Clone Sequence Records
BO04880.3prime Sequence
929 bp (775 high quality bases) assembled on 2005-12-02
> BO04880.3prime
ATGGTCTAGAAAGCTTGCAAACTCGCGTCTGTGGTATTTGTCGGGATCGA
AATATGATGTGACCACAACGCGGTCGCTGAATTTACGTCCAGTAAGTGCT
TGCTGCGCCTTCTGACAGTCGAGAACCGAGTTGAATTCGACAAAGACCTT
GCCGCAACCGGGAACTTCGACGCCCTCGATGGGACGTGGAATTTCCACGC
TCCGCACGACTCCGTATTTCGTGCACTCCTCCTTGATGTCCTCCAAGATG
TCCTCGTACTCCTCCTCGTCCCGCAGTTCATCGGGCGTGACCATGTTGAG
CAAGCAAAGAACCTCAGTCGGCGGTCCAGAGGTCACCACATTGGACAGGC
CCGGCACTTGGAGCATTACGGACTGCGTGGTGTTGGCCGCGTTCTGGGCA
TTCTTGGCGCCCACACTGGCTCGTTGGACAATCAGTTTTTTGTCACCCAG
CTGCATTCCATTTAGGCCAGCAATCGACTGATCTGTGATGCTAAGATCGA
CATATTCACAGAAAGCATAACCCTTACTCAACCCAGTAGCGGCATCCTTA
ACCAGGTTGAAGGCTCGTAGCTTGCCAAACGACAAAAGCAGTTCCTTAAC
CTGATCGTCATTCAGATAGTTTGGTAGACCTCCGATGAAGATTTTGTGAG
GCGAGTCCGGAACCACTGTCGAAATAACTCCACTGGAAACAACAGCGGGC
TTAATTGCCGGCGTATCTGTTATACCCGGCATGGGCTGGTAATCGTGCGG
ACGCCTAATCTTTAAGCTCTGCCCCTTCAAATTGATGCCATCGAATGCCA
TGGCCTGGGTGGTTTCATCAATCGATCGGAATTCGAGGAAAGCAAAGTTT
TTGTCCAAGTAAATTTGGCATGCCAAGACGGGACTGCCGGGCCGCTGGGC
GAGCCCAACTAAATGCATCTGTTGGGTGA
BO04880.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9998-PA | 1251 | U2af50-RA | 377..1248 | 890..19 | 4335 | 99.8 | Minus |
CG9998-PA | 1251 | U2af50-RA | 342..372 | 925..895 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
U2af50-RD | 1473 | CG9998-RD | 500..1410 | 929..19 | 4480 | 99.6 | Minus |
U2af50-RC | 1371 | CG9998-RC | 398..1308 | 929..19 | 4480 | 99.6 | Minus |
U2af50-RB | 1344 | CG9998-RB | 371..1281 | 929..19 | 4480 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16356759..16357219 | 19..479 | 2305 | 100 | Plus |
X | 23542271 | X | 16357643..16357882 | 690..929 | 1125 | 97.9 | Plus |
X | 23542271 | X | 16357295..16357419 | 478..602 | 625 | 100 | Plus |
X | 23542271 | X | 16357481..16357573 | 598..690 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:29:36 has no hits.
BO04880.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:07 Download gff for
BO04880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9998-PA | 339..1251 | 18..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:27 Download gff for
BO04880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9998-PA | 339..1251 | 18..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:33 Download gff for
BO04880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
U2af50-RB | 372..1281 | 19..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:36 Download gff for
BO04880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
U2af50-RB | 372..1281 | 19..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:36 Download gff for
BO04880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16356759..16357217 | 19..477 | 100 | <- | Plus |
X | 16357295..16357417 | 478..600 | 100 | <- | Plus |
X | 16357484..16357572 | 601..689 | 100 | <- | Plus |
X | 16357643..16357881 | 690..928 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:33 Download gff for
BO04880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16250792..16251250 | 19..477 | 100 | <- | Plus |
arm_X | 16251328..16251450 | 478..600 | 100 | <- | Plus |
arm_X | 16251517..16251605 | 601..689 | 100 | <- | Plus |
arm_X | 16251676..16251914 | 690..928 | 98 | | Plus |
BO04880.5prime Sequence
919 bp (840 high quality bases) assembled on 2005-11-29
> BO04880.5prime
GAAGTTATCAGTCGACATGGGATATGATGACCGTGAACGCGATCGCGAGA
GACGCCGACATCGTTCCCGCTCTCGGGACCGCCATCGCGAACGCTCCAGG
GATCGACGCCATCACCGGAACTCGAGGCGCAAGCCGTCGCTTTATTGGGA
TGTACCGCCGCCGGGATTCGAGCACATCACCCCGATGCAATACAAAGCCA
TGCAGGCGTCCGGACAAATCCCGGCAAGCGTTGTGCCGGATACACCACAA
ACGGCAGTGCCCGTGGTCGGATCGACAATTACCCGACAGGCGCGTCGCCT
GTACGTTGGCAACATTCCGTTTGGCGTCACCGAGGAGGAAATGATGGAGT
TCTTCAACCAACAGATGCATTTAGTTGGGCTCGCCCAGGCGGCCGGCAGT
