Clone BO04878 Report

Search the DGRC for BO04878

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG4615-RA
Protein status:BO04878.pep: validated full length
Sequenced Size:973

Clone Sequence Records

BO04878.3prime Sequence

942 bp (821 high quality bases) assembled on 2005-12-02

> BO04878.3prime
ATGGTCTAGAAAGCTTGCCGGTGCTGCGGCTCCCTCGCTTGGATATAGAT
TCACCAGGATGGCGTAATAGTGACATCCGGCGGCCAGCACCACAAACAGA
TGCCAAATGGCATGGGCCATGGGTATCGTGCCGTCCGCCTTGAAGAATAC
AATGCCCAGAATGTAGAAGCCGCCGCCGAACTTGAGCTGCATCATACCGT
GGAAGTGGTGGCCAGTGAACACAACGACTAGAGCGGGTCCCAGGCCCATC
ACCAGATAGAAGAACGTCTCCAGACACTTGTAGCGCTCGTGGAAGACCTG
CTGGTAGGCAATTCCTATGCCCGCCATCAGCCAGATGACCCATTCCATGC
AGAAGAGTATGGCCGAATGATCGGTGTTCTCTAGCGTGAGCCAGGGGAAG
TACGATCCGGCGATGAACACATAGATCATCGCCCTGTCGCAGCGATGGAG
CACGTTCTTGAGCCCCTGATACGTCTGCCAGCCGAGACAGGGCCAGGCCT
TGACATTCTTCGGTGGTTTGTGCTCGGCGCAATAGCAGGAGCAGTGGAAG
AAGGTGGACACCGTGAAGAGCATGCACAGGGCTCCGCCGTAGACCCAAGC
AACCAGATACTGGCTGGCGCTGGAGGAGCGTTCAAACAGCTTGATGGCCG
CAAAAACGGCGGGCAGTATCCAAATGCCGTGAGTAATCACATTGGCCACC
TGCTCGATCTCCGTTGGCTGGTAGGCACAGCCGGGCTTCGCCTTGGCATT
CTTCCACTTGACATTGCGCAACTGCAGTTTGAGATTGGAATTCGACTTGA
TGATAGACTTCCAGAACTTGCTGAAGAGATTCTCGAGGAAGGCGTACTTA
TGCTGCAGATCCTGCATCAGACTGAGGTCTCCATTGCCGTTTCATTCGCA
TTGCGATTCAGTGTACGGATTCCACTTTCGTGGCCGCTTCCT

BO04878.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-PA 942 CG4615-RA 65..939 893..19 4375 100 Minus
CG4615-PA 942 CG4615-RA 15..64 942..893 250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-RA 1973 CG4615-RA 250..1174 942..19 4600 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7099377..7099658 19..300 1410 100 Plus
X 23542271 X 7100274..7100508 709..942 1125 99.6 Plus
X 23542271 X 7099725..7099946 296..517 1110 100 Plus
X 23542271 X 7100009..7100201 518..710 965 100 Plus
Blast to na_te.dros performed on 2015-02-04 19:30:48 has no hits.

BO04878.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:03 Download gff for BO04878.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-PA 15..942 16..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:22 Download gff for BO04878.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-PA 15..942 16..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:18:01 Download gff for BO04878.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 250..1178 15..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:36:10 Download gff for BO04878.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 250..1178 15..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:36:10 Download gff for BO04878.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7099373..7099655 15..297 99 <- Plus
X 7099727..7099946 298..517 100 <- Plus
X 7100009..7100199 518..708 100 <- Plus
X 7100274..7100508 709..942 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:18:01 Download gff for BO04878.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6993406..6993688 15..297 99 <- Plus
arm_X 6993760..6993979 298..517 100 <- Plus
arm_X 6994042..6994232 518..708 100 <- Plus
arm_X 6994307..6994541 709..942 99   Plus

