Clone BO04880 Report

Search the DGRC for BO04880

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:48
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptU2af50-RA
Protein status:BO04880.pep: validated full length
Sequenced Size:1282

Clone Sequence Records

BO04880.3prime Sequence

929 bp (775 high quality bases) assembled on 2005-12-02

> BO04880.3prime
ATGGTCTAGAAAGCTTGCAAACTCGCGTCTGTGGTATTTGTCGGGATCGA
AATATGATGTGACCACAACGCGGTCGCTGAATTTACGTCCAGTAAGTGCT
TGCTGCGCCTTCTGACAGTCGAGAACCGAGTTGAATTCGACAAAGACCTT
GCCGCAACCGGGAACTTCGACGCCCTCGATGGGACGTGGAATTTCCACGC
TCCGCACGACTCCGTATTTCGTGCACTCCTCCTTGATGTCCTCCAAGATG
TCCTCGTACTCCTCCTCGTCCCGCAGTTCATCGGGCGTGACCATGTTGAG
CAAGCAAAGAACCTCAGTCGGCGGTCCAGAGGTCACCACATTGGACAGGC
CCGGCACTTGGAGCATTACGGACTGCGTGGTGTTGGCCGCGTTCTGGGCA
TTCTTGGCGCCCACACTGGCTCGTTGGACAATCAGTTTTTTGTCACCCAG
CTGCATTCCATTTAGGCCAGCAATCGACTGATCTGTGATGCTAAGATCGA
CATATTCACAGAAAGCATAACCCTTACTCAACCCAGTAGCGGCATCCTTA
ACCAGGTTGAAGGCTCGTAGCTTGCCAAACGACAAAAGCAGTTCCTTAAC
CTGATCGTCATTCAGATAGTTTGGTAGACCTCCGATGAAGATTTTGTGAG
GCGAGTCCGGAACCACTGTCGAAATAACTCCACTGGAAACAACAGCGGGC
TTAATTGCCGGCGTATCTGTTATACCCGGCATGGGCTGGTAATCGTGCGG
ACGCCTAATCTTTAAGCTCTGCCCCTTCAAATTGATGCCATCGAATGCCA
TGGCCTGGGTGGTTTCATCAATCGATCGGAATTCGAGGAAAGCAAAGTTT
TTGTCCAAGTAAATTTGGCATGCCAAGACGGGACTGCCGGGCCGCTGGGC
GAGCCCAACTAAATGCATCTGTTGGGTGA

BO04880.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9998-PA 1251 U2af50-RA 377..1248 890..19 4335 99.8 Minus
CG9998-PA 1251 U2af50-RA 342..372 925..895 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
U2af50-RD 1473 CG9998-RD 500..1410 929..19 4480 99.6 Minus
U2af50-RC 1371 CG9998-RC 398..1308 929..19 4480 99.6 Minus
U2af50-RB 1344 CG9998-RB 371..1281 929..19 4480 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16356759..16357219 19..479 2305 100 Plus
X 23542271 X 16357643..16357882 690..929 1125 97.9 Plus
X 23542271 X 16357295..16357419 478..602 625 100 Plus
X 23542271 X 16357481..16357573 598..690 465 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:29:36 has no hits.

BO04880.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:07 Download gff for BO04880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9998-PA 339..1251 18..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:27 Download gff for BO04880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9998-PA 339..1251 18..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:33 Download gff for BO04880.3prime
Subject Subject Range Query Range Percent Splice Strand
U2af50-RB 372..1281 19..928 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:36 Download gff for BO04880.3prime
Subject Subject Range Query Range Percent Splice Strand
U2af50-RB 372..1281 19..928 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:36 Download gff for BO04880.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16356759..16357217 19..477 100 <- Plus
X 16357295..16357417 478..600 100 <- Plus
X 16357484..16357572 601..689 100 <- Plus
X 16357643..16357881 690..928 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:33 Download gff for BO04880.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16250792..16251250 19..477 100 <- Plus
arm_X 16251328..16251450 478..600 100 <- Plus
arm_X 16251517..16251605 601..689 100 <- Plus
arm_X 16251676..16251914 690..928 98   Plus