CCCGTCTTGGCATGCCAAATTAACTTGGACAAAAACTTTGCTTTCCTCGA
ATTCCGATCGATTGATGAAACCACCCAGGCCATGGCATTCGATGGCATCA
ATTTGAAGGGGCAGAGCTTAAAGATTAGGCGTCCGCACGATTACCAGCCC
ATGCCGGGTATAACAGATACGCCGGCAATTAAGCCCGCTGTTGTTTCCAG
TGGAGTTATTTCGACAGTGGTTCCGGACTCGCCTCACAAAATCTTCATCG
GAGGTCTACCAAACTATCTGAATGACGATCAGGTTAAGGAACTGCTTTTG
TCGTTTGGCAAGCTACGAGCCTTCAACCTGGTTAAGGATGCCGCTACTGG
GTTGAGTAAGGGTTATGCTTTCTGTGAATATGTCGATCTTAGCATCACAG
ATCAGTCGATTGCTGGCCTAAATGGAATGCAGCTGGGTGACAAAAAACTG
ATTGTCCAACGAGCCAGTGTGGGCGCAAAGATTGCCCAGAACGCGGCCAA
CACCACGCAGTCCGTAATG
BO04880.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9998-PA | 1251 | U2af50-RA | 1..903 | 17..919 | 4465 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:24:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
U2af50-RD | 1473 | CG9998-RD | 163..1065 | 17..919 | 4485 | 99.8 | Plus |
U2af50-RA | 1527 | CG9998-RA | 217..1119 | 17..919 | 4485 | 99.8 | Plus |
U2af50-RC | 1371 | CG9998-RC | 73..963 | 29..919 | 4425 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16357643..16358207 | 593..29 | 2825 | 100 | Minus |
X | 23542271 | X | 16357295..16357419 | 805..681 | 625 | 100 | Minus |
X | 23542271 | X | 16357104..16357219 | 919..804 | 550 | 98.3 | Minus |
X | 23542271 | X | 16357481..16357573 | 685..593 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:24:41 has no hits.
BO04880.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:12:08 Download gff for
BO04880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9998-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:29:29 Download gff for
BO04880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9998-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:03:02 Download gff for
BO04880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
U2af50-RA | 212..1119 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:39:28 Download gff for
BO04880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
U2af50-RA | 212..1119 | 9..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:39:28 Download gff for
BO04880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16357295..16357417 | 683..805 | 100 | <- | Minus |
X | 16357484..16357572 | 594..682 | 100 | <- | Minus |
X | 16357104..16357217 | 806..919 | 98 | <- | Minus |
X | 16357643..16358206 | 30..593 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:03:02 Download gff for
BO04880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16251328..16251450 | 683..805 | 100 | <- | Minus |
arm_X | 16251517..16251605 | 594..682 | 100 | <- | Minus |
arm_X | 16251137..16251250 | 806..919 | 98 | <- | Minus |
arm_X | 16251676..16252239 | 30..593 | 100 | <- | Minus |
BO04880.complete Sequence
1282 bp (1282 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629913
> BO04880.complete
GAAGTTATCAGTCGACATGGGATATGATGACCGTGAACGCGATCGCGAGA
GACGCCGACATCGTTCCCGCTCTCGGGACCGCCATCGCGAACGCTCCAGG
GATCGACGCCATCACCGGAACTCGAGGCGCAAGCCGTCGCTTTATTGGGA
TGTACCGCCGCCGGGATTCGAGCACATCACCCCGATGCAATACAAAGCCA
TGCAGGCGTCCGGACAAATCCCGGCAAGCGTTGTGCCGGATACACCACAA
ACGGCAGTGCCCGTGGTCGGATCGACAATTACCCGACAGGCGCGTCGCCT
GTACGTTGGCAACATTCCGTTTGGCGTCACCGAGGAGGAAATGATGGAGT
TCTTCAACCAACAGATGCATTTAGTTGGGCTCGCCCAGGCGGCCGGCAGT
CCCGTCTTGGCATGCCAAATTAACTTGGACAAAAACTTTGCTTTCCTCGA
ATTCCGATCGATTGATGAAACCACCCAGGCCATGGCATTCGATGGCATCA
ATTTGAAGGGGCAGAGCTTAAAGATTAGGCGTCCGCACGATTACCAGCCC
ATGCCGGGTATAACAGATACGCCGGCAATTAAGCCCGCTGTTGTTTCCAG
TGGAGTTATTTCGACAGTGGTTCCGGACTCGCCTCACAAAATCTTCATCG
GAGGTCTACCAAACTATCTGAATGACGATCAGGTTAAGGAACTGCTTTTG
TCGTTTGGCAAGCTACGAGCCTTCAACCTGGTTAAGGATGCCGCTACTGG
GTTGAGTAAGGGTTATGCTTTCTGTGAATATGTCGATCTTAGCATCACAG
ATCAGTCGATTGCTGGCCTAAATGGAATGCAGCTGGGTGACAAAAAACTG
ATTGTCCAACGAGCCAGTGTGGGCGCCAAGAATGCCCAGAACGCGGCCAA
CACCACGCAGTCCGTAATGCTCCAAGTGCCGGGCCTGTCCAATGTGGTGA
