313 | 1710 | 100 | Plus |