BO04878.5prime Sequence

829 bp (828 high quality bases) assembled on 2005-11-29

> BO04878.5prime
GAAGTTATCAGTCGACATGAGCAACAGCGAAGGAAGCGGCCACGAAAGTG
GAATCCGTACACTGAATCGCAATGCGAATGGAAACGGCAATGGAGACCTC
AGTCTGATGCAGGATCTGCAGCATAAGTACGCCTTCCTCGAGAATCTCTT
CAGCAAGTTCTGGAAGTCTATCATCAAGTCGAATTCCAATCTCAAACTGC
AGTTGCGCAATGTCAAGTGGAAGAATGCCAAGGCGAAGCCCGGCTGTGCC
TACCAGCCAACGGAGATCGAGCAGGTGGCCAATGTGATTACTCACGGCAT
TTGGATACTGCCCGCCGTTTTTGCGGCCATCAAGCTGTTTGAACGCTCCT
CCAGCGCCAGCCAGTATCTGGTTGCTTGGGTCTACGGCGGAGCCCTGTGC
ATGCTCTTCACGGTGTCCACCTTCTTCCACTGCTCCTGCTATTGCGCCGA
GCACAAACCACCGAAGAATGTCAAGGCCTGGCCCTGTCTCGGCTGGCAGA
CGTATCAGGGGCTCAAGAACGTGCTCCATCGCTGCGACAGGGCGATGATC
TATGTGTTCATCGCCGGATCGTACTTCCCCTGGCTCACGCTAGAGAACAC
CGATCATTCGGCCATACTCTTCTGCATGGAATGGGTCATCTGGCTGATGG
CGGGCATAGGAATTGCCTACCAGCAGGTCTTCCACGAGCGCTACAAGTGT
CTGGAGACGTTCTTCTATCTGGTGATGGGCCTGGGACCCGCTCTAGTCGT
TGTGTTCACTGGCCACCACTTCCACGGTATGATGCAGCTCAAGTTCGGCG
GCGGCTTCTACATTCTGGGCATTGTATTC

BO04878.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-PA 942 CG4615-RA 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-RA 1973 CG4615-RA 236..1048 17..829 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7100274..7100522 265..17 1245 100 Minus
X 23542271 X 7099725..7099946 678..457 1110 100 Minus
X 23542271 X 7100009..7100201 456..264 965 100 Minus
X 23542271 X 7099503..7099658 829..674 780 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:12:34 has no hits.

BO04878.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:04 Download gff for BO04878.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-PA 1..813 17..829 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:23 Download gff for BO04878.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-PA 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:25 Download gff for BO04878.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 230..1048 12..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:11:10 Download gff for BO04878.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 230..1048 12..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:10 Download gff for BO04878.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7099503..7099655 677..829 100 <- Minus
X 7099727..7099946 457..676 100 <- Minus
X 7100009..7100199 266..456 100 <- Minus
X 7100274..7100528 12..265 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:25 Download gff for BO04878.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6993536..6993688 677..829 100 <- Minus
arm_X 6993760..6993979 457..676 100 <- Minus
arm_X 6994042..6994232 266..456 100 <- Minus
arm_X 6994307..6994561 12..265 99   Minus