BO04880.5prime Sequence

919 bp (840 high quality bases) assembled on 2005-11-29

> BO04880.5prime
GAAGTTATCAGTCGACATGGGATATGATGACCGTGAACGCGATCGCGAGA
GACGCCGACATCGTTCCCGCTCTCGGGACCGCCATCGCGAACGCTCCAGG
GATCGACGCCATCACCGGAACTCGAGGCGCAAGCCGTCGCTTTATTGGGA
TGTACCGCCGCCGGGATTCGAGCACATCACCCCGATGCAATACAAAGCCA
TGCAGGCGTCCGGACAAATCCCGGCAAGCGTTGTGCCGGATACACCACAA
ACGGCAGTGCCCGTGGTCGGATCGACAATTACCCGACAGGCGCGTCGCCT
GTACGTTGGCAACATTCCGTTTGGCGTCACCGAGGAGGAAATGATGGAGT
TCTTCAACCAACAGATGCATTTAGTTGGGCTCGCCCAGGCGGCCGGCAGT
CCCGTCTTGGCATGCCAAATTAACTTGGACAAAAACTTTGCTTTCCTCGA
ATTCCGATCGATTGATGAAACCACCCAGGCCATGGCATTCGATGGCATCA
ATTTGAAGGGGCAGAGCTTAAAGATTAGGCGTCCGCACGATTACCAGCCC
ATGCCGGGTATAACAGATACGCCGGCAATTAAGCCCGCTGTTGTTTCCAG
TGGAGTTATTTCGACAGTGGTTCCGGACTCGCCTCACAAAATCTTCATCG
GAGGTCTACCAAACTATCTGAATGACGATCAGGTTAAGGAACTGCTTTTG
TCGTTTGGCAAGCTACGAGCCTTCAACCTGGTTAAGGATGCCGCTACTGG
GTTGAGTAAGGGTTATGCTTTCTGTGAATATGTCGATCTTAGCATCACAG
ATCAGTCGATTGCTGGCCTAAATGGAATGCAGCTGGGTGACAAAAAACTG
ATTGTCCAACGAGCCAGTGTGGGCGCAAAGATTGCCCAGAACGCGGCCAA
CACCACGCAGTCCGTAATG

BO04880.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9998-PA 1251 U2af50-RA 1..903 17..919 4465 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
U2af50-RD 1473 CG9998-RD 163..1065 17..919 4485 99.8 Plus
U2af50-RA 1527 CG9998-RA 217..1119 17..919 4485 99.8 Plus
U2af50-RC 1371 CG9998-RC 73..963 29..919 4425 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16357643..16358207 593..29 2825 100 Minus
X 23542271 X 16357295..16357419 805..681 625 100 Minus
X 23542271 X 16357104..16357219 919..804 550 98.3 Minus
X 23542271 X 16357481..16357573 685..593 465 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:24:41 has no hits.

BO04880.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:08 Download gff for BO04880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9998-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:29 Download gff for BO04880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9998-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:02 Download gff for BO04880.5prime
Subject Subject Range Query Range Percent Splice Strand
U2af50-RA 212..1119 9..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:39:28 Download gff for BO04880.5prime
Subject Subject Range Query Range Percent Splice Strand
U2af50-RA 212..1119 9..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:39:28 Download gff for BO04880.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16357295..16357417 683..805 100 <- Minus
X 16357484..16357572 594..682 100 <- Minus
X 16357104..16357217 806..919 98 <- Minus
X 16357643..16358206 30..593 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:02 Download gff for BO04880.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16251328..16251450 683..805 100 <- Minus
arm_X 16251517..16251605 594..682 100 <- Minus
arm_X 16251137..16251250 806..919 98 <- Minus
arm_X 16251676..16252239 30..593 100 <- Minus