CCTCTGGACCGCCGACTGAGGTTCTTTGCTTGCTCAACATGGTCACGCCC
GATGAACTGCGGGACGAGGAGGAGTACGAGGACATCTTGGAGGACATCAA
GGAGGAGTGCACGAAATACGGAGTCGTGCGGAGCGTGGAAATTCCACGTC
CCATCGAGGGCGTCGAAGTTCCCGGTTGCGGCAAGGTCTTTGTCGAATTC
AACTCGGTTCTCGACTGTCAGAAGGCGCAGCAAGCACTTACTGGACGTAA
ATTCAGCGACCGCGTTGTGGTCACATCATATTTCGATCCCGACAAATACC
ACAGACGCGAGTTTGCAAGCTTTCTAGACCAT
BO04880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
U2af50-RD | 1251 | CG9998-PD | 1..1248 | 17..1264 | 6240 | 100 | Plus |
U2af50-RA | 1251 | CG9998-PA | 1..1248 | 17..1264 | 6240 | 100 | Plus |
U2af50-RB | 1284 | CG9998-PB | 46..1281 | 29..1264 | 6180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
U2af50-RD | 1473 | CG9998-RD | 163..1410 | 17..1264 | 6240 | 100 | Plus |
U2af50-RA | 1527 | CG9998-RA | 217..1464 | 17..1264 | 6240 | 100 | Plus |
U2af50-RC | 1371 | CG9998-RC | 73..1308 | 29..1264 | 6180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16357643..16358207 | 593..29 | 2825 | 100 | Minus |
X | 23542271 | X | 16356759..16357219 | 1264..804 | 2305 | 100 | Minus |
X | 23542271 | X | 16357295..16357419 | 805..681 | 625 | 100 | Minus |
X | 23542271 | X | 16357481..16357573 | 685..593 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:01:42 has no hits.
BO04880.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:38:46 Download gff for
BO04880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
U2af50-RA | 1..1251 | 17..1265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:07:21 Download gff for
BO04880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
U2af50-RA | 212..1464 | 9..1264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:51 Download gff for
BO04880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
U2af50-RA | 217..1464 | 17..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:38:46 Download gff for
BO04880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
U2af50-RA | 212..1464 | 9..1264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:02 Download gff for
BO04880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
U2af50-RA | 217..1464 | 17..1266 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:02 Download gff for
BO04880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16356757..16357217 | 806..1266 | 99 | <- | Minus |
X | 16357295..16357417 | 683..805 | 100 | <- | Minus |
X | 16357484..16357572 | 594..682 | 100 | <- | Minus |
X | 16357643..16358206 | 30..593 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:51 Download gff for
BO04880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16250790..16251250 | 806..1266 | 99 | <- | Minus |
arm_X | 16251328..16251450 | 683..805 | 100 | <- | Minus |
arm_X | 16251517..16251605 | 594..682 | 100 | <- | Minus |
arm_X | 16251676..16252239 | 30..593 | 100 | <- | Minus |
BO04880.pep Sequence
Translation from 16 to 1282
> BO04880.pep
MGYDDRERDRERRRHRSRSRDRHRERSRDRRHHRNSRRKPSLYWDVPPPG
FEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNI
PFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSID
ETTQAMAFDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVVSSGVIST
VVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGY
AFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSV
MLQVPGLSNVVTSGPPTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTK
YGVVRSVEIPRPIEGVEVPGCGKVFVEFNSVLDCQKAQQALTGRKFSDRV
VVTSYFDPDKYHRREFASFLDH
BO04880.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
U2af50-PD | 416 | CG9998-PD | 1..416 | 1..416 | 2163 | 100 | Plus |
U2af50-PA | 416 | CG9998-PA | 1..416 | 1..416 | 2163 | 100 | Plus |
U2af50-PB | 427 | CG9998-PB | 16..427 | 5..416 | 2139 | 100 | Plus |
U2af50-PC | 360 | CG9998-PC | 1..360 | 57..416 | 1846 | 100 | Plus |
LS2-PA | 449 | CG3162-PA | 15..443 | 6..411 | 1129 | 55.1 | Plus |