BO04878.complete Sequence

973 bp (973 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629911

> BO04878.complete
GAAGTTATCAGTCGACATGAGCAACAGCGAAGGAAGCGGCCACGAAAGTG
GAATCCGTACACTGAATCGCAATGCGAATGGAAACGGCAATGGAGACCTC
AGTCTGATGCAGGATCTGCAGCATAAGTACGCCTTCCTCGAGAATCTCTT
CAGCAAGTTCTGGAAGTCTATCATCAAGTCGAATTCCAATCTCAAACTGC
AGTTGCGCAATGTCAAGTGGAAGAATGCCAAGGCGAAGCCCGGCTGTGCC
TACCAGCCAACGGAGATCGAGCAGGTGGCCAATGTGATTACTCACGGCAT
TTGGATACTGCCCGCCGTTTTTGCGGCCATCAAGCTGTTTGAACGCTCCT
CCAGCGCCAGCCAGTATCTGGTTGCTTGGGTCTACGGCGGAGCCCTGTGC
ATGCTCTTCACGGTGTCCACCTTCTTCCACTGCTCCTGCTATTGCGCCGA
GCACAAACCACCGAAGAATGTCAAGGCCTGGCCCTGTCTCGGCTGGCAGA
CGTATCAGGGGCTCAAGAACGTGCTCCATCGCTGCGACAGGGCGATGATC
TATGTGTTCATCGCCGGATCGTACTTCCCCTGGCTCACGCTAGAGAACAC
CGATCATTCGGCCATACTCTTCTGCATGGAATGGGTCATCTGGCTGATGG
CGGGCATAGGAATTGCCTACCAGCAGGTCTTCCACGAGCGCTACAAGTGT
CTGGAGACGTTCTTCTATCTGGTGATGGGCCTGGGACCCGCTCTAGTCGT
TGTGTTCACTGGCCACCACTTCCACGGTATGATGCAGCTCAAGTTCGGCG
GCGGCTTCTACATTCTGGGCATTGTATTCTTCAAGGCGGACGGCACGATA
CCCATGGCCCATGCCATTTGGCATCTGTTTGTGGTGCTGGCCGCCGGATG
TCACTATTACGCCATCCTGGTGAATCTATATCCAAGCGAGGGAGCCGCAG
CACCGGCAAGCTTTCTAGACCAT

BO04878.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-RA 942 CG4615-PA 1..939 17..955 4695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-RA 1973 CG4615-RA 236..1174 17..955 4695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7099377..7099658 955..674 1410 100 Minus
X 23542271 X 7100274..7100522 265..17 1245 100 Minus
X 23542271 X 7099725..7099946 678..457 1110 100 Minus
X 23542271 X 7100009..7100201 456..264 965 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:36:38 has no hits.

BO04878.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:45 Download gff for BO04878.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 1..942 17..958 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:19 Download gff for BO04878.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 227..1175 12..959 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:13 Download gff for BO04878.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 236..1174 17..957 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:45 Download gff for BO04878.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 227..1175 12..959 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:35 Download gff for BO04878.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 236..1174 17..957 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:35 Download gff for BO04878.complete
Subject Subject Range Query Range Percent Splice Strand
X 7099374..7099655 677..957 99 <- Minus
X 7099727..7099946 457..676 100 <- Minus
X 7100009..7100199 266..456 100 <- Minus
X 7100274..7100522 17..265 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:13 Download gff for BO04878.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6993407..6993688 677..957 99 <- Minus
arm_X 6993760..6993979 457..676 100 <- Minus
arm_X 6994042..6994232 266..456 100 <- Minus
arm_X 6994307..6994555 17..265 100   Minus

BO04878.pep Sequence

Translation from 16 to 973

> BO04878.pep
MSNSEGSGHESGIRTLNRNANGNGNGDLSLMQDLQHKYAFLENLFSKFWK
SIIKSNSNLKLQLRNVKWKNAKAKPGCAYQPTEIEQVANVITHGIWILPA
VFAAIKLFERSSSASQYLVAWVYGGALCMLFTVSTFFHCSCYCAEHKPPK
NVKAWPCLGWQTYQGLKNVLHRCDRAMIYVFIAGSYFPWLTLENTDHSAI
LFCMEWVIWLMAGIGIAYQQVFHERYKCLETFFYLVMGLGPALVVVFTGH
HFHGMMQLKFGGGFYILGIVFFKADGTIPMAHAIWHLFVVLAAGCHYYAI
LVNLYPSEGAAAPASFLDH

BO04878.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-PA 313 CG4615-PA 1..313 1..313 1710 100 Plus