BO04880.complete Sequence

1282 bp (1282 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629913

> BO04880.complete
GAAGTTATCAGTCGACATGGGATATGATGACCGTGAACGCGATCGCGAGA
GACGCCGACATCGTTCCCGCTCTCGGGACCGCCATCGCGAACGCTCCAGG
GATCGACGCCATCACCGGAACTCGAGGCGCAAGCCGTCGCTTTATTGGGA
TGTACCGCCGCCGGGATTCGAGCACATCACCCCGATGCAATACAAAGCCA
TGCAGGCGTCCGGACAAATCCCGGCAAGCGTTGTGCCGGATACACCACAA
ACGGCAGTGCCCGTGGTCGGATCGACAATTACCCGACAGGCGCGTCGCCT
GTACGTTGGCAACATTCCGTTTGGCGTCACCGAGGAGGAAATGATGGAGT
TCTTCAACCAACAGATGCATTTAGTTGGGCTCGCCCAGGCGGCCGGCAGT
CCCGTCTTGGCATGCCAAATTAACTTGGACAAAAACTTTGCTTTCCTCGA
ATTCCGATCGATTGATGAAACCACCCAGGCCATGGCATTCGATGGCATCA
ATTTGAAGGGGCAGAGCTTAAAGATTAGGCGTCCGCACGATTACCAGCCC
ATGCCGGGTATAACAGATACGCCGGCAATTAAGCCCGCTGTTGTTTCCAG
TGGAGTTATTTCGACAGTGGTTCCGGACTCGCCTCACAAAATCTTCATCG
GAGGTCTACCAAACTATCTGAATGACGATCAGGTTAAGGAACTGCTTTTG
TCGTTTGGCAAGCTACGAGCCTTCAACCTGGTTAAGGATGCCGCTACTGG
GTTGAGTAAGGGTTATGCTTTCTGTGAATATGTCGATCTTAGCATCACAG
ATCAGTCGATTGCTGGCCTAAATGGAATGCAGCTGGGTGACAAAAAACTG
ATTGTCCAACGAGCCAGTGTGGGCGCCAAGAATGCCCAGAACGCGGCCAA
CACCACGCAGTCCGTAATGCTCCAAGTGCCGGGCCTGTCCAATGTGGTGA
CCTCTGGACCGCCGACTGAGGTTCTTTGCTTGCTCAACATGGTCACGCCC
GATGAACTGCGGGACGAGGAGGAGTACGAGGACATCTTGGAGGACATCAA
GGAGGAGTGCACGAAATACGGAGTCGTGCGGAGCGTGGAAATTCCACGTC
CCATCGAGGGCGTCGAAGTTCCCGGTTGCGGCAAGGTCTTTGTCGAATTC
AACTCGGTTCTCGACTGTCAGAAGGCGCAGCAAGCACTTACTGGACGTAA
ATTCAGCGACCGCGTTGTGGTCACATCATATTTCGATCCCGACAAATACC
ACAGACGCGAGTTTGCAAGCTTTCTAGACCAT

BO04880.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
U2af50-RD 1251 CG9998-PD 1..1248 17..1264 6240 100 Plus
U2af50-RA 1251 CG9998-PA 1..1248 17..1264 6240 100 Plus
U2af50-RB 1284 CG9998-PB 46..1281 29..1264 6180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
U2af50-RD 1473 CG9998-RD 163..1410 17..1264 6240 100 Plus
U2af50-RA 1527 CG9998-RA 217..1464 17..1264 6240 100 Plus
U2af50-RC 1371 CG9998-RC 73..1308 29..1264 6180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16357643..16358207 593..29 2825 100 Minus
X 23542271 X 16356759..16357219 1264..804 2305 100 Minus
X 23542271 X 16357295..16357419 805..681 625 100 Minus
X 23542271 X 16357481..16357573 685..593 465 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:01:42 has no hits.

BO04880.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:46 Download gff for BO04880.complete
Subject Subject Range Query Range Percent Splice Strand
U2af50-RA 1..1251 17..1265 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:21 Download gff for BO04880.complete
Subject Subject Range Query Range Percent Splice Strand
U2af50-RA 212..1464 9..1264 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:51 Download gff for BO04880.complete
Subject Subject Range Query Range Percent Splice Strand
U2af50-RA 217..1464 17..1266 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:46 Download gff for BO04880.complete
Subject Subject Range Query Range Percent Splice Strand
U2af50-RA 212..1464 9..1264 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:02 Download gff for BO04880.complete
Subject Subject Range Query Range Percent Splice Strand
U2af50-RA 217..1464 17..1266 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:02 Download gff for BO04880.complete
Subject Subject Range Query Range Percent Splice Strand
X 16356757..16357217 806..1266 99 <- Minus
X 16357295..16357417 683..805 100 <- Minus
X 16357484..16357572 594..682 100 <- Minus
X 16357643..16358206 30..593 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:51 Download gff for BO04880.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16250790..16251250 806..1266 99 <- Minus
arm_X 16251328..16251450 683..805 100 <- Minus
arm_X 16251517..16251605 594..682 100 <- Minus
arm_X 16251676..16252239 30..593 100 <- Minus

BO04880.pep Sequence

Translation from 16 to 1282

> BO04880.pep
MGYDDRERDRERRRHRSRSRDRHRERSRDRRHHRNSRRKPSLYWDVPPPG
FEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNI
PFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSID
ETTQAMAFDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVVSSGVIST
VVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGY
AFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSV
MLQVPGLSNVVTSGPPTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTK
YGVVRSVEIPRPIEGVEVPGCGKVFVEFNSVLDCQKAQQALTGRKFSDRV
VVTSYFDPDKYHRREFASFLDH

BO04880.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
U2af50-PD 416 CG9998-PD 1..416 1..416 2163 100 Plus
U2af50-PA 416 CG9998-PA 1..416 1..416 2163 100 Plus
U2af50-PB 427 CG9998-PB 16..427 5..416 2139 100 Plus
U2af50-PC 360 CG9998-PC 1..360 57..416 1846 100 Plus
LS2-PA 449 CG3162-PA 15..443 6..411 1129 55.1 